Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0322900 |
| Transcript ID | LotjaGi1g1v0322900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1KBN0|I1KBN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77448817..77454547) extracted from Lotus japonicus Gifu genome v1.2.
TATATCATGTTTCTAGCATGCCCTTTTGGTTTCTTTGCTTGATCACTGAAAATTTGTCACTTGGGTTGTGGAAAGTTTGC ATTTTTAATGGGAAAGTTGGAACCCTTTTTTGGTGCCATGATTTTTATATCATATTTCTAACATGCCCTTTTGGTTTTTT TGCTCGATCACTGAGTATTTGCCAGAAAAGTTTGCATTTTTAATGGGAAAACTGGAACCCTTTTCTGGGTTTGAGGGATC GTGTTCTGATTTTAACTTGGATTGGTTTTGGTTTTGATGGTTTGCAGCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAG AGGATGGACAGTTAGGTCATGGTGATACTGATGATAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTA GTTTCTGTTGCTTGTGGAGCTGATCATACTATTGCTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGTCTGC AATTTTTCTTTTCACTAATTTCTTGAAACTTCACTATACTCACAAATGCATTTTTGTTTACTTCTGTGATGGTCATCTAT CATAACTGAAACCTTCTTTGACATTTCTGTTAGAATGGGATCAAGCAAATTTATGGATCCTAGTATTATTATAGATTAGA TTAGATTAGATTCAGCTTCAAGATAGTGGTTTTTGTCATACTTTAACCTTTTTTAGAAATATCTGTAAGAAAATCAGTTC ATTACATCCTGGTTGTGTTGGCTATTTGCCCTTGGTGATTTGAAGACTTTTATATCAAACCTAGTTGTAAGATGTAAGTG TAACTATTATAAAGTTAATCTTTTGAAAGATAATTTCTTTCTCAACTATACTTGTGAGTATTTCCCTCAATTCAAGAGTT AGCACTGCTTTTTTCCTTTTCACGGTCCGTTGATCTACTGATCTATGGATAGCTTGCTAAGTTTAAGCAGTCCTTTTGTA CTCAACAATTTATCCACATGAAAGATGAATTGAAGTTTGATTTGTGTGACAGCCAGAATTGGACATTTTATTAGATTGTA TGAAACTCCTCAAGCATAATGAGTTTTCAGTTCTGGGAATATTATGTTTCATGTTGTTTCCAATAATCATTCAATTTCTG AAACATTTTTGTTCACATATAAAATACTGCTCAGATTATTTTCTGTTTTTTCCAGGGGTGACTTTGGACGGTTGGGTCAT GGTAATTCTAGTGATTTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGA TAGCCACTGTTTAGCAGTTACCATGGAAGGCGAGGTGCAGAGGTTTGTAGTTCTAGACTAAATTTTTTGTTTTTCTCTGT CGATAAAGGTTTTGTTGCTTCATTGAGGGTATATATAGAAACTGATGATGCAGTATTATAGAACCTTTTTCTAATGCATG TTGATCCATAGGCCCAATCTTGTCTTCTCTACTTACTGAAAGAAGAGTTTAAGAAAGCCTTTTGCACCGGAACAAACGAA GTTGCTATGAATTATCCCATTTGATATTTGGGACAGATTCTTTATTATATACTTGTTACTTCAGTAGCTGTTAATCTGTT ATTAATATACTTCCTATGCAAATACTCCCATGTGGATTAGATCTGCTCCCTTGCACACTATACATGCATCTAGTTTAGTT TGAACTCTCCTCCAACTTGACTACATTGTCTAATATTACATTTTTAAAAGTATCTACACATACACTCCTTGTTTTCTTGT GTGAGGCTTAAGGGCATTTCTGTTGGTAGTTTGGAAGTGGTAGCCACAAGTCTTTTGGTTCATCATGAAATTGGTTGGTT CATTCTCTTTTCCTCTGACTTTTGTGCTTTTTTCCCTTTTCAACTCTACTCATTGAAGTTGGGGGCGGAATCAAAATGGT CAACTTGGACTTGGCACCGCAGATGACTCCCTTGTGCCACAAAAAATTCAAACATTTCAGGTACTCTTTTCAAAGACATT CATCAAGGCTATCTGTAATAAATAAACTCTATATTCCAGTTATACTAATCTTTAAACAATGATAAGTTATTTTTACATAT ATTTAGTTACTTCTCATCCACCCATTTTTTAAACCAGTCTAAAGAGGGATATAGCTATCTGTTTCTAATAGGACCTAGGA AAGAATTGTGAAGGGATTCTGTTAGGACCCAATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAA TGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAGA TTTTTTATCTTAATTTTCTTTTTTGAGTCTCAAACTTTACATTCAGACCATTTTGTTTTTAGTCCACATTCCTTGAATAC TCAATATATCCACTTCTTTTGAGCCCATGTAAATACCATGTACGAGGTTCTCATTAGTATTGTCAATGTTCTTCTTTTTG CCAATGATTAAAGCACCTAATCTTGACATTTTTACCAAAGAAATCTTGTATTTATGTTGCTTGCCATCTGACAAGGCTCA TTCAGTACATAGTCTCCATGACTTTCCAGTCCATTTTGCTTAGAATGCTCATTTACCCTGCCTTCTTGACTGTTTCGGCC CACTAATTATTTACACATGCGGTAGATCCCTCAAAGAAACCATTCTCAGAACAATATTAAGCATTTGAATTGTTACAGAC TTGCAGTTTTGATGTTTGCATCTCCCAATTCCTTAGCCTTTTTTTATTCTTTTTCTATCGGTTAAGAATCTTGGAACTGA ATGGTAGAGAATTTGACCAATGTACTGGTCCTTGGAAAAGCACCAGTAACAATTTTGCATTTCATATTTAAAAAAATGAA AGGGAGATGCAGTTAATAAAAAAAGGCAGTTATTGCACACTTGTGAAGAAATCAATAGTGAGACACTATAATATGTATGC ATTGAACTTTTAAAATATGATGCATCGAACAGATTATTTTATTAGTTATTGGGCTTATGAATTTTTTATATATTTGCAGG GAGTACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCCATTACTGAAAATGGAGAACTGTATGGATGGGGT TGGGGCAGATATGGAAACTTGGGATTGGGAGATCGAAATGATCGCTGGATTCCTGAAAAAGTTTCTTCTGTTGATGTATG TCCTTAAACTGGTCTCAGCTTACCCTTCCTGATTAATTTATGATTGCATCAGTTAGAATTTCGAACGTATGTGATTGGAT GTATTGTTTTATTTCTGACAAAAGTTTGACTTGCTACTTTAATAGAGGAAACAGAATTTCCAGCTATTAACTTTTGTCAT TGCTGCCGATTCTCTAGAAAATGTTAAGATTCATGTGTAATGGGTATCCATGCATACTAGTTGATGGAGATTTTTTTTCA CCCCTCCTGCCTAATTCTTGCTTGTTTAAACTTTAAAGTTGCAGCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGG CATACTATATCTGTTTCATCTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTT GGAGGATTATCTTGTGCCTCACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTGGTCCTTTACTTTTAATTTT AATTTTATGCTGAGATGGCAAATTCTCATATTATTTCGATGCATTGACATTTCCCTTCGCACTGCTTCTTCTGCTTGCTT AGGAGGTCATATTTTCCTCCAGTTTCATTTTTTGAATGCTGGATTATTTCTGGTTAGGGATTGACTAAAATACTTATTAA GGTTTTCATCATAAATGTTACCCGTCCCACTGATTTGATTTTGTTCTTCCTTTCCATTGGAATATGGTTTTGTTAGTCAC CAACCCCAATACCCCTGAATTAGCGTTAGTTAGTTAGTTTACATTAATCAGCAATTATAGAGGGTATGACAGTGTATAAT AATAGGAGGGAAAGAGAGGGAAACATCTAGGTGTTTGCAAGGGAATTGGGGCTCTTCAGAAAGGGATGTTTGCAGACCCT CAAAGGTCTGCAACTTTGTAGTTTTTTCAATGGAGTTTTCCCCTTTTCTTTCTAATAAAATAGCAGGTTTTTGCTGAATT TCTGCCTATAGTTTTCTTTGTTTGTTTCTGAACTTTGGTTGGACTTCTTCCAGGTATCAGGTGGTTGGAGGCATAGTATG GCACTCACATCTTGTGGACAACTTTATGGATGGGGTTGGAATAAGGTTGGTAGAATTTTTTTATTCTTTCCATATGTTAA TGTGACATTTTGTATTATAACAAGATATTTTTGTTGATTTGCAAACACAATTAGTGAATAGTAACAGAATGCACATTGCT GAGACTAAATATAGGCTAATTTTTAGTGGGAAAAAATGTTGTCAGACTTTATTCTGTATATATAGCATTACAAGTGTTTT ATAATTAACATGTGTTTGGAAAATTGTTACCTATTTTTCTTCAATTGTAGTTTGGACAGGTTGGAGTTGGTGACAATGTT GATCGCTCAGCTCCCGTGCAAGTGAAGTTTCCCCACGACCAGGTACTTCAAATTTGGTCTTCCCTTTCTTTGGATAGGAT ATTTTCGACTGAGTATACTTGAAACTTTGATACCATTCTTCCCTTTCTTTTGGAAATTTTCGAGGGAGTTTCTTGAAAAG TCAATGTTATTCTTCAAATAATGACCAACTATTTTATTATTATTGGTGCACATTTTTATTGGCATGGCAGAAAGTAGTGC AGATCTCATGTGGGTGGAGACACACAATTGCTGTTACTGAAAGAGCAAATGTATATTCTTGGGGAAGAGGCACAAATGGG CAACTTGGGCAAGGGGATACTGTTGACCGGTAATTGCAAATATTATTATATTTTGTTTGGATTACTATGCACACATTCAT CGTTCACTTTAATGCTTTCTCTTTCATATAAATGGTGATGCACTTAGCAGACTTTTATAGTCACAAAGTTATGTGCGAAA GGTGAAACAAAATGTCAGTTTCGTTTTTTATTTCGGGGTTATGACAGAACGGAGGTTTGAACCTATGACTTACAAACTAC CCAATCTCATCACCGTCCCATTCCTAGTGGTTTGTTAGTTATTCTAACTAATGGCTTCAAAAGATACCTTTAATCTGAAA CAAATTAACTAGTTCATTGAGAATAGAACCAAATATAACACTGCTGCTATTGATCTGTTAGAATTTCAATTTGGGTCAAT GACCTTGGTCATAAGTTCTTATTATGACTGAGATATTAGGTGCTACTTATGCCACTCTTTAGTTCATGATGTTGCTTTTG GATTGTAGGAATTCTCCAAAGATTATTGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACAC TGATCAAATATCAGGTGCTTTGTTCTGCTCTTAAGCATTATGTTCCTTTGGCCATTGCTAATGTTAATACCGTTTGATAG TGTGATTTATATAACATCATTTAATTTTTTTATTTTATTTATACAATATGATATCAAGTTGCTAACTGTTTTATTCTTTC CCTACACAGGAAAATCCTTGAGCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTAAGTACCTCATTTTAG CAAACATTAGTCATCAGTACTGGAGTGAAGGGTGACTTAAAATATGTGAGG
CDS sequence (LotjaGi1g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTAGCATCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAGAGGATGGACAGTTAGGTCATGGTGATACTGATGA TAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTAGTTTCTGTTGCTTGTGGAGCTGATCATACTATTG CTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGGGTGACTTTGGACGGTTGGGTCATGGTAATTCTAGTGAT TTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGATAGCCACTGTTTAGC AGTTACCATGGAAGGCGAGGTGCAGAGTTGGGGGCGGAATCAAAATGGTCAACTTGGACTTGGCACCGCAGATGACTCCC TTGTGCCACAAAAAATTCAAACATTTCAGGGAGTACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCCATT ACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCAGATATGGAAACTTGGGATTGGGAGATCGAAATGATCGCTGGAT TCCTGAAAAAGTTTCTTCTGTTGATCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGGCATACTATATCTGTTTCAT CTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTTGGAGGATTATCTTGTGCCT CACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTATCAGGTGGTTGGAGGCATAGTATGGCACTCACATCTTG TGGACAACTTTATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGATCGCTCAGCTCCCGTGC AAGTGAAGTTTCCCCACGACCAGAAAGTAGTGCAGATCTCATGTGGGTGGAGACACACAATTGCTGTTACTGAAAGAGCA AATGTATATTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCAAGGGGATACTGTTGACCGGAATTCTCCAAAGATTAT TGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACACTGATCAAATATCAGGAAAATCCTTGA GCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTAAGTACCTCATTTTAG
Protein sequence (LotjaGi1g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLASGNAVCSWGRGEDGQLGHGDTDDRLLPTLLSALDAQQVVSVACGADHTIAYSDSRLEVYSWGWGDFGRLGHGNSSD LFIPQPIRALQGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTADDSLVPQKIQTFQGVPIKMVAAGAEHSVAI TENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDRDKMIMVACGWRHTISVSSSGGLFTYGWSKYGQLGHGDLEDYLVP HKLEALSDKLICQVSGGWRHSMALTSCGQLYGWGWNKFGQVGVGDNVDRSAPVQVKFPHDQKVVQISCGWRHTIAVTERA NVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSLSSLSERYAVVPDETVSTSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 362 | 362 | 7.0E-158 | ||
| SUPERFAMILY | 2 | 193 | 192 | 7.76E-63 | ||
| PANTHER | 4 | 391 | 388 | 5.2E-226 | – | |
| PANTHER | 4 | 391 | 388 | 5.2E-226 | – | |
| ProSiteProfiles | 7 | 58 | 52 | 16.293 | ||
| PRINTS | 8 | 24 | 17 | 2.2E-27 | ||
| Pfam | 9 | 54 | 46 | 5.3E-15 | ||
| ProSiteProfiles | 60 | 111 | 52 | 15.268 | ||
| Pfam | 61 | 108 | 48 | 6.7E-15 | ||
| PRINTS | 62 | 78 | 17 | 2.2E-27 | ||
| Pfam | 111 | 160 | 50 | 1.0E-15 | ||
| PRINTS | 112 | 128 | 17 | 2.2E-27 | ||
| ProSiteProfiles | 112 | 163 | 52 | 17.378 | ||
| SUPERFAMILY | 135 | 351 | 217 | 1.03E-69 | ||
| PRINTS | 150 | 166 | 17 | 2.2E-27 | ||
| ProSitePatterns | 150 | 160 | 11 | - | ||
| Pfam | 163 | 210 | 48 | 2.4E-14 | ||
| ProSiteProfiles | 164 | 215 | 52 | 15.308 | ||
| PRINTS | 166 | 180 | 15 | 2.2E-27 | ||
| ProSitePatterns | 202 | 212 | 11 | - | ||
| Pfam | 215 | 264 | 50 | 7.5E-12 | ||
| ProSiteProfiles | 216 | 267 | 52 | 12.976 | ||
| ProSitePatterns | 254 | 264 | 11 | - | ||
| PRINTS | 257 | 275 | 19 | 2.2E-27 | ||
| ProSiteProfiles | 268 | 319 | 52 | 16.675 | ||
| Pfam | 268 | 316 | 49 | 1.0E-15 | ||
| ProSitePatterns | 306 | 316 | 11 | - | ||
| PRINTS | 315 | 336 | 22 | 2.2E-27 | ||
| ProSiteProfiles | 320 | 367 | 48 | 10.605 | ||
| Pfam | 321 | 358 | 38 | 1.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0322900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…