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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0322900 |
| Transcript ID | LotjaGi1g1v0322900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PPL8|A0A0B2PPL8_GLYSO Putative E3 ubiquitin-protein ligase HERC4; Found in the gene: LotjaGi1g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77448184..77455586) extracted from Lotus japonicus Gifu genome v1.2.
CAGACAAGAAGATTGAATTTTGACAGTGTAAAAAGAGTGTTGAAGAAGCAGAAAAAATGGTTGGAGGTGCTGGCTCACCC CAACACCCCAATGGGTCCCCCCCCCCAACACATTGAATGCCATTGTCTCTCCATTATCTACCTCTCTCCTGGCCCCTCAT GAACTCCTCCTCCTCGTCAATTGTCTAGTCTTGTCCAATCTCTTCCCTATAATCAATCTCTCTTCTGTTCTGCTCTGCTC TGGTCTGCTTCTCTTCATTTCACTTCTACTTCTACTATTCACTCTCTCCTTCTTCCACTTGTCGCATCCAAATCAATGTT GTAAACTCCGTAAACTCCTGAGTACGATAAATCACACTCTTCACTTTCTTTCTTTCCCTTCCTTGTGTACGATCAACCAC TCACCTTTCATTTCTCTTTCTCTATCTATCTCTATCCCTGATTGTACTTCTTCCTAGAGAGTGTAAATGATGGTGGACGA CCAGGCTCAGGTTGAAGCCACCGCTGTGTCTCCACCTCGCCGTGTTCTTCTCATATCCGCCGGTGCTAGCCACTCCGTCG CTCTTCTCTGTAAGCTCACTCCCTGATTCATTAAAGCATCTCAAAAACTTACCTTTTTTGGTGCCATGATTTTTATATCA TGTTTCTAGCATGCCCTTTTGGTTTCTTTGCTTGATCACTGAAAATTTGTCACTTGGGTTGTGGAAAGTTTGCATTTTTA ATGGGAAAGTTGGAACCCTTTTTTGGTGCCATGATTTTTATATCATATTTCTAACATGCCCTTTTGGTTTTTTTGCTCGA TCACTGAGTATTTGCCAGAAAAGTTTGCATTTTTAATGGGAAAACTGGAACCCTTTTCTGGGTTTGAGGGATCGTGTTCT GATTTTAACTTGGATTGGTTTTGGTTTTGATGGTTTGCAGCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAGAGGATGG ACAGTTAGGTCATGGTGATACTGATGATAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTAGTTTCTG TTGCTTGTGGAGCTGATCATACTATTGCTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGTCTGCAATTTTT CTTTTCACTAATTTCTTGAAACTTCACTATACTCACAAATGCATTTTTGTTTACTTCTGTGATGGTCATCTATCATAACT GAAACCTTCTTTGACATTTCTGTTAGAATGGGATCAAGCAAATTTATGGATCCTAGTATTATTATAGATTAGATTAGATT AGATTCAGCTTCAAGATAGTGGTTTTTGTCATACTTTAACCTTTTTTAGAAATATCTGTAAGAAAATCAGTTCATTACAT CCTGGTTGTGTTGGCTATTTGCCCTTGGTGATTTGAAGACTTTTATATCAAACCTAGTTGTAAGATGTAAGTGTAACTAT TATAAAGTTAATCTTTTGAAAGATAATTTCTTTCTCAACTATACTTGTGAGTATTTCCCTCAATTCAAGAGTTAGCACTG CTTTTTTCCTTTTCACGGTCCGTTGATCTACTGATCTATGGATAGCTTGCTAAGTTTAAGCAGTCCTTTTGTACTCAACA ATTTATCCACATGAAAGATGAATTGAAGTTTGATTTGTGTGACAGCCAGAATTGGACATTTTATTAGATTGTATGAAACT CCTCAAGCATAATGAGTTTTCAGTTCTGGGAATATTATGTTTCATGTTGTTTCCAATAATCATTCAATTTCTGAAACATT TTTGTTCACATATAAAATACTGCTCAGATTATTTTCTGTTTTTTCCAGGGGTGACTTTGGACGGTTGGGTCATGGTAATT CTAGTGATTTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGATAGCCAC TGTTTAGCAGTTACCATGGAAGGCGAGGTGCAGAGGTTTGTAGTTCTAGACTAAATTTTTTGTTTTTCTCTGTCGATAAA GGTTTTGTTGCTTCATTGAGGGTATATATAGAAACTGATGATGCAGTATTATAGAACCTTTTTCTAATGCATGTTGATCC ATAGGCCCAATCTTGTCTTCTCTACTTACTGAAAGAAGAGTTTAAGAAAGCCTTTTGCACCGGAACAAACGAAGTTGCTA TGAATTATCCCATTTGATATTTGGGACAGATTCTTTATTATATACTTGTTACTTCAGTAGCTGTTAATCTGTTATTAATA TACTTCCTATGCAAATACTCCCATGTGGATTAGATCTGCTCCCTTGCACACTATACATGCATCTAGTTTAGTTTGAACTC TCCTCCAACTTGACTACATTGTCTAATATTACATTTTTAAAAGTATCTACACATACACTCCTTGTTTTCTTGTGTGAGGC TTAAGGGCATTTCTGTTGGTAGTTTGGAAGTGGTAGCCACAAGTCTTTTGGTTCATCATGAAATTGGTTGGTTCATTCTC TTTTCCTCTGACTTTTGTGCTTTTTTCCCTTTTCAACTCTACTCATTGAAGTTGGGGGCGGAATCAAAATGGTCAACTTG GACTTGGCACCGCAGATGACTCCCTTGTGCCACAAAAAATTCAAACATTTCAGGTACTCTTTTCAAAGACATTCATCAAG GCTATCTGTAATAAATAAACTCTATATTCCAGTTATACTAATCTTTAAACAATGATAAGTTATTTTTACATATATTTAGT TACTTCTCATCCACCCATTTTTTAAACCAGTCTAAAGAGGGATATAGCTATCTGTTTCTAATAGGACCTAGGAAAGAATT GTGAAGGGATTCTGTTAGGACCCAATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGG TTTATAAGGCCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAGATTTTTTA TCTTAATTTTCTTTTTTGAGTCTCAAACTTTACATTCAGACCATTTTGTTTTTAGTCCACATTCCTTGAATACTCAATAT ATCCACTTCTTTTGAGCCCATGTAAATACCATGTACGAGGTTCTCATTAGTATTGTCAATGTTCTTCTTTTTGCCAATGA TTAAAGCACCTAATCTTGACATTTTTACCAAAGAAATCTTGTATTTATGTTGCTTGCCATCTGACAAGGCTCATTCAGTA CATAGTCTCCATGACTTTCCAGTCCATTTTGCTTAGAATGCTCATTTACCCTGCCTTCTTGACTGTTTCGGCCCACTAAT TATTTACACATGCGGTAGATCCCTCAAAGAAACCATTCTCAGAACAATATTAAGCATTTGAATTGTTACAGACTTGCAGT TTTGATGTTTGCATCTCCCAATTCCTTAGCCTTTTTTTATTCTTTTTCTATCGGTTAAGAATCTTGGAACTGAATGGTAG AGAATTTGACCAATGTACTGGTCCTTGGAAAAGCACCAGTAACAATTTTGCATTTCATATTTAAAAAAATGAAAGGGAGA TGCAGTTAATAAAAAAAGGCAGTTATTGCACACTTGTGAAGAAATCAATAGTGAGACACTATAATATGTATGCATTGAAC TTTTAAAATATGATGCATCGAACAGATTATTTTATTAGTTATTGGGCTTATGAATTTTTTATATATTTGCAGGGAGTACC TATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCCATTACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCA GATATGGAAACTTGGGATTGGGAGATCGAAATGATCGCTGGATTCCTGAAAAAGTTTCTTCTGTTGATGTATGTCCTTAA ACTGGTCTCAGCTTACCCTTCCTGATTAATTTATGATTGCATCAGTTAGAATTTCGAACGTATGTGATTGGATGTATTGT TTTATTTCTGACAAAAGTTTGACTTGCTACTTTAATAGAGGAAACAGAATTTCCAGCTATTAACTTTTGTCATTGCTGCC GATTCTCTAGAAAATGTTAAGATTCATGTGTAATGGGTATCCATGCATACTAGTTGATGGAGATTTTTTTTCACCCCTCC TGCCTAATTCTTGCTTGTTTAAACTTTAAAGTTGCAGCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGGCATACTA TATCTGTTTCATCTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTTGGAGGAT TATCTTGTGCCTCACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTGGTCCTTTACTTTTAATTTTAATTTTA TGCTGAGATGGCAAATTCTCATATTATTTCGATGCATTGACATTTCCCTTCGCACTGCTTCTTCTGCTTGCTTAGGAGGT CATATTTTCCTCCAGTTTCATTTTTTGAATGCTGGATTATTTCTGGTTAGGGATTGACTAAAATACTTATTAAGGTTTTC ATCATAAATGTTACCCGTCCCACTGATTTGATTTTGTTCTTCCTTTCCATTGGAATATGGTTTTGTTAGTCACCAACCCC AATACCCCTGAATTAGCGTTAGTTAGTTAGTTTACATTAATCAGCAATTATAGAGGGTATGACAGTGTATAATAATAGGA GGGAAAGAGAGGGAAACATCTAGGTGTTTGCAAGGGAATTGGGGCTCTTCAGAAAGGGATGTTTGCAGACCCTCAAAGGT CTGCAACTTTGTAGTTTTTTCAATGGAGTTTTCCCCTTTTCTTTCTAATAAAATAGCAGGTTTTTGCTGAATTTCTGCCT ATAGTTTTCTTTGTTTGTTTCTGAACTTTGGTTGGACTTCTTCCAGGTATCAGGTGGTTGGAGGCATAGTATGGCACTCA CATCTTGTGGACAACTTTATGGATGGGGTTGGAATAAGGTTGGTAGAATTTTTTTATTCTTTCCATATGTTAATGTGACA TTTTGTATTATAACAAGATATTTTTGTTGATTTGCAAACACAATTAGTGAATAGTAACAGAATGCACATTGCTGAGACTA AATATAGGCTAATTTTTAGTGGGAAAAAATGTTGTCAGACTTTATTCTGTATATATAGCATTACAAGTGTTTTATAATTA ACATGTGTTTGGAAAATTGTTACCTATTTTTCTTCAATTGTAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGATCGCT CAGCTCCCGTGCAAGTGAAGTTTCCCCACGACCAGGTACTTCAAATTTGGTCTTCCCTTTCTTTGGATAGGATATTTTCG ACTGAGTATACTTGAAACTTTGATACCATTCTTCCCTTTCTTTTGGAAATTTTCGAGGGAGTTTCTTGAAAAGTCAATGT TATTCTTCAAATAATGACCAACTATTTTATTATTATTGGTGCACATTTTTATTGGCATGGCAGAAAGTAGTGCAGATCTC ATGTGGGTGGAGACACACAATTGCTGTTACTGAAAGAGCAAATGTATATTCTTGGGGAAGAGGCACAAATGGGCAACTTG GGCAAGGGGATACTGTTGACCGGTAATTGCAAATATTATTATATTTTGTTTGGATTACTATGCACACATTCATCGTTCAC TTTAATGCTTTCTCTTTCATATAAATGGTGATGCACTTAGCAGACTTTTATAGTCACAAAGTTATGTGCGAAAGGTGAAA CAAAATGTCAGTTTCGTTTTTTATTTCGGGGTTATGACAGAACGGAGGTTTGAACCTATGACTTACAAACTACCCAATCT CATCACCGTCCCATTCCTAGTGGTTTGTTAGTTATTCTAACTAATGGCTTCAAAAGATACCTTTAATCTGAAACAAATTA ACTAGTTCATTGAGAATAGAACCAAATATAACACTGCTGCTATTGATCTGTTAGAATTTCAATTTGGGTCAATGACCTTG GTCATAAGTTCTTATTATGACTGAGATATTAGGTGCTACTTATGCCACTCTTTAGTTCATGATGTTGCTTTTGGATTGTA GGAATTCTCCAAAGATTATTGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACACTGATCAA ATATCAGGTGCTTTGTTCTGCTCTTAAGCATTATGTTCCTTTGGCCATTGCTAATGTTAATACCGTTTGATAGTGTGATT TATATAACATCATTTAATTTTTTTATTTTATTTATACAATATGATATCAAGTTGCTAACTGTTTTATTCTTTCCCTACAC AGGAAAATCCTTGAGCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTAAGTACCTCATTTTAGCAAACAT TAGTCATCAGTACTGGAGTGAAGGGTGACTTAAAATATGTGAGGAAATACATTAATCTTTGCTGGTTCATGAAACCTAGG AAAAAAAGGATAGTTGTCTGTTAGGACTATCAATTTCATGGTATCAGAATCCTCTCATGTGGAAACTTCACATGACACTG TCATGTTCAAATATTTTGTGTGTCTCTCTCTTTATACTCATTAACTGGTGGGATCCTTTGAATATGTATGAAGAGAGATG CAGACACAATGTTTCACATGACAGTATCATGTAACATGAGAGGATCCTAATCTCTATTTCATGAGAGATAAGTGTCTCGT TTAACATGGCATGAGTGCTGTGCATCAAAATAGAGCACTGACTTGTATGATTTAGCAGGTCTCAGGGCAAACTGCTAATC CGGGCAATGGAGATAGGTTTGATCTTAGTGTCCCAGAAAGCGATGTCAAACGGATCCGAGTTTGATTAATCAAAAGGATG CATCATTCATTTGAGGAGAATGATGCATCCTTTTGATCTTTCTTCCCCATGAGTTCATAGGAGCCAGTCATCTGCCACTA CTATTAATTTGGCTTTCAATATGATGATTGTAAAGTCCACATTATGAGAAAGACTATGTTTGATCTCCTCTTATATATAT TACTATCAGTAAGCAAGGATACATTTAAATAGTTCATAGTTTTTTTTCCTTCTTAATTGCACTTTTTCTCGTAATTTGGT GATTTTGTGATCTTGGTTCCTCACTTTATTTTCGCAATTTTAGTTTCTCTAATTTTGCGACTGCGATTTTGGTCCCCTTA TTTTTCTTTCAGCAACTTTGGTCATCAGAATTTAGTGATCCCACAAGTTAGATCTCTTTTAGTTGTGCAAATATAGTAGG GCGATTTAAATTACGAAATCATTGAATTAGAGGACTATAATTGTAAAAATAAAGTAGTGAAACACAAATCACGGAATCAG TTAGACCAAAGTTATGGATAATTCCATGGAAAGGGGAGAAATAGGGCGTAGTAGATAGGTCAGATGTTGATATGCAAACC AGTTGCTTGAAAATGTTAGTTGGTAATGATTTTGGTTCCTCAC
CDS sequence (LotjaGi1g1v0322900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGGACGACCAGGCTCAGGTTGAAGCCACCGCTGTGTCTCCACCTCGCCGTGTTCTTCTCATATCCGCCGGTGC TAGCCACTCCGTCGCTCTTCTCTCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAGAGGATGGACAGTTAGGTCATGGTG ATACTGATGATAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTAGTTTCTGTTGCTTGTGGAGCTGAT CATACTATTGCTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGGGTGACTTTGGACGGTTGGGTCATGGTAA TTCTAGTGATTTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGATAGCC ACTGTTTAGCAGTTACCATGGAAGGCGAGGTGCAGAGTTGGGGGCGGAATCAAAATGGTCAACTTGGACTTGGCACCGCA GATGACTCCCTTGTGCCACAAAAAATTCAAACATTTCAGGGAGTACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAG TGTAGCCATTACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCAGATATGGAAACTTGGGATTGGGAGATCGAAATG ATCGCTGGATTCCTGAAAAAGTTTCTTCTGTTGATTTGCAGCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGGCAT ACTATATCTGTTTCATCTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTTGGA GGATTATCTTGTGCCTCACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTATCAGGTGGTTGGAGGCATAGTA TGGCACTCACATCTTGTGGACAACTTTATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGAT CGCTCAGCTCCCGTGCAAGTGAAGTTTCCCCACGACCAGAAAGTAGTGCAGATCTCATGTGGGTGGAGACACACAATTGC TGTTACTGAAAGAGCAAATGTATATTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCAAGGGGATACTGTTGACCGGA ATTCTCCAAAGATTATTGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACACTGATCAAATA TCAGGAAAATCCTTGAGCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTCTCAGGGCAAACTGCTAATCC GGGCAATGGAGATAGGTTTGATCTTAGTGTCCCAGAAAGCGATGTCAAACGGATCCGAGTTTGA
Protein sequence (LotjaGi1g1v0322900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVDDQAQVEATAVSPPRRVLLISAGASHSVALLSGNAVCSWGRGEDGQLGHGDTDDRLLPTLLSALDAQQVVSVACGAD HTIAYSDSRLEVYSWGWGDFGRLGHGNSSDLFIPQPIRALQGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTA DDSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDLQRDKMIMVACGWRH TISVSSSGGLFTYGWSKYGQLGHGDLEDYLVPHKLEALSDKLICQVSGGWRHSMALTSCGQLYGWGWNKFGQVGVGDNVD RSAPVQVKFPHDQKVVQISCGWRHTIAVTERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQI SGKSLSSLSERYAVVPDETVSGQTANPGNGDRFDLSVPESDVKRIRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 442 | 433 | 1.1E-242 | – | |
| PANTHER | 10 | 442 | 433 | 1.1E-242 | – | |
| SUPERFAMILY | 12 | 224 | 213 | 5.06E-69 | ||
| Gene3D | 16 | 394 | 379 | 3.1E-162 | ||
| ProSitePatterns | 23 | 33 | 11 | - | ||
| ProSiteProfiles | 37 | 88 | 52 | 16.293 | ||
| PRINTS | 38 | 54 | 17 | 4.9E-27 | ||
| Pfam | 39 | 84 | 46 | 6.3E-15 | ||
| ProSiteProfiles | 90 | 141 | 52 | 15.268 | ||
| Pfam | 91 | 138 | 48 | 8.0E-15 | ||
| PRINTS | 92 | 108 | 17 | 4.9E-27 | ||
| Pfam | 141 | 190 | 50 | 1.2E-15 | ||
| PRINTS | 142 | 158 | 17 | 4.9E-27 | ||
| ProSiteProfiles | 142 | 193 | 52 | 17.378 | ||
| ProSitePatterns | 180 | 190 | 11 | - | ||
| PRINTS | 180 | 196 | 17 | 4.9E-27 | ||
| Pfam | 193 | 242 | 50 | 4.0E-13 | ||
| ProSiteProfiles | 194 | 247 | 54 | 14.946 | ||
| PRINTS | 196 | 210 | 15 | 4.9E-27 | ||
| SUPERFAMILY | 229 | 383 | 155 | 7.59E-50 | ||
| ProSitePatterns | 234 | 244 | 11 | - | ||
| Pfam | 247 | 296 | 50 | 9.0E-12 | ||
| ProSiteProfiles | 248 | 299 | 52 | 12.976 | ||
| ProSitePatterns | 286 | 296 | 11 | - | ||
| PRINTS | 289 | 307 | 19 | 4.9E-27 | ||
| Pfam | 300 | 348 | 49 | 1.3E-15 | ||
| ProSiteProfiles | 300 | 351 | 52 | 16.675 | ||
| ProSitePatterns | 338 | 348 | 11 | - | ||
| PRINTS | 347 | 368 | 22 | 4.9E-27 | ||
| ProSiteProfiles | 352 | 399 | 48 | 10.605 | ||
| Pfam | 353 | 390 | 38 | 2.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0322900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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