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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0319200 |
| Transcript ID | LotjaGi1g1v0319200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-binding ABC transporter; TAIR: AT4G33460.1 ABC transporter family protein; Swiss-Prot: sp|Q8H1R4|AB10I_ARATH ABC transporter I family member 10, chloroplastic; TrEMBL-Plants: tr|G7JBL0|G7JBL0_MEDTR ATP-binding ABC transporter; Found in the gene: LotjaGi1g1v0319200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76868978..76872169) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCTCCCTTCTCTCATTCGCTTCCCTGAGCGTCTTCTTGCTCCTCGTTGCTCAACACTTCCCACTAACACTATCAG GTTCTCCAATTTTTGTTTTTTCGTTCACTTTTCAGCTGGGCATTTTCTCGAACAGTTTGTGTACAAGCCTTAAACTTTGT TGTGTTTACCGATTGAAGAAGCTTGTTTATTTGTTATTTTTTCCTTCCAGGAGCAATAGCGTGGAGAATGTTGCAATTGT TGGCCGTAATCTGAATTTTTCCTTCACGGCAAGGCAAACAAATGATGTGCGAGTTCTCAGGGATTGTTCACTTCGCATTC CTTCTGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCAACCCTCTTGAAGGTACTATGTAAGCTACTG CTATGTGTTGTGTGTGAAATTGATAGTTCTTTTTTTAGTAGAATTTGGTAATGTAACCCAGATCATGTTTGTGCAGATTT TGGCTGGTCTCTTGGCTCCAACTTCAGGAACAGTGTATGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCAT CAGGTGCTACTTGGTTCATTGCCATTTTTCTGCTAAGCTTGAGCTTTAAATAGGGTGTTTGATCATTGACAGAAAGGTTA AATCTTTCGGGTCTTGGTTTCAAAAGGAAAATCTGTTTGTGTGTGAATGAAAATATAAGGAAAAATTTACTATATGATTA TTCAAAATTCAAATTCAGAAATGTGAACCTTAGTAAATTGAGAGCCATGTCGATATTTCTAAATATTAAGAGATGGAAGC ATGCAATTTGATATTATCAATGCTCATCATCATCATCATCAAGTGATACATTGTCAACCAGTCATTGATAAATTAATTAA CAGCTGAAACAACTAGCTTCACTTCCACAGCTAACTTAGTCAACTAACAAAATAACTTAACTACCATTACACCATCAAGG TGGGGAATATGTGTCTAAACTCTAAAGTTCCCAGCTTGCTGATTAATGCTTGAATCTGAGGTGATGGCAAAGATTTAGTG AACATGTCAGCTAAGTGATGCTATTCTTGACATGTACAAGTTTGGTGGAGTTAGCATTGACTAGTTCCCGAATAAAATGG TAGTCTATATCCATGTTCTTGGAGAATTTATGATGTCCCGGATAGGAAGCTAGCTGAATTGCTGATTGGTAGAGGAGGCT AAAACCTCAAAAACATGCAGAAGGTGTTGCTGCCAGATTATTTCACTGACAGTAGAGGATCATGAGTGGTATTCACTATT CAGCCTCTGCAGAGATTTAGAGACCGTGGATTGTTTCTTAGACTTCCAAGAAACAGGGGCGTCACCTAGGAAATGGCAAG AGCCAGCGTGGAGCGTCAGGTATCCAAGCGGCTGTCCTAACCGGGATCTGCATATGCTGTTAGACTTAGATGCATACAAG AATTTGCTGGAAAAAACAACCCTTGACCGGGTACTTCTTCAAATATTGCAACAAATGATGAATTCCTGAATGGCTTGAAG ATGTACAGGCCTAGAAGGCTGCATCGTGTATTGACTAAGTTTGTGTACTGTGTAAAAAATACATGGCCAGAAGATTGTTA AATACATCAACCTGCTTCTGAGTCTTCATATCTTCGATATTGGGAAGAATGAGTTATCGGATCACCATCATTTAAAGTCA GTTTAAGACTAGTTTCCATTGGCGGCTTAACTAGTTTCACATCTATGAAACCAGTGTCATCCAATAGTACCGCGATGCAT TTGTGCTGAGATAAAAATAAAAATAAAAACCTTCAATCCAAAACCTTTGCCTATTTCCAATCCAATGAAGTACTTGAGTT CACCTAACACCTTCAATTTGCATAAAGTCTGCACACCTCTTGAATTCTCTCAGGATCAGGTCCTGCTAGTATAATGTCAT CTACACTCGATTAGTTTCCTTCTAAATTTCCTTCATGTCAAAGCCTGGCAACTTGCTTAGTTTCTTTTTTCTCTACACTC CAGTCAATAATGAGTTTAATTTGCAATGGTGCTTGCTTATGAATTTGAATAATTTGATTACTTATGCTTTCTAAAATATA CTCCAATCTGATCTCCATTTGAATATTATCTTTATGCTTAATTCAGATGTTAAAACTTGAGTTTGTTCTCAATTTACCTG AAAAAACATCCACCAAAACTACACAGCCTGCATGTCCGTGTATGATGTATATACTACATAGTAAGTCTCTCAAGTGTGTA GCATTACATTTGTTGCAGGTGGTGATGCCCACAGTAGATGCTGATGTTGCATTTGGTCTTGGTAAATTCAACTTGCCCAA TGATGAGGTCAGATCTAAGGTGCAACGAGCTTTGCATGCTGTTGGCCTGTCTGACTACATGAAGGTATTATCAAAATTAT GGATTACAGCCTCAAGTACCCAAACAAATGTGTGAATGAACTTTCCCTTTGCTGCATTGTTCAGAGATCTGTCCAAACTC TGAGTGGCGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGCAAAGTTCTATTGTTGGATGAGCTA ACCACATTCTTAGACGAAACTGACCAGGTGATCTATAAATTGTGATGTTATATGCTTTTATACCATTTCTTTTGACACAC CTTTTATCTGCATCTGACCTGCAAATTGACAGAAAATTATGCCACCGGGGCAGTGTCTATTTTAGATTTCTTACATCTCA ATAAGTCTGCCCTTGTATTTCTAACATGAAAATGTGACTTCACTCTTCATGCCTACAGTTGAATCTGTTAATATTAGTGC ATGCTTAGAAATCCTTTTACTATTGATTCTGAAGTGAGAATCAATTCTGAAAAAAAAACTTATGTGAATAGCTGTTGGGT TTCAGAATTGATTATGATGAAAGAGAAACTGATCCAGACATGCTATATAGTTTTGGTTAAGACCAACTCTTTCTCATAGA TGGTTTGCACTCTTCTTTTAAGGTTGGGGTTATCAAAGCTGTTAGGAACACTTTGGACACCTCTGCAGATGTCACAGCAT TATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTGGTCAAGCAT GGAGATGCGACAAGCATAAGGAGTTTCATTGAAGCCAGGCAATCCGCTTATATAAACCAGATTAATTCCTAA
CDS sequence (LotjaGi1g1v0319200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTCCCTTCTCTCATTCGCTTCCCTGAGCGTCTTCTTGCTCCTCGTTGCTCAACACTTCCCACTAACACTATCAG GAGCAATAGCGTGGAGAATGTTGCAATTGTTGGCCGTAATCTGAATTTTTCCTTCACGGCAAGGCAAACAAATGATGTGC GAGTTCTCAGGGATTGTTCACTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCA ACCCTCTTGAAGATTTTGGCTGGTCTCTTGGCTCCAACTTCAGGAACAGTGTATGTGAATGAGCCTAAAAGTTTTGTTTT CCAAAATCCAGATCATCAGGTGGTGATGCCCACAGTAGATGCTGATGTTGCATTTGGTCTTGGTAAATTCAACTTGCCCA ATGATGAGGTCAGATCTAAGGTGCAACGAGCTTTGCATGCTGTTGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACT CTGAGTGGCGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGCAAAGTTCTATTGTTGGATGAGCT AACCACATTCTTAGACGAAACTGACCAGGTTGGGGTTATCAAAGCTGTTAGGAACACTTTGGACACCTCTGCAGATGTCA CAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTGGTC AAGCATGGAGATGCGACAAGCATAAGGAGTTTCATTGAAGCCAGGCAATCCGCTTATATAAACCAGATTAATTCCTAA
Protein sequence (LotjaGi1g1v0319200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLPSLIRFPERLLAPRCSTLPTNTIRSNSVENVAIVGRNLNFSFTARQTNDVRVLRDCSLRIPSGQFWMLLGPNGCGKS TLLKILAGLLAPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKFNLPNDEVRSKVQRALHAVGLSDYMKRSVQT LSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNTLDTSADVTALWVTHRLEELEYADGAIYMEDGKVV KHGDATSIRSFIEARQSAYINQINS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 29 | 253 | 225 | 2.6E-53 | ||
| Gene3D | 31 | 264 | 234 | 1.2E-59 | – | |
| PANTHER | 32 | 265 | 234 | 1.7E-99 | – | |
| PANTHER | 32 | 265 | 234 | 1.7E-99 | – | |
| ProSiteProfiles | 38 | 261 | 224 | 21.182 | ||
| CDD | 39 | 238 | 200 | 4.86888E-80 | – | |
| Pfam | 56 | 188 | 133 | 3.3E-27 | ||
| SMART | 65 | 238 | 174 | 5.6E-17 | ||
| ProSitePatterns | 161 | 175 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi1g1v0319200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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