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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0315200 |
| Transcript ID | LotjaGi1g1v0315200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0L9UDX4|A0A0L9UDX4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0315200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76112346..76116037) extracted from Lotus japonicus Gifu genome v1.2.
TCCAAACTCAATGCTTCTGTTTTTTGTCCGTTCATCTCCCTTAGCCCCCACCAAACATAAGAAAACAAAATAAAATAAGA AAACATTACCCTAACCCTCTCAATAACTCTCTCTTCTTATCGTCAAAATATATACTCAGAGTTCACATGTACCTAATTAC ATAAGCGATGTGCTCCAAATAAAATTTTGACCGATTAAAAAAAGAGTGTTAAAAAGTGAGTGTTGTAATGTTACTAATAA AATAATACAGATACAGCTTCCATCGCACCAAACCGTAGGCTACAACAACACAAGTAGGAGGTGGTGGTATTGGTCACCAC GCACCAACTACAACACACTCTTCACCCTTTACCATACCAATTACCACACCACACCACCACACTGTACATGCAAATTGCAA TACAACTACACAACACAACAACAAACAAAAACTTTAATCAAATTCAATTCAATAAAATCAAAAAAAAAAAAAAAATTAAA AATTCAACGATTCTCTTCTCGAATATACTCACTCCTTCCTCATCATCAATCATCATCTTTCACTATTCTCTTCTCCATTA TCATCCTCATCTTCTTCTTCAAAGCCTTCTTCATCTTCCACAGATTCAACCAACCTTCACCTTTCACCTCAGTTCTACGC CGTAACCGTTTCCGGTGCTCACCACGCGCCACCATCACCACCTCCGTTAGATCCTGAAACTGAACCTCTAAGCCTTTGAA ACGGAACAAGGAATAGCGTTTCCTTCAGTAGAAGAAACAGAAGAAGCTAGCTATTGCTCAGTGTATATATATTACAGTTT CTGATTGATCTGTTTTTTGTGAACGAACTTGTTGATTGTTGATTGTTCCACGCACGCGCCTCGGATATGGATTTGGACGA TTTCCGATCCGTATTGAAGACGGCGGGAATCGACGTGTGGACGTTCATCGACACCGCAATCGCCGTCGCTTCAACGGATT GCGCCGGCGAGCTGAGGCGTCGGAGAGACGGAATCGTCCAGCGTCTCTATTCCGCCACGTCGGCTCCTCCGCAGTGCCGG AACTGCGAGGGGAGCGGCGGCGGTTTGATTCCCAACGGAAAGCAAATCAGCAAGCGGAGCAGTCCTAGCCCCAGTCCTCA GCGCCGCGGCACGGTTTCTCCGGCGACGCCGCAGTCTCTCGGAAACGATGAGGAGAATGAGGAAGAGGTGGATCCTTATG GTGGCTTGTTCGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTGAACAGGTTTTGAATTAT TGAATTCGTTTTTTTAGTTTAATTAATTCAGAAGCTTAATTAGGAGTGTGATTAACTGATAATGCTTTTTTTTTTTGCTT TGATATTTTGTAGACTGAAGATTATTTGGTGGAGTTGCTGCAAAATCTGGCGGATATGGATATTACATTCCAAGCGTTAA AGGTGAAATTTGCTTTGAAAACTGTTTTTTCATTGTGCTTTTGCTTGTGATGATGATTTGTTTCGGTTGCGCTCTTACTT TACTTTGCGGATTTTGATTCCTGTAGGATTCTGACATTGGGAGGCATGTGAATCGGTTGCGCAAGCATCCTTCCAATGAA GTTCGCCGATTGGTTAAGCTACTTGTCAGGTTGTGAAAGAGCACATGATTTGAAAATTGTTGTGTTTGTGTGTGTTTGCG GTTCGTGATTGCGGATTTTGTTATTTGCAGGAAGTGGAAGGAGATTGTTGATGAGTGGGTGAAGCTGAATCCACAGAAAG GAAACAACAGTTTAATGGGTGGATAATCTTAGTTCTTACTACTACTAATATTTAGGGAGTTTTTTCAATTAAAGATTGAA ATCTTGATGTGAAGTTGTTATTAATGGTAATTAATGGCGACATTCGCAGCTGATGGAGACTCTCCTCTGCAGAAAACCAC CCAAAATGGGCAGCATCATCAGGTCAAAAGCAAAAAATTCTTCAAATATTACTTTTCAATGAGAAGGAACAAACTTTGTT TGGTTTGCTAATATTCTATTCCTTATGCAGATTCCAGATTTTGCGTACTCGCCAAATCCACACAGTGAGTGTAGCATAGC ACCTGATTCAAATCTCACTTTCTTTTACTTTGTTCAATTGCTTGAACTTTGTTGATATGTATGGTTTCTGCTGACACAGA TGGGAGCTCTGGGTCTGACCGCAACAACTCAGAAGCAGAACCTAAACCGAAAGTGATTCCTCGCCAAACTCCGCCAAAAC CAACGCCATCACCATCAGTTACCACTCTTGCATTTACTCCTCAAAATGTACGGATATGATTTTGTTTCCATTTTGAAGCC TCTGACCTCAGAATGTGGATGGAATTAAATATACTACACCAAATTAGAAACAAAAACACAAAAAGTTTTAGGATTTTCTT GTTAATCTCTATGTGATAACATATATAGTGTTGAATGATTGCAGAAGCAAAGAGAACAGAGGAATAGCAATTTTGAGGCG GAGAAGCTTGCTTCGGCAAGAAAACGGCTTCAAGAGAACTACAGAGATGCTGAAAATGGTGGAATTTCCATTTCCATGAT TTTGATCATTTTCATGCTAGTTCTTTCCCTATATATAACACAAGTACACAACTGACAAATGATTTTTGTGTGTTTTTGTG TGTGGTTTCTAGCCAAAAAGCAAAGAACGATTCAGGTGATGGATATCCATGAGTTACCAAAGTCAAAATCCAAGAACACC TTCTTTGGAAAGAACAAAGGAGGAGGTAGTTCACAGGGAAGGCACTGGTGATGCATGTTGTTCCATTGTTCGTCCGTGCC AATTTCACGTGTAAAAAAAGGTTGTGGGGGTGCCGGATGAACGCCCTGAACCGGTTCATCCCTGAGGTGGATTGTTCCTC CGATGATGATAAACTTATTTTTTTCTTGTTGGTTTTTGTTTACTTAAATTAATAATAACCGAAGGAAAAAAATTCCACGA TATTTTTCCTTTTTGAAAGGGGACTTGTGGGGTTTATTTATTGATGAGCAGCACGTGAATTTGGCATCAGGATATAGATA GAAAATGAGACTATGAGAGTGTGGGGCAAAAAATGTTTTTTTTCTTCTGAAATATATAAAAAAATGCTTTGTACCGGAGG TTTTGGAGTGCAGACTTCTGCTCAGGAGACAGTGGGTGGTTACGGTTCGAGCAATCCCTCGTGAGGGGAACTACGTCGCA GATTTCATGGCTAAATCAGCTCCGGTTCAGCTTGGTCATCGTCTCCTACGAGAACCAGATCCTGATTTACAAGTCCTCCT TATGAAAGACTCTTTAAGTGCCTTGTAGTCCTTTTCTCTGTTTTGTTAGCTTTCCGATGTATCGAAAAAAAAGAAATATA TAAAAAAATATTTTGGTTGAAAGTTTGAATTGGAGTAACCTTGGGTTTAGGAATGCCTTTAAACTCTATTAAACGGCACT TCAGTCATTTCCTCAAAGATAAACATAGTTGGGAAATTACATAGTCATCGTACGTAACCATTTACTTGGGGCCAGGTTTG GTGGGGGTAGGAGTTGAGTTGCTGTAGCAATTAATTCACATTTGTCTTTGGGTCTTTGGGAAATTACACGTGCAAAATGA AGTTGTCTTTCTTTTGCATATTTTTGGTCTAACTTTCAATCGAAAATGCTAGCATTGCTCTTTTTGCACATTTTTTCCAA CACAATGCTAGC
CDS sequence (LotjaGi1g1v0315200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGACGATTTCCGATCCGTATTGAAGACGGCGGGAATCGACGTGTGGACGTTCATCGACACCGCAATCGCCGT CGCTTCAACGGATTGCGCCGGCGAGCTGAGGCGTCGGAGAGACGGAATCGTCCAGCGTCTCTATTCCGCCACGTCGGCTC CTCCGCAGTGCCGGAACTGCGAGGGGAGCGGCGGCGGTTTGATTCCCAACGGAAAGCAAATCAGCAAGCGGAGCAGTCCT AGCCCCAGTCCTCAGCGCCGCGGCACGGTTTCTCCGGCGACGCCGCAGTCTCTCGGAAACGATGAGGAGAATGAGGAAGA GGTGGATCCTTATGGTGGCTTGTTCGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTGAAC AGACTGAAGATTATTTGGTGGAGTTGCTGCAAAATCTGGCGGATATGGATATTACATTCCAAGCGTTAAAGGATTCTGAC ATTGGGAGGCATGTGAATCGGTTGCGCAAGCATCCTTCCAATGAAGTTCGCCGATTGGTTAAGCTACTTGTCAGGAAGTG GAAGGAGATTGTTGATGAGTGGGTGAAGCTGAATCCACAGAAAGGAAACAACAGTTTAATGGCTGATGGAGACTCTCCTC TGCAGAAAACCACCCAAAATGGGCAGCATCATCAGATTCCAGATTTTGCGTACTCGCCAAATCCACACAATGGGAGCTCT GGGTCTGACCGCAACAACTCAGAAGCAGAACCTAAACCGAAAGTGATTCCTCGCCAAACTCCGCCAAAACCAACGCCATC ACCATCAGTTACCACTCTTGCATTTACTCCTCAAAATAAGCAAAGAGAACAGAGGAATAGCAATTTTGAGGCGGAGAAGC TTGCTTCGGCAAGAAAACGGCTTCAAGAGAACTACAGAGATGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATG GATATCCATGAGTTACCAAAGTCAAAATCCAAGAACACCTTCTTTGGAAAGAACAAAGGAGGAGGTAGTTCACAGGGAAG GCACTGGTGA
Protein sequence (LotjaGi1g1v0315200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLDDFRSVLKTAGIDVWTFIDTAIAVASTDCAGELRRRRDGIVQRLYSATSAPPQCRNCEGSGGGLIPNGKQISKRSSP SPSPQRRGTVSPATPQSLGNDEENEEEVDPYGGLFDDEQKKILEIKEQLEDPEQTEDYLVELLQNLADMDITFQALKDSD IGRHVNRLRKHPSNEVRRLVKLLVRKWKEIVDEWVKLNPQKGNNSLMADGDSPLQKTTQNGQHHQIPDFAYSPNPHNGSS GSDRNNSEAEPKPKVIPRQTPPKPTPSPSVTTLAFTPQNKQREQRNSNFEAEKLASARKRLQENYRDAENAKKQRTIQVM DIHELPKSKSKNTFFGKNKGGGSSQGRHW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 8.0E-143 | – | |
| PANTHER | 1 | 349 | 349 | 8.0E-143 | – | |
| MobiDBLite | 51 | 113 | 63 | - | – | |
| MobiDBLite | 72 | 99 | 28 | - | – | |
| Gene3D | 115 | 205 | 91 | 1.0E-21 | ||
| ProSiteProfiles | 117 | 194 | 78 | 24.717 | ||
| CDD | 119 | 192 | 74 | 4.7248E-19 | – | |
| SUPERFAMILY | 119 | 204 | 86 | 3.27E-20 | ||
| SMART | 122 | 193 | 72 | 5.0E-9 | ||
| Pfam | 142 | 191 | 50 | 8.8E-13 | ||
| MobiDBLite | 200 | 291 | 92 | - | – | |
| MobiDBLite | 200 | 246 | 47 | - | – | |
| MobiDBLite | 269 | 284 | 16 | - | – | |
| Coils | 291 | 318 | 28 | - | – | |
| MobiDBLite | 328 | 349 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0315200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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