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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0322900 |
| Transcript ID | LotjaGi1g1v0322900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0S3RFR2|A0A0S3RFR2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77448817..77454547) extracted from Lotus japonicus Gifu genome v1.2.
TATATCATGTTTCTAGCATGCCCTTTTGGTTTCTTTGCTTGATCACTGAAAATTTGTCACTTGGGTTGTGGAAAGTTTGC ATTTTTAATGGGAAAGTTGGAACCCTTTTTTGGTGCCATGATTTTTATATCATATTTCTAACATGCCCTTTTGGTTTTTT TGCTCGATCACTGAGTATTTGCCAGAAAAGTTTGCATTTTTAATGGGAAAACTGGAACCCTTTTCTGGGTTTGAGGGATC GTGTTCTGATTTTAACTTGGATTGGTTTTGGTTTTGATGGTTTGCAGCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAG AGGATGGACAGTTAGGTCATGGTGATACTGATGATAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTA GTTTCTGTTGCTTGTGGAGCTGATCATACTATTGCTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGTCTGC AATTTTTCTTTTCACTAATTTCTTGAAACTTCACTATACTCACAAATGCATTTTTGTTTACTTCTGTGATGGTCATCTAT CATAACTGAAACCTTCTTTGACATTTCTGTTAGAATGGGATCAAGCAAATTTATGGATCCTAGTATTATTATAGATTAGA TTAGATTAGATTCAGCTTCAAGATAGTGGTTTTTGTCATACTTTAACCTTTTTTAGAAATATCTGTAAGAAAATCAGTTC ATTACATCCTGGTTGTGTTGGCTATTTGCCCTTGGTGATTTGAAGACTTTTATATCAAACCTAGTTGTAAGATGTAAGTG TAACTATTATAAAGTTAATCTTTTGAAAGATAATTTCTTTCTCAACTATACTTGTGAGTATTTCCCTCAATTCAAGAGTT AGCACTGCTTTTTTCCTTTTCACGGTCCGTTGATCTACTGATCTATGGATAGCTTGCTAAGTTTAAGCAGTCCTTTTGTA CTCAACAATTTATCCACATGAAAGATGAATTGAAGTTTGATTTGTGTGACAGCCAGAATTGGACATTTTATTAGATTGTA TGAAACTCCTCAAGCATAATGAGTTTTCAGTTCTGGGAATATTATGTTTCATGTTGTTTCCAATAATCATTCAATTTCTG AAACATTTTTGTTCACATATAAAATACTGCTCAGATTATTTTCTGTTTTTTCCAGGGGTGACTTTGGACGGTTGGGTCAT GGTAATTCTAGTGATTTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGA TAGCCACTGTTTAGCAGTTACCATGGAAGGCGAGGTGCAGAGGTTTGTAGTTCTAGACTAAATTTTTTGTTTTTCTCTGT CGATAAAGGTTTTGTTGCTTCATTGAGGGTATATATAGAAACTGATGATGCAGTATTATAGAACCTTTTTCTAATGCATG TTGATCCATAGGCCCAATCTTGTCTTCTCTACTTACTGAAAGAAGAGTTTAAGAAAGCCTTTTGCACCGGAACAAACGAA GTTGCTATGAATTATCCCATTTGATATTTGGGACAGATTCTTTATTATATACTTGTTACTTCAGTAGCTGTTAATCTGTT ATTAATATACTTCCTATGCAAATACTCCCATGTGGATTAGATCTGCTCCCTTGCACACTATACATGCATCTAGTTTAGTT TGAACTCTCCTCCAACTTGACTACATTGTCTAATATTACATTTTTAAAAGTATCTACACATACACTCCTTGTTTTCTTGT GTGAGGCTTAAGGGCATTTCTGTTGGTAGTTTGGAAGTGGTAGCCACAAGTCTTTTGGTTCATCATGAAATTGGTTGGTT CATTCTCTTTTCCTCTGACTTTTGTGCTTTTTTCCCTTTTCAACTCTACTCATTGAAGTTGGGGGCGGAATCAAAATGGT CAACTTGGACTTGGCACCGCAGATGACTCCCTTGTGCCACAAAAAATTCAAACATTTCAGGTACTCTTTTCAAAGACATT CATCAAGGCTATCTGTAATAAATAAACTCTATATTCCAGTTATACTAATCTTTAAACAATGATAAGTTATTTTTACATAT ATTTAGTTACTTCTCATCCACCCATTTTTTAAACCAGTCTAAAGAGGGATATAGCTATCTGTTTCTAATAGGACCTAGGA AAGAATTGTGAAGGGATTCTGTTAGGACCCAATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAA TGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAGA TTTTTTATCTTAATTTTCTTTTTTGAGTCTCAAACTTTACATTCAGACCATTTTGTTTTTAGTCCACATTCCTTGAATAC TCAATATATCCACTTCTTTTGAGCCCATGTAAATACCATGTACGAGGTTCTCATTAGTATTGTCAATGTTCTTCTTTTTG CCAATGATTAAAGCACCTAATCTTGACATTTTTACCAAAGAAATCTTGTATTTATGTTGCTTGCCATCTGACAAGGCTCA TTCAGTACATAGTCTCCATGACTTTCCAGTCCATTTTGCTTAGAATGCTCATTTACCCTGCCTTCTTGACTGTTTCGGCC CACTAATTATTTACACATGCGGTAGATCCCTCAAAGAAACCATTCTCAGAACAATATTAAGCATTTGAATTGTTACAGAC TTGCAGTTTTGATGTTTGCATCTCCCAATTCCTTAGCCTTTTTTTATTCTTTTTCTATCGGTTAAGAATCTTGGAACTGA ATGGTAGAGAATTTGACCAATGTACTGGTCCTTGGAAAAGCACCAGTAACAATTTTGCATTTCATATTTAAAAAAATGAA AGGGAGATGCAGTTAATAAAAAAAGGCAGTTATTGCACACTTGTGAAGAAATCAATAGTGAGACACTATAATATGTATGC ATTGAACTTTTAAAATATGATGCATCGAACAGATTATTTTATTAGTTATTGGGCTTATGAATTTTTTATATATTTGCAGG GAGTACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCCATTACTGAAAATGGAGAACTGTATGGATGGGGT TGGGGCAGATATGGAAACTTGGGATTGGGAGATCGAAATGATCGCTGGATTCCTGAAAAAGTTTCTTCTGTTGATGTATG TCCTTAAACTGGTCTCAGCTTACCCTTCCTGATTAATTTATGATTGCATCAGTTAGAATTTCGAACGTATGTGATTGGAT GTATTGTTTTATTTCTGACAAAAGTTTGACTTGCTACTTTAATAGAGGAAACAGAATTTCCAGCTATTAACTTTTGTCAT TGCTGCCGATTCTCTAGAAAATGTTAAGATTCATGTGTAATGGGTATCCATGCATACTAGTTGATGGAGATTTTTTTTCA CCCCTCCTGCCTAATTCTTGCTTGTTTAAACTTTAAAGTTGCAGCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGG CATACTATATCTGTTTCATCTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTT GGAGGATTATCTTGTGCCTCACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTGGTCCTTTACTTTTAATTTT AATTTTATGCTGAGATGGCAAATTCTCATATTATTTCGATGCATTGACATTTCCCTTCGCACTGCTTCTTCTGCTTGCTT AGGAGGTCATATTTTCCTCCAGTTTCATTTTTTGAATGCTGGATTATTTCTGGTTAGGGATTGACTAAAATACTTATTAA GGTTTTCATCATAAATGTTACCCGTCCCACTGATTTGATTTTGTTCTTCCTTTCCATTGGAATATGGTTTTGTTAGTCAC CAACCCCAATACCCCTGAATTAGCGTTAGTTAGTTAGTTTACATTAATCAGCAATTATAGAGGGTATGACAGTGTATAAT AATAGGAGGGAAAGAGAGGGAAACATCTAGGTGTTTGCAAGGGAATTGGGGCTCTTCAGAAAGGGATGTTTGCAGACCCT CAAAGGTCTGCAACTTTGTAGTTTTTTCAATGGAGTTTTCCCCTTTTCTTTCTAATAAAATAGCAGGTTTTTGCTGAATT TCTGCCTATAGTTTTCTTTGTTTGTTTCTGAACTTTGGTTGGACTTCTTCCAGGTATCAGGTGGTTGGAGGCATAGTATG GCACTCACATCTTGTGGACAACTTTATGGATGGGGTTGGAATAAGGTTGGTAGAATTTTTTTATTCTTTCCATATGTTAA TGTGACATTTTGTATTATAACAAGATATTTTTGTTGATTTGCAAACACAATTAGTGAATAGTAACAGAATGCACATTGCT GAGACTAAATATAGGCTAATTTTTAGTGGGAAAAAATGTTGTCAGACTTTATTCTGTATATATAGCATTACAAGTGTTTT ATAATTAACATGTGTTTGGAAAATTGTTACCTATTTTTCTTCAATTGTAGTTTGGACAGGTTGGAGTTGGTGACAATGTT GATCGCTCAGCTCCCGTGCAAGTGAAGTTTCCCCACGACCAGGTACTTCAAATTTGGTCTTCCCTTTCTTTGGATAGGAT ATTTTCGACTGAGTATACTTGAAACTTTGATACCATTCTTCCCTTTCTTTTGGAAATTTTCGAGGGAGTTTCTTGAAAAG TCAATGTTATTCTTCAAATAATGACCAACTATTTTATTATTATTGGTGCACATTTTTATTGGCATGGCAGAAAGTAGTGC AGATCTCATGTGGGTGGAGACACACAATTGCTGTTACTGAAAGAGCAAATGTATATTCTTGGGGAAGAGGCACAAATGGG CAACTTGGGCAAGGGGATACTGTTGACCGGTAATTGCAAATATTATTATATTTTGTTTGGATTACTATGCACACATTCAT CGTTCACTTTAATGCTTTCTCTTTCATATAAATGGTGATGCACTTAGCAGACTTTTATAGTCACAAAGTTATGTGCGAAA GGTGAAACAAAATGTCAGTTTCGTTTTTTATTTCGGGGTTATGACAGAACGGAGGTTTGAACCTATGACTTACAAACTAC CCAATCTCATCACCGTCCCATTCCTAGTGGTTTGTTAGTTATTCTAACTAATGGCTTCAAAAGATACCTTTAATCTGAAA CAAATTAACTAGTTCATTGAGAATAGAACCAAATATAACACTGCTGCTATTGATCTGTTAGAATTTCAATTTGGGTCAAT GACCTTGGTCATAAGTTCTTATTATGACTGAGATATTAGGTGCTACTTATGCCACTCTTTAGTTCATGATGTTGCTTTTG GATTGTAGGAATTCTCCAAAGATTATTGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACAC TGATCAAATATCAGGTGCTTTGTTCTGCTCTTAAGCATTATGTTCCTTTGGCCATTGCTAATGTTAATACCGTTTGATAG TGTGATTTATATAACATCATTTAATTTTTTTATTTTATTTATACAATATGATATCAAGTTGCTAACTGTTTTATTCTTTC CCTACACAGGAAAATCCTTGAGCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTAAGTACCTCATTTTAG CAAACATTAGTCATCAGTACTGGAGTGAAGGGTGACTTAAAATATGTGAGG
CDS sequence (LotjaGi1g1v0322900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTAGCATCTGGAAATGCTGTTTGCTCGTGGGGTCGTGGAGAGGATGGACAGTTAGGTCATGGTGATACTGATGA TAGGCTTTTGCCTACTCTACTCAGTGCATTGGATGCTCAACAAGTAGTTTCTGTTGCTTGTGGAGCTGATCATACTATTG CTTATTCAGATTCACGCCTGGAAGTGTATAGTTGGGGATGGGGTGACTTTGGACGGTTGGGTCATGGTAATTCTAGTGAT TTGTTCATTCCTCAGCCTATTAGAGCATTACAAGGTATAAGGATAAAGCAAATTGCTTGCGGTGATAGCCACTGTTTAGC AGTTACCATGGAAGGCGAGGTGCAGAGTTGGGGGCGGAATCAAAATGGTCAACTTGGACTTGGCACCGCAGATGACTCCC TTGTGCCACAAAAAATTCAAACATTTCAGGGAGTACCTATCAAAATGGTTGCTGCCGGTGCTGAACATAGTGTAGCCATT ACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCAGATATGGAAACTTGGGATTGGGAGATCGAAATGATCGCTGGAT TCCTGAAAAAGTTTCTTCTGTTGATCGTGACAAGATGATCATGGTTGCTTGTGGCTGGCGGCATACTATATCTGTTTCAT CTTCTGGTGGCTTGTTCACATATGGATGGAGCAAATATGGCCAGCTAGGACATGGAGATTTGGAGGATTATCTTGTGCCT CACAAGCTTGAAGCCTTGAGTGACAAGTTAATTTGTCAGGTATCAGGTGGTTGGAGGCATAGTATGGCACTCACATCTTG TGGACAACTTTATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGATCGCTCAGCTCCCGTGC AAGTGAAGTTTCCCCACGACCAGGTACTTCAAATTAAAGTAGTGCAGATCTCATGTGGGTGGAGACACACAATTGCTGTT ACTGAAAGAGCAAATGTATATTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCAAGGGGATACTGTTGACCGGAATTC TCCAAAGATTATTGAGGCTTTGAGTGTTGATGGATCTTGTGGGCAGCACATAGAATCCTCAAACACTGATCAAATATCAG GAAAATCCTTGAGCTCCTTGTCTGAGAGATATGCAGTTGTTCCAGATGAAACTGTAAGTACCTCATTTTAG
Protein sequence (LotjaGi1g1v0322900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLASGNAVCSWGRGEDGQLGHGDTDDRLLPTLLSALDAQQVVSVACGADHTIAYSDSRLEVYSWGWGDFGRLGHGNSSD LFIPQPIRALQGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTADDSLVPQKIQTFQGVPIKMVAAGAEHSVAI TENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDRDKMIMVACGWRHTISVSSSGGLFTYGWSKYGQLGHGDLEDYLVP HKLEALSDKLICQVSGGWRHSMALTSCGQLYGWGWNKFGQVGVGDNVDRSAPVQVKFPHDQVLQIKVVQISCGWRHTIAV TERANVYSWGRGTNGQLGQGDTVDRNSPKIIEALSVDGSCGQHIESSNTDQISGKSLSSLSERYAVVPDETVSTSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 366 | 366 | 5.7E-156 | ||
| SUPERFAMILY | 3 | 37 | 35 | 1.26E-5 | ||
| PANTHER | 4 | 395 | 392 | 3.1E-223 | – | |
| PANTHER | 4 | 395 | 392 | 3.1E-223 | – | |
| ProSiteProfiles | 7 | 58 | 52 | 16.293 | ||
| PRINTS | 8 | 24 | 17 | 2.4E-27 | ||
| Pfam | 9 | 54 | 46 | 5.4E-15 | ||
| ProSiteProfiles | 60 | 111 | 52 | 15.268 | ||
| SUPERFAMILY | 61 | 358 | 298 | 1.18E-95 | ||
| Pfam | 61 | 108 | 48 | 6.8E-15 | ||
| PRINTS | 62 | 78 | 17 | 2.4E-27 | ||
| Pfam | 111 | 160 | 50 | 1.0E-15 | ||
| ProSiteProfiles | 112 | 163 | 52 | 17.378 | ||
| PRINTS | 112 | 128 | 17 | 2.4E-27 | ||
| ProSitePatterns | 150 | 160 | 11 | - | ||
| PRINTS | 150 | 166 | 17 | 2.4E-27 | ||
| Pfam | 163 | 210 | 48 | 2.4E-14 | ||
| ProSiteProfiles | 164 | 215 | 52 | 15.308 | ||
| PRINTS | 166 | 180 | 15 | 2.4E-27 | ||
| ProSitePatterns | 202 | 212 | 11 | - | ||
| Pfam | 215 | 264 | 50 | 7.6E-12 | ||
| ProSiteProfiles | 216 | 267 | 52 | 12.976 | ||
| ProSitePatterns | 254 | 264 | 11 | - | ||
| PRINTS | 257 | 275 | 19 | 2.4E-27 | ||
| ProSiteProfiles | 268 | 323 | 56 | 16.273 | ||
| Pfam | 268 | 320 | 53 | 5.7E-15 | ||
| ProSitePatterns | 310 | 320 | 11 | - | ||
| PRINTS | 319 | 340 | 22 | 2.4E-27 | ||
| ProSiteProfiles | 324 | 371 | 48 | 10.605 | ||
| Pfam | 325 | 362 | 38 | 1.9E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0322900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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