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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0321000 |
| Transcript ID | LotjaGi1g1v0321000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600; TrEMBL-Plants: tr|G7JC33|G7JC33_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0321000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77125271..77127391) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAGACATGGGTTGGTTCGAAGAGTTGTGGGTGACCTTTCCTTCATGGACTCGTCACTCTTCGCGAAGATGTTAGA CTCGTGCGTTAGGTACAGGTCTGGTTTTGAGGTTCGTCGCGTCCATGCTCGAATTATTAAGACTCAGTTTTCATCTGAAG TCTTTATTCAGAACAGGCTTGTTGATGTTTATGGGAAATGTGGTTGTTTGGAGGATGCACGCAAGCTGTTTGATCGTATG CCGCAGAGGAACACTTTCAGTTGGAACGCGATATTAGGCGTGTTGGTGAAGTGTGGGGACCTTGATGAGGCTCTGGACGT CTTTAAGTGTATGCCTGAGCCTGACCAGTGCTCGTGGAATGCTATGGTGTCAGGTTTTGCCCAAAATGATCGCTTTGCGG AAGCTTTGAAATTTTTTGCTGGTATGCACCGTGAGGGTTTTATGCTCAATGAGTATTCGTTTGGCAGTGCTCTTAGTGCT TGTGCAGGGTTGACAGATTTGAATATGGGAGTTCAAGTCCATGCTTTGACATCAAAGTCTCGTTACTTGTCTGATGTTCA CATCGGTTCTGCTCTTGTTGATATGTACTCCAAGTGTGGGGCGGTGGCTTCTGCTCAAAGGGCTTTTGATGGCATGGGAG TGAGGAACAGAGTTTCTTGGAACAGTTTGATTACGTGCTATGAGCAAAATGGTCCTGCAGGAGAAGCTCTAGAGGTTTTT GTGAGGATGATGAATAGCGGGGTTGAACCTGATGAGGTTACTCTTGCCAGTGTGGTCAGTGCTTGCGCAAGCTTGTCAGC AATTAGGGAAGGTACACAAATTCATGCTCATGTTATGAAATGGGATAAATTTCGGAAGGACCTTGTGTTAGGAAATGCTT TGGTTGATATGTATGCAAAATGCAGTAGAGTTAATGAAGCTAGATTGGTTTTTGATAGGATGCCAATTAGGGATGTGGTG TCTGAAACCTCCATGGTTAGCGGATATGCAAGGGCTGCAAGTGTGAAAGATGCGAGATTGATGTTTTCAAATATGATGGA GAGGAATGTGGTGTCATGGAATGCGCTTATCGCAGGTTATATACATCATGGGGAGAATGAAGAGGCAGTTAGGCTTTTCC TCCTCCTAAAAAGGGAATCTGTCTGGCCAACCCATTACACCTTTGGCAATCTCCTCACCGTATGCGCAAATCTCGCTCAT CTGAAGCTCGGTAAACAGGCTCATGCTCACATTTTGAAGCACGGGTTTTGGTTCAAGTCTGGAGAAGAATCAGATATTTT TGTGGGGAATTCTCTCATTAACATGTACATGAAGTGTGGAATGGTTGAAGAAGGATGCTTGGTTTTTGAGCACATGGTAG AGAGGGATAATGTCTCATGGAATGCCATGATAATGGGATATGCACAAAATGGTTATGGTACAGAGGCCATTGAAATTTTC AAGAAAATGCTGGTATCTGGAGAAAAGCCAGACCGTGTTACTATGATCGAAGTTCTATCTGCGTGTAACCATGCCGGACT CGTTGAAGAAGGACGACATTACTTCCATTCAATGAGTGTTGATCATGGTTTAGTACCAATGAAGGACCACTATAGCTGCA TGGTTGATTTACTTGGTCGTGCGGGTTGCCTTGACGAAGCAAACAGTTTGATACAGGCAATGCCAATGGAGCCTGATGCT GTTGTCTGGGGATCTTTACTTGCTGCTTGTAAGGTTCATGGGAACATTACATTAGGGCAGTATGTGGCGGAAAAGCTCTT AGAGATTGATCCATCAAACTCAGGACCTTATGTTCTTCTTTCAAATATGTATGCTGAGCTTGGTAGATGGAAAGATGTGG CTATAGTCCGAAAACAAATGAGGCAACTGGGAGTGATTAAGCAACCTGGTTGTAGTTGGATTGAAGTTCAGAGTCATGTG CATGTTTTCATGGTGAAAGATAAAAGGCATCCTCTTAAGAAAGATATCTATTCAATTTTGAAAATTCTCACAGAACAGAT GAAGCGAGCTGGCTATGTGCCGGGAGTTGAGGATGATGAGATTTGTGAGGAGGAGGAAAGCGACTCTGAACTTAGCTTGC ATTGTGAAAGGGAAATGGCTGTAGATGCTGCAGTTGGATAA
CDS sequence (LotjaGi1g1v0321000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGACATGGGTTGGTTCGAAGAGTTGTGGGTGACCTTTCCTTCATGGACTCGTCACTCTTCGCGAAGATGTTAGA CTCGTGCGTTAGGTACAGGTCTGGTTTTGAGGTTCGTCGCGTCCATGCTCGAATTATTAAGACTCAGTTTTCATCTGAAG TCTTTATTCAGAACAGGCTTGTTGATGTTTATGGGAAATGTGGTTGTTTGGAGGATGCACGCAAGCTGTTTGATCGTATG CCGCAGAGGAACACTTTCAGTTGGAACGCGATATTAGGCGTGTTGGTGAAGTGTGGGGACCTTGATGAGGCTCTGGACGT CTTTAAGTGTATGCCTGAGCCTGACCAGTGCTCGTGGAATGCTATGGTGTCAGGTTTTGCCCAAAATGATCGCTTTGCGG AAGCTTTGAAATTTTTTGCTGGTATGCACCGTGAGGGTTTTATGCTCAATGAGTATTCGTTTGGCAGTGCTCTTAGTGCT TGTGCAGGGTTGACAGATTTGAATATGGGAGTTCAAGTCCATGCTTTGACATCAAAGTCTCGTTACTTGTCTGATGTTCA CATCGGTTCTGCTCTTGTTGATATGTACTCCAAGTGTGGGGCGGTGGCTTCTGCTCAAAGGGCTTTTGATGGCATGGGAG TGAGGAACAGAGTTTCTTGGAACAGTTTGATTACGTGCTATGAGCAAAATGGTCCTGCAGGAGAAGCTCTAGAGGTTTTT GTGAGGATGATGAATAGCGGGGTTGAACCTGATGAGGTTACTCTTGCCAGTGTGGTCAGTGCTTGCGCAAGCTTGTCAGC AATTAGGGAAGGTACACAAATTCATGCTCATGTTATGAAATGGGATAAATTTCGGAAGGACCTTGTGTTAGGAAATGCTT TGGTTGATATGTATGCAAAATGCAGTAGAGTTAATGAAGCTAGATTGGTTTTTGATAGGATGCCAATTAGGGATGTGGTG TCTGAAACCTCCATGGTTAGCGGATATGCAAGGGCTGCAAGTGTGAAAGATGCGAGATTGATGTTTTCAAATATGATGGA GAGGAATGTGGTGTCATGGAATGCGCTTATCGCAGGTTATATACATCATGGGGAGAATGAAGAGGCAGTTAGGCTTTTCC TCCTCCTAAAAAGGGAATCTGTCTGGCCAACCCATTACACCTTTGGCAATCTCCTCACCGTATGCGCAAATCTCGCTCAT CTGAAGCTCGGTAAACAGGCTCATGCTCACATTTTGAAGCACGGGTTTTGGTTCAAGTCTGGAGAAGAATCAGATATTTT TGTGGGGAATTCTCTCATTAACATGTACATGAAGTGTGGAATGGTTGAAGAAGGATGCTTGGTTTTTGAGCACATGGTAG AGAGGGATAATGTCTCATGGAATGCCATGATAATGGGATATGCACAAAATGGTTATGGTACAGAGGCCATTGAAATTTTC AAGAAAATGCTGGTATCTGGAGAAAAGCCAGACCGTGTTACTATGATCGAAGTTCTATCTGCGTGTAACCATGCCGGACT CGTTGAAGAAGGACGACATTACTTCCATTCAATGAGTGTTGATCATGGTTTAGTACCAATGAAGGACCACTATAGCTGCA TGGTTGATTTACTTGGTCGTGCGGGTTGCCTTGACGAAGCAAACAGTTTGATACAGGCAATGCCAATGGAGCCTGATGCT GTTGTCTGGGGATCTTTACTTGCTGCTTGTAAGGTTCATGGGAACATTACATTAGGGCAGTATGTGGCGGAAAAGCTCTT AGAGATTGATCCATCAAACTCAGGACCTTATGTTCTTCTTTCAAATATGTATGCTGAGCTTGGTAGATGGAAAGATGTGG CTATAGTCCGAAAACAAATGAGGCAACTGGGAGTGATTAAGCAACCTGGTTGTAGTTGGATTGAAGTTCAGAGTCATGTG CATGTTTTCATGGTGAAAGATAAAAGGCATCCTCTTAAGAAAGATATCTATTCAATTTTGAAAATTCTCACAGAACAGAT GAAGCGAGCTGGCTATGTGCCGGGAGTTGAGGATGATGAGATTTGTGAGGAGGAGGAAAGCGACTCTGAACTTAGCTTGC ATTGTGAAAGGGAAATGGCTGTAGATGCTGCAGTTGGATAA
Protein sequence (LotjaGi1g1v0321000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRHGLVRRVVGDLSFMDSSLFAKMLDSCVRYRSGFEVRRVHARIIKTQFSSEVFIQNRLVDVYGKCGCLEDARKLFDRM PQRNTFSWNAILGVLVKCGDLDEALDVFKCMPEPDQCSWNAMVSGFAQNDRFAEALKFFAGMHREGFMLNEYSFGSALSA CAGLTDLNMGVQVHALTSKSRYLSDVHIGSALVDMYSKCGAVASAQRAFDGMGVRNRVSWNSLITCYEQNGPAGEALEVF VRMMNSGVEPDEVTLASVVSACASLSAIREGTQIHAHVMKWDKFRKDLVLGNALVDMYAKCSRVNEARLVFDRMPIRDVV SETSMVSGYARAASVKDARLMFSNMMERNVVSWNALIAGYIHHGENEEAVRLFLLLKRESVWPTHYTFGNLLTVCANLAH LKLGKQAHAHILKHGFWFKSGEESDIFVGNSLINMYMKCGMVEEGCLVFEHMVERDNVSWNAMIMGYAQNGYGTEAIEIF KKMLVSGEKPDRVTMIEVLSACNHAGLVEEGRHYFHSMSVDHGLVPMKDHYSCMVDLLGRAGCLDEANSLIQAMPMEPDA VVWGSLLAACKVHGNITLGQYVAEKLLEIDPSNSGPYVLLSNMYAELGRWKDVAIVRKQMRQLGVIKQPGCSWIEVQSHV HVFMVKDKRHPLKKDIYSILKILTEQMKRAGYVPGVEDDEICEEEESDSELSLHCEREMAVDAAVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 169 | 157 | 2.7E-30 | ||
| ProSiteProfiles | 18 | 52 | 35 | 5.864 | ||
| PANTHER | 22 | 116 | 95 | 1.7E-138 | – | |
| ProSiteProfiles | 53 | 83 | 31 | 8.44 | ||
| Pfam | 58 | 84 | 27 | 2.3E-4 | ||
| TIGRFAM | 58 | 83 | 26 | 6.4E-4 | ||
| ProSiteProfiles | 84 | 114 | 31 | 9.624 | ||
| TIGRFAM | 86 | 109 | 24 | 7.6E-4 | ||
| Pfam | 86 | 112 | 27 | 1.3E-5 | ||
| PANTHER | 97 | 166 | 70 | 1.7E-138 | – | |
| Pfam | 114 | 162 | 49 | 1.2E-8 | ||
| ProSiteProfiles | 115 | 149 | 35 | 10.907 | ||
| TIGRFAM | 118 | 150 | 33 | 1.0E-6 | ||
| PANTHER | 156 | 275 | 120 | 1.7E-138 | – | |
| Gene3D | 170 | 269 | 100 | 2.3E-19 | ||
| ProSiteProfiles | 185 | 215 | 31 | 6.095 | ||
| Pfam | 216 | 263 | 48 | 7.6E-9 | ||
| ProSiteProfiles | 216 | 250 | 35 | 12.09 | ||
| TIGRFAM | 218 | 252 | 35 | 3.9E-7 | ||
| ProSiteProfiles | 251 | 286 | 36 | 6.007 | ||
| PANTHER | 266 | 348 | 83 | 1.7E-138 | – | |
| Gene3D | 270 | 420 | 151 | 8.9E-24 | ||
| ProSiteProfiles | 287 | 321 | 35 | 8.813 | ||
| Pfam | 292 | 315 | 24 | 0.026 | ||
| ProSiteProfiles | 323 | 348 | 26 | 5.152 | ||
| TIGRFAM | 323 | 351 | 29 | 0.0016 | ||
| PANTHER | 335 | 405 | 71 | 1.7E-138 | – | |
| Pfam | 348 | 396 | 49 | 2.2E-10 | ||
| ProSiteProfiles | 349 | 383 | 35 | 10.808 | ||
| ProSiteProfiles | 384 | 418 | 35 | 5.097 | ||
| PANTHER | 402 | 620 | 219 | 1.7E-138 | – | |
| Gene3D | 421 | 521 | 101 | 9.7E-24 | ||
| ProSiteProfiles | 425 | 455 | 31 | 8.901 | ||
| TIGRFAM | 430 | 456 | 27 | 4.0E-4 | ||
| Pfam | 430 | 455 | 26 | 5.1E-4 | ||
| ProSiteProfiles | 456 | 490 | 35 | 11.981 | ||
| TIGRFAM | 458 | 491 | 34 | 1.8E-7 | ||
| Pfam | 458 | 487 | 30 | 9.7E-9 | ||
| ProSiteProfiles | 491 | 526 | 36 | 7.3 | ||
| Gene3D | 522 | 671 | 150 | 1.2E-11 | ||
| ProSiteProfiles | 527 | 557 | 31 | 6.314 | ||
| Pfam | 530 | 555 | 26 | 0.024 | ||
| ProSiteProfiles | 559 | 589 | 31 | 5.185 | ||
| SUPERFAMILY | 566 | 612 | 47 | 7.32E-5 | ||
| ProSiteProfiles | 593 | 627 | 35 | 7.465 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0321000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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