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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0316300 |
| Transcript ID | LotjaGi1g1v0316300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein 13; TAIR: AT3G18770.1 Autophagy-related protein 13; Swiss-Prot: sp|F4J8V5|AT13B_ARATH Autophagy-related protein 13b; TrEMBL-Plants: tr|A0A1J7IGP6|A0A1J7IGP6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0316300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76264451..76270153) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTTGTTACGTGGCTAAAAGATCATGGGGTGCTTCGGCTTCCCCTAAACAATAACATGCACCTGCTTTCAGCCTACA ATGGCACTTCCAATTTGGTCCCACTATTCCCAACATTAACAACTTCACTCTTCATTGCATTCATTTGATTACAATTTTCA ATCAATCACCACTCTCTTCTCTTCTCTTCTGCTTCACAATTTCAGGGTAACCCTCTCCTACTCTTATCTCAAACCACCAC TGTCTCTATAATCCACAACACCATTGCTTTTGTTTTCTTGTTTTTCATCAAACAACAACAACAACCTTAGTAGTATCAGT GATAGTTGCTTCATTCCACTGTCTTATGTTGTTGTTGTTGTGAATTCAGGTCTTGTTCTGTTCCTGCAACATGTCATCCA CACACTCTGAAGCGGCGAAGCTGGAACAAATCATCACCGAGTTCTTCGCCAAAAGCCTTCACATAATCCTCGAATCAAGG GCAATCTCCGCTTCATCGCGCAATTTCAGCACCGTTTCATCTCCCTCTTCGTCCTCATCATCATCTTCAAGCGTGAGGCC GAGGGATAAATGGTTCAATCTAGCGCTGAGGGACTGCCCCGCCGCGCTGGAGAACACTGAGCTATGGCGGCACGGGAACA TGGACCCAATTGTGGTGGATGTGGTTCTGGTTCAGAGGGATCAAACCCTGAGTTTTTCTCCCAGAAGGGTTCTTCCCAGG AGTTCTTCTTTAAAGGAAAGGTACCCCTTTTGCTGGAACACTATGATGGATAGGGAAGAATTAGGGGTTGGGGTAGAGAG TGAGAGGGTTGTAGAGAGATGGGTTGTGCAGTATGAGAGCAGAAAACCCACTAGGGATTCTAATTCTGGTAGTAGAAGGT CAAGCAATACTTCCTTACATGCTTTGTATAAAAAATCAACTTTACTTTTGAGGTCTTTGTATGCTACTGTTAGGCTTTTG CCTGCATATAAGATCTTTAGGGAGCTCAATTCCAATGGGAAGATTTGTGCTTTCACCCTTGCTCACAGGGTTTCCACTTT TGTTGAGCCCTTCACTAGTAAAGAAGAGGCGAAAATGCTCAAGTTTGGGTTCACCCCTGTGGATACCTCTTCTGGAAGGC TATGCCTTTCAGTTATGTATTGTCCCTCGGTCTCGGATGTGAGCTCTGAGCCTTCGACTCCTATGTCCCCGCAAGTTATA ACTGATTATGTTGGGAGTCCAATGGCTGATCCTTTGAGGAGGTATCCATCACTTCCTGTGGCAAGAGTGCCATTGCCCGG CACTCCGTCGTCATTGCCATCTTCAAGGCGGCATAGTTGGAGTTATGACCATTGTAGAGCATCATCTCCTTCGAATAATT GTTCCCCTTCACCCACATATTCAGAATCAAACACATCTGTTTCCCTTGCTAGTTTTCATTGCTATCCACCCAACAGTTTG CCTCCTCATCCTAGTGGAATGTCCTTGCTTCATAAGAAGAATACAAATTTCGACGATTATAACCCCTCACCAAGCTTCTC TCCCTCTCCCTCTCCATCACCTCCCATATACAATTTGGGATCATTAGCATCAAAAGCACTTTTACGCTCTGAAAGTGCTC CCGTCTGCATACCTAATACTAAAGATTCTGATTCCCCTGGATACACTGATAGGCGTAATTTGCCTCCATCCTCTCCGCGT AGAGGTTTGAGGAATGTGATACAAACATGCACAACAACTGAGAAGGTATGCTGTATCATATACTAATCGCGGTGAATGTT TTCTTTACTCAAAGTAATTGATATTTCACCGGTACCTTTTTGCTTTGTGTAGTTGTTTTCTCTTGGAAAAGATGAGTCTC AGAAGTATTCTGGAGCCAAGATAGTAGCTAACAGCTTACCGCAGATTTCATTTTCCAGGAGCTCTAGCAGGTCTTATCAG GATGATTTTGATGATACTGATTTTACTTGTCCTTTTGATGTGGATGATGATGATATAACAGATCCTGGTAGCAGGTACTT TGTAACTGAAATTCATTGGGATTTATGCTTCATTACATGTTAATCTTGAACGCTAGATCTCTGCTTTGTCAAAAGTAGCT GATGCTTCATATTGTGTTGTTAGAATTCCTCATGAGTATGATGTAACTGCTAGATAATTACCATATATTAGTAGGCATTT GTTTGTTATTGTCTTCAGTGAGGGCGAATCAGGTTGAACACGAGTGCTACTATCCTACTGTGAGATGAGGTCATGACATC CTTCTGGTCTGCTCATGCTGTATGGGCTGTCTTGTAGTACTAAATTTTTTGTTTTCAACTACTAATTGCTTTCCTGTGAG GCTATGAACTTAAAAGGGGGTATTTACCAAGGGGAAATTGATGAACAGATAGAAAACAAAGTGAAATAAAAAATAAGGGA AATTGTTGTTCTTTATTTGTTATGGCTGAATGCTGATTTACTGCCTCCACTTGGAGGATCCAACTCTATGTTTCTCACTT CCAATTCAGCTACTGCTTAACACTTCCATATTCTGATTTTCAAAAATATTTGGCTTTATCTAACTAGTAGCGAAGACTTT TATTCGTATTTTTATAATTATTTTTCTTCAAAAGATGACCTGTCTGTACAATTGCTTTTTGAAACTGAATGATTTTTATG ATTTACTTACAGTGATGGCAATAATATTGAAATGGCCTGGATTCACTATGCTTACCATCCTTTATTTTGCCTCATCTTCT GAACTCTGAAGTGTATTATTGGTATTTAAGGCAATTTATTTTCTTCAAAGTAAGAGATTGATGTATATTTGTAGTTTGAG TCTGCTGGTTTCACCCTTTTCTTTTTTAATGGACTACTGTAATCCTATCGCTTAAAAGTTCAACTTAGATATATTGTACT AATGCGCTCATCCTGTTCTCTCTTATACTGATTCTTTGGTTCACAAAATTTTCATCTATTCTGGCTGATTGTATGTAATA AAGCCACTTATTTTCAGAAAGGATGTTAGAGAGGATTGAATAGACAGTGTTACAGAATCACCATGATGATTCTGTTTATC CTTATTCATATTTGATTTGAATAAAGGAAGAAAATGTTCATCATTTGTCCACTATTTAATGTTGAAGTAGATGGAGGGGG GGGGGGTCCTTTCGACAACCTCAGTCTTGCCATGCCATTGATTCAGAATTCCACATTGTCAAACAGGGCACATCATTTGA GTAACTAAATGATTCCTACAGCAATAGAAGATTTTGAACATTTTTTTATATATTTGGCACTACATGGTTTCTTGGTAGTA AGAAACGTCTTTAAATTGTCTGTGGTTCAAAACTCTTGACCTTCTCAAACCAAGAAAAAATAAAGTGTCCAGTTGATATA GTTGTTTTGGGGGGATGGGTTTTGTTTGTGGTTAGGCTTCAATCCCATCTATACGGTGGATTTGTTTTTATTGAATAAGA AAATTTACTAGATAGAAATGAGGGAGAAGTACAGCTAATGGGAGGATAGAATACCCTCCAAATGCATAGGGAAAAAAGAT AAAAAGAAAAAGAAAAATTATATGAAATACTAATTAGTGCAGCAATGCTGCCGTATCTCCGCATATTTGAAATGGAAACT TCTTTGAAACAATCATGAGTAGAACACATGAGCGAGGCCATTAACATCGTCCAGAACAGGTAAGGAGTAGATAGGAACTT TTGGACATGGGAGCTCACTACCACTTTTTAACTTTATGTGAGGGTTGGAGGTTACAAATTTGACATTCATCCACATCATT GAAAGTAGGGAATCCCTGACAAATGGAATACCACTTACGAGGAAGCATCCTAATTCCTATCTGATCAGTGGTGAATTCTT GCTCAGTTTAGTACTTTAATGTGCAGGAAATCTCCCATTGGCTGGAAGGTCCATCATATCCTTTTCTAGCAGCACATTTT ATTTGGGGGGGGGTGTGAAATCTGGGAAATAATAGTGTCATGTATGATGTTTTATATAATCTATTTATTGATAGTAGCAG GTTCCTTTTCTCCTGGGAATTCTTCAATCCTCATTATAACGTCACTTAGAAGGGGCACTTTCATCACCGCTCCACTTGGC TGCTATCGGCTGTTTTGCTCTATAATCCAGAAGGAATTGCTTTATCAGATATAATTTAATATAGTTGAGAATATAAAAAG TATCCTGATCCTGGCTATATATCTCTTGTATTTGTATGGCCTTCTCATTTGTACTTTGTAGTAGGAATTAGTTTTTAGAT CTGGTTGCTACCTTGCTGGTATGGTATATCAAAGACAACAAGAACTTTACTTGACAAAATGCATTGTGTGTTGTATCTTC TCAGACATTTCATGTAATTTAGTGACTATTTTAAATCTGTCAGCTGGTTTTTACTATGCTACCATTAAGAATTGAGTTTT GCATAATAATAGAAAAACAGAAATAGGAAGATAGTTATTTTGATTAGTTTGTAATCTTATGCTAGAAGATTGGGTTGGCC AAGCTGGGTTAACATTCTGTTAATTACTTGATACTTGTGCTGACTACAATTGAAATCCTTTTACATCTCTTTTTAGTTGA GTCAGGATTTTAAAAAGTTTGTTTGTAGAATCTGGCAATATTTTCTCAGTTTTGTTGAAATATGTGTCATAAAATGTGCC AGCATTTGCCTTTTATTTAGAATTTTGAATATGCTTTCTTGTACTTGCATCAGAGCGGAATCTTTTGATCATGGTCAAAT AGCTGAGGTGCTTGAAGCTGGAAAATTCCTTCCTATCAGAAAGTCCCAAGATGCTGCAGTTGGTGCACTTGTACATATGT TGAAGAAAGCGGCACCTCTGCATCAAGACTTCTCGACATCTGAACACTTGTCACCGGGCACACGTCCCGAAACCTTGAGC AATAACAGCATTCAAGAGCCCAATCAGGTTGTAGATGGGCTAAATCAAGCGAGCATCATGTCGACAATGAATAGGAAAAC AACAGCTGATGCATTGGAAGAGTTCTACAGTTACAGAGAGATGAAAAACTTGTTACTTATGCGCGGCAGTAAGCAACAGA TATAGTGCACTGCTTCTGCTGTGTAACATGCATATGCAGATGTTATAGCAGTAAAACTTGTACAGCTTTTCCATTTGACA AATTGGGTCACCACCTCAGGAATCTGTTCTTCCTTTTGTAAATACATGTGAATAAATTACTTTTTGTTGTTTAAGTTTTG ATCTAAATGATAATAAGCCTTCTGGGGCACATCACACTTGGATAAAATACATGAAATGCTTATGGTTACACTTGGGCATC CCAACATGAAAGATCTGCATAACGTTCATAGTTCAAAAGCATTGTCACTGAGTTTTGAGACCCTAGTCACTGCCTTTTCA TGCACAATTGCACAAGTAGTTATTGTATCTAATTTGATGTTATTTTATCTTCTGATCCTAGATGCATTCGCTTTTGTAAG CTTGGAAAGTTATTGTTGAATACCCCATCAGAAAAAATAATTAATCTAAAAGAACATGAGAAGTTCAAAGTATTAGTAAG GATCAAAAAAAAATTGTTCAGAGAGAAAAATCATTTTGTCACCTGGTATACAAAATAGTGTGGTTGTTATTTGTTTTTGC TGTGTGATTAATCATCATAAGAGAAGCATAGTATTTTGACCAAAAAGAAAGAGAAGCATAGTATTAGTGTCACATGATTG TATTCAATCAATTAATTCAGTTA
CDS sequence (LotjaGi1g1v0316300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCACACACTCTGAAGCGGCGAAGCTGGAACAAATCATCACCGAGTTCTTCGCCAAAAGCCTTCACATAATCCT CGAATCAAGGGCAATCTCCGCTTCATCGCGCAATTTCAGCACCGTTTCATCTCCCTCTTCGTCCTCATCATCATCTTCAA GCGTGAGGCCGAGGGATAAATGGTTCAATCTAGCGCTGAGGGACTGCCCCGCCGCGCTGGAGAACACTGAGCTATGGCGG CACGGGAACATGGACCCAATTGTGGTGGATGTGGTTCTGGTTCAGAGGGATCAAACCCTGAGTTTTTCTCCCAGAAGGGT TCTTCCCAGGAGTTCTTCTTTAAAGGAAAGGTACCCCTTTTGCTGGAACACTATGATGGATAGGGAAGAATTAGGGGTTG GGGTAGAGAGTGAGAGGGTTGTAGAGAGATGGGTTGTGCAGTATGAGAGCAGAAAACCCACTAGGGATTCTAATTCTGGT AGTAGAAGGTCAAGCAATACTTCCTTACATGCTTTGTATAAAAAATCAACTTTACTTTTGAGGTCTTTGTATGCTACTGT TAGGCTTTTGCCTGCATATAAGATCTTTAGGGAGCTCAATTCCAATGGGAAGATTTGTGCTTTCACCCTTGCTCACAGGG TTTCCACTTTTGTTGAGCCCTTCACTAGTAAAGAAGAGGCGAAAATGCTCAAGTTTGGGTTCACCCCTGTGGATACCTCT TCTGGAAGGCTATGCCTTTCAGTTATGTATTGTCCCTCGGTCTCGGATGTGAGCTCTGAGCCTTCGACTCCTATGTCCCC GCAAGTTATAACTGATTATGTTGGGAGTCCAATGGCTGATCCTTTGAGGAGGTATCCATCACTTCCTGTGGCAAGAGTGC CATTGCCCGGCACTCCGTCGTCATTGCCATCTTCAAGGCGGCATAGTTGGAGTTATGACCATTGTAGAGCATCATCTCCT TCGAATAATTGTTCCCCTTCACCCACATATTCAGAATCAAACACATCTGTTTCCCTTGCTAGTTTTCATTGCTATCCACC CAACAGTTTGCCTCCTCATCCTAGTGGAATGTCCTTGCTTCATAAGAAGAATACAAATTTCGACGATTATAACCCCTCAC CAAGCTTCTCTCCCTCTCCCTCTCCATCACCTCCCATATACAATTTGGGATCATTAGCATCAAAAGCACTTTTACGCTCT GAAAGTGCTCCCGTCTGCATACCTAATACTAAAGATTCTGATTCCCCTGGATACACTGATAGGCGTAATTTGCCTCCATC CTCTCCGCGTAGAGGTTTGAGGAATGTGATACAAACATGCACAACAACTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGT CTCAGAAGTATTCTGGAGCCAAGATAGTAGCTAACAGCTTACCGCAGATTTCATTTTCCAGGAGCTCTAGCAGGTCTTAT CAGGATGATTTTGATGATACTGATTTTACTTGTCCTTTTGATGTGGATGATGATGATATAACAGATCCTGGTAGCAGAGC GGAATCTTTTGATCATGGTCAAATAGCTGAGGTGCTTGAAGCTGGAAAATTCCTTCCTATCAGAAAGTCCCAAGATGCTG CAGTTGGTGCACTTGTACATATGTTGAAGAAAGCGGCACCTCTGCATCAAGACTTCTCGACATCTGAACACTTGTCACCG GGCACACGTCCCGAAACCTTGAGCAATAACAGCATTCAAGAGCCCAATCAGGTTGTAGATGGGCTAAATCAAGCGAGCAT CATGTCGACAATGAATAGGAAAACAACAGCTGATGCATTGGAAGAGTTCTACAGTTACAGAGAGATGAAAAACTTGTTAC TTATGCGCGGCAGTAAGCAACAGATATAG
Protein sequence (LotjaGi1g1v0316300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTHSEAAKLEQIITEFFAKSLHIILESRAISASSRNFSTVSSPSSSSSSSSSVRPRDKWFNLALRDCPAALENTELWR HGNMDPIVVDVVLVQRDQTLSFSPRRVLPRSSSLKERYPFCWNTMMDREELGVGVESERVVERWVVQYESRKPTRDSNSG SRRSSNTSLHALYKKSTLLLRSLYATVRLLPAYKIFRELNSNGKICAFTLAHRVSTFVEPFTSKEEAKMLKFGFTPVDTS SGRLCLSVMYCPSVSDVSSEPSTPMSPQVITDYVGSPMADPLRRYPSLPVARVPLPGTPSSLPSSRRHSWSYDHCRASSP SNNCSPSPTYSESNTSVSLASFHCYPPNSLPPHPSGMSLLHKKNTNFDDYNPSPSFSPSPSPSPPIYNLGSLASKALLRS ESAPVCIPNTKDSDSPGYTDRRNLPPSSPRRGLRNVIQTCTTTEKLFSLGKDESQKYSGAKIVANSLPQISFSRSSSRSY QDDFDDTDFTCPFDVDDDDITDPGSRAESFDHGQIAEVLEAGKFLPIRKSQDAAVGALVHMLKKAAPLHQDFSTSEHLSP GTRPETLSNNSIQEPNQVVDGLNQASIMSTMNRKTTADALEEFYSYREMKNLLLMRGSKQQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 621 | 620 | 1.4E-270 | – | |
| PANTHER | 2 | 621 | 620 | 1.4E-270 | ||
| Gene3D | 6 | 258 | 253 | 2.2E-48 | ||
| Pfam | 15 | 250 | 236 | 1.9E-38 | ||
| MobiDBLite | 355 | 388 | 34 | - | – | |
| MobiDBLite | 359 | 374 | 16 | - | – | |
| MobiDBLite | 404 | 433 | 30 | - | – | |
| MobiDBLite | 552 | 573 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Autophagosome assembly | The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm. | ||
| Biological process | Autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. | ||
| Cellular component | Atg1/ULK1 kinase complex | A protein complex consisting of Atg1 (or Atg1 homologs e.g. ULK1, ULK2 in mammals) and Atg13 along with other proteins that regulate its function (e.g. Atg17 in yeast or RB1CC1(FIP200) in mammals). This complex has serine/threonine protein kinase activity and is involved in autophagosome formation. |
Expression pattern of LotjaGi1g1v0316300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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