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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0316200 |
| Transcript ID | LotjaGi1g1v0316200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G49230.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78; TrEMBL-Plants: tr|I3S7N0|I3S7N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0316200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76258992..76260259) extracted from Lotus japonicus Gifu genome v1.2.
TAGTTAAATACCTCATTATGAGCACAACCCTTATTATGAATATTCTATATTTCAAGCAACCAGTTACCAATTTGTAATAA ATTAACAATTCCACATTGCAATCAAACACACACACCACATGTGAACTTTCCCTCAATATAAATAGTCACTAGAGGCAACC TCAGACAGAACCCCAAAACAAACTCATCAAACAAACCTCAAACAAAATACAAAACATGGATTCTTCTACTTCCTTCACTT CACCACTCTTACATGACCTTCTTGAAGGATTCCACTCAAGAAGATTGCTCCTTCAAGCAAACCCCCCAGCTTCAACAATC AGCCATGATTCAGAAAAAGCATATCTTGGGGATGGTAATTTTGATGCAAATGTTATTATGGTCCTCTCAGTCCTGTTGTG TGCTCTTATTTGCTCGCTGGGTTTGAACTCCATCATAAGGTGTGCACTAAGATGTTCCAATTTAGTTGTCATAGGTGACT CAGTTACCAACTCTCCAACTAGAGCAGCAAACACTGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCTGTAGTAAGTTAC TCTGCTGAACTGAATTTGCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACCAATGGTGAAAAGGTGAG GATTTTGCCTAAGTGTAACCACGGGTTCCATGTGAGATGCATTGACAAGTGGCTAAGCTCACACTCATCATGCCCCAAGT GCAGACAGTGCCTTATTGAGACTTGTGAGAAGATTGTTGGGGCTACTACCTCATCATCTCAACCTCAACTTTCTGTTGTT GTGGTCACACCAAACCTTCTGGATCCGGTGCTACTAGAAACAGTTGTGACCATAGCACCACTCGAGCCGGAGGGCATGGT GCGTAGCTACAGGGGAATTAGCTAGTTTAATTAGTATATATAGTCCTTTTTTTTCTATTCCAATTACATTGTGGTTGAAG TTGTGGAATTGGTACCATGGCTTGTGAGTTTGCGACTAGAATGCCTCTGATTCTAGTTCTGATCACTAGTCACTCACCCA ACTCAACCATAATCAATTATTGGTGAAGGTGTACATAGTGTTGAAACTAATTAGTTTAACACCAACCCCACTAAATGTAT AAAAGTAGTTCAATTTTGATAACATGTTTGGATCCACAATTTGCATTCTGTTTGGAACTGCTTTAAACCATTCAAAATCA ATTCTCCGTTGTAAGTTATTCATAATAGCTTCTCCCATAATTTCTTCTTCAAAATAATATATTTAAGA
CDS sequence (LotjaGi1g1v0316200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTCTACTTCCTTCACTTCACCACTCTTACATGACCTTCTTGAAGGATTCCACTCAAGAAGATTGCTCCTTCA AGCAAACCCCCCAGCTTCAACAATCAGCCATGATTCAGAAAAAGCATATCTTGGGGATGGTAATTTTGATGCAAATGTTA TTATGGTCCTCTCAGTCCTGTTGTGTGCTCTTATTTGCTCGCTGGGTTTGAACTCCATCATAAGGTGTGCACTAAGATGT TCCAATTTAGTTGTCATAGGTGACTCAGTTACCAACTCTCCAACTAGAGCAGCAAACACTGGAGTCAAGAAGAAAGCTCT CAAGACTTTCCCTGTAGTAAGTTACTCTGCTGAACTGAATTTGCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAG AGTTCACCAATGGTGAAAAGGTGAGGATTTTGCCTAAGTGTAACCACGGGTTCCATGTGAGATGCATTGACAAGTGGCTA AGCTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTTATTGAGACTTGTGAGAAGATTGTTGGGGCTACTACCTCATC ATCTCAACCTCAACTTTCTGTTGTTGTGGTCACACCAAACCTTCTGGATCCGGTGCTACTAGAAACAGTTGTGACCATAG CACCACTCGAGCCGGAGGGCATGGTGCGTAGCTACAGGGGAATTAGCTAG
Protein sequence (LotjaGi1g1v0316200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSTSFTSPLLHDLLEGFHSRRLLLQANPPASTISHDSEKAYLGDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRC SNLVVIGDSVTNSPTRAANTGVKKKALKTFPVVSYSAELNLPSLDSECVICLSEFTNGEKVRILPKCNHGFHVRCIDKWL SSHSSCPKCRQCLIETCEKIVGATTSSSQPQLSVVVVTPNLLDPVLLETVVTIAPLEPEGMVRSYRGIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 227 | 227 | 1.4E-97 | – | |
| PANTHER | 1 | 227 | 227 | 1.4E-97 | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 53 | 74 | 22 | - | – | |
| Phobius | 75 | 229 | 155 | - | – | |
| Gene3D | 88 | 174 | 87 | 4.8E-22 | ||
| SUPERFAMILY | 106 | 175 | 70 | 7.32E-21 | – | |
| Pfam | 127 | 170 | 44 | 1.7E-14 | ||
| CDD | 127 | 170 | 44 | 4.65155E-17 | – | |
| SMART | 128 | 169 | 42 | 1.4E-7 | ||
| ProSiteProfiles | 128 | 170 | 43 | 12.548 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0316200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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