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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0326200 |
| Transcript ID | LotjaGi1g1v0326200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 2; TAIR: AT1G80500.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2; TrEMBL-Plants: tr|I3SKY8|I3SKY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0326200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77955895..77957857) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACCACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATATATGAAGCTGAAGTTGGAGTAGCTGCTAA AGTATGATTCTTCTCAATGTTATTTTGTTTACCTCTCTAAACTTCAAGGTTTAATTGATTTATCATTTTTGTTTTAATTT TTAACTTGTGGCGAGGCGAGCTAGATATTTGGTTTTTCTTACTATTGAGTTGGATTGACCACTCTGCATCACTGTAGGTT ATGCAATTTTAGAGGCAAATTGATGCCTGACAAATGTTTAAGGGGGATTCAATTTACATTATAATTTTTTCATCTGATTC ATGTAAATGTTTTCTTTTGTATCTCTTGCATCGCCTTGTTTTGTATGGTTATGGAAGCAAGGAATTCTTGTTTTATCCCC CAAATTTACGCGATTTTGCAATTTCTTGCTGCATTGTGACAGAGGGAGGATGCTGCTCAGCTGCATCAGTTTATCCTGCA TGCTGCTCTTGATGTTGTTCAGGACCTTGCATGGACTACCAGTGCCATGTGAGTTACATTTTCGGTTGATACATAATCCA CGTTCAAATATAAAACCCTGTCCTCATTATCCTCTTTTTGTGCTTGTGGTTGTATTTATTTTGTTCTTCTTCTCAGCATC TTATTCCTTCGCACTCTCTATGCAGGTACTTGAAATCGGTAGATAGGTTCAATGAGCTCGTGGTATCAGTATATGTCACT GCTGGTCATATCCTTTACATGTGGGAATCATTTTATAATTGAGACGAAAAATTATATTGCTTTTCTTGTGTTGTTCACAC ACAAACAGACACACTCATATGTATTGCTTTATTCTTGTTTTGTTCAAATAAATGAAGTACTGAGACCCCGACTTTTAAGG AGTGTTTGATTCAATTTGCTTACTTAGTTCTATGATTGAGCCATTCTCCTTGCCCTTCCCTTAATACCCTTGCCAGTCAC TGGTAAGGGAACAAAATGAAAGAGTCACTAATGGAGAATTCTTTAACCATACGTCCACACATCTCTTTATGCGTTTTAGT TTTTTTTTTTGTGATATCTTCCTTGACTCATCATACATACCCGGTTTATGTTGCTTCATGACTCTCGTAATGATGATGGT ATTAAGAGCTTCTTCCAAGATGTGCATGAGCTTTACATAAAGGTAATCTGTTTTTTCTTGCCCTCTAGAACATTTTTCAA ATGTAGCCCTTTATTACTTTTGTTGTTAATTTCAAATGTAGCCTTTTCTTATTCTACTAAAGAATATTTCTCTTCAAATG GGATTGTGATAAAGTTCATTTTACCGGTTCTTAAAGCATGCTTTACTGTCTTCATTATCAATTACTGTTGGAATTTTTTT TATCTGGTTTTATCATTACTAAATAACCATGTTCTACATTCCCCCCCTAAGTTTGCTGAATTCCATTCTTACCTGTTTTG GTCCTTTTGGATGTTGAATTAGACATATTCTTCATTTGCCCCCCTTGTTAGCATTTCAATATGTCACCGTAGCATGCATG CTGAATTGTCTGGTACATTATTTTGAACTCAAATGATGAAAATTGCACTCTAATTTGTTGTACAAGATTCTTCCTCCAGG AATAGGCAGAATGCAAGATGCAAAATAAGTTTCCAATGACCATCGTCTTAGTTGGGGTTTCAGCTACTTTTTATTTTCTT TTTCCTGTGCTAGGATATGATTGGCAACACTCCTATCAGTTATAGAAGTTTAAGTTACTAATTGTCTACTTGATTTGGTT GTGATGATAAATATGTAGATACTTGAGCTAATTCTTTGCAAACATACTCTATTACATGGATTGTGAAATAAGTAACTTTA TTTCTGTGTTTTTTTTTTGGGAAATTGCAGACTCTTCTTAATCCCCTGTACTTGCCTGGCTCCCGGATCACATCATCACA TTTTGACACAAAAGTCCGTGCCCTTGCTCGCAAGTATTTTTAG
CDS sequence (LotjaGi1g1v0326200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATATATGAAGCTGAAGTTGGAGTAGCTGCTAA AAGGGAGGATGCTGCTCAGCTGCATCAGTTTATCCTGCATGCTGCTCTTGATGTTGTTCAGGACCTTGCATGGACTACCA GTGCCATGTACTTGAAATCGGTAGATAGGTTCAATGAGCTCGTGGTATCAGTATATGTCACTGCTGGTCATACCCGGTTT ATGTTGCTTCATGACTCTCGTAATGATGATGGTATTAAGAGCTTCTTCCAAGATGTGCATGAGCTTTACATAAAGACTCT TCTTAATCCCCTGTACTTGCCTGGCTCCCGGATCACATCATCACATTTTGACACAAAAGTCCGTGCCCTTGCTCGCAAGT ATTTTTAG
Protein sequence (LotjaGi1g1v0326200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKSVDRFNELVVSVYVTAGHTRF MLLHDSRNDDGIKSFFQDVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 135 | 135 | 9.4E-54 | – | |
| PANTHER | 1 | 134 | 134 | 3.2E-80 | – | |
| PANTHER | 1 | 134 | 134 | 3.2E-80 | ||
| SUPERFAMILY | 1 | 134 | 134 | 1.83E-40 | ||
| CDD | 4 | 135 | 132 | 1.03176E-75 | – | |
| Pfam | 9 | 133 | 125 | 8.1E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi1g1v0326200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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