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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF64356
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 135 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.038s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0120319.1
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 53451188 53451763 +
2 domain predictions
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Lj0g3v0128539.1
n.a. Clathrin adaptor complexes medium subunit family protein isoform 3 [Theobroma cacao] gi|508708681|gb|EOY00578.1| chr0 58065324 58066905 +
2 domain predictions
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Lj0g3v0268169.1
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 138864539 138870184 -
2 domain predictions
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Lj0g3v0268169.2
n.a. PREDICTED: AP-3 complex subunit sigma-like [Cicer arietinum] gi|502153217|ref|XP_004509260.1| chr0 138864539 138870184 -
2 domain predictions
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Lj0g3v0321629.1
n.a. PREDICTED: vesicle-associated membrane protein 725-like [Glycine max] gi|356567876|ref|XP_003552141.1| chr0 167935440 167938913 -
2 domain predictions
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Lj0g3v0346919.1
n.a. PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| chr0 182024252 182026112 +
2 domain predictions
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Lj0g3v0346919.2
n.a. PREDICTED: AP-1 complex subunit sigma-1-like [Cicer arietinum] gi|502134135|ref|XP_004502012.1| chr0 182024252 182031553 +
2 domain predictions
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Lj1g3v1363170.1
n.a. PREDICTED: trafficking protein particle complex subunit 2-like [Cicer arietinum] gi|502137185|ref|XP_004502999.1| chr1 16350263 16352559 +
2 domain predictions
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Lj1g3v1363170.2
n.a. PREDICTED: trafficking protein particle complex subunit 2-like [Cicer arietinum] gi|502137185|ref|XP_004502999.1| chr1 16350263 16352559 +
2 domain predictions
 –
Lj1g3v1486180.1
n.a. PREDICTED: trafficking protein particle complex subunit 2-like [Cicer arietinum] gi|502137185|ref|XP_004502999.1| chr1 17737133 17740432 +
2 domain predictions
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Lj1g3v2128340.1
n.a. PREDICTED: AP-4 complex subunit mu-like [Glycine max] gi|356510108|ref|XP_003523782.1| chr1 25625550 25630061 -
2 domain predictions
 –
Lj1g3v2897290.1
n.a. PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Glycine max] gi|356568553|ref|XP_003552475.1| chr1 32688015 32690999 -
2 domain predictions
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Lj1g3v3478250.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357505361|ref|XP_003622969.1| chr1 40403964 40407058 -
2 domain predictions
 –
Lj1g3v4037140.1
n.a. PREDICTED: trafficking protein particle complex subunit 1-like [Cicer arietinum] gi|502180695|ref|XP_004516696.1| chr1 47701010 47706147 +
2 domain predictions
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Lj1g3v4790740.1
n.a. PREDICTED: AP-3 complex subunit mu-1-like [Cicer arietinum] gi|502113052|ref|XP_004494527.1| chr1 57719058 57721595 -
2 domain predictions
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Lj2g3v1415400.1
n.a. PREDICTED: AP-1 complex subunit mu-1-like [Glycine max] gi|356497456|ref|XP_003517576.1| chr2 22438947 22442672 -
2 domain predictions
 –
Lj2g3v1984990.1
n.a. PREDICTED: AP-2 complex subunit mu-like [Cicer arietinum] gi|502160553|ref|XP_004511783.1| chr2 29263720 29269531 +
2 domain predictions
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Lj2g3v2985930.1
n.a. PREDICTED: AP-1 complex subunit sigma-2-like [Glycine max] gi|356499273|ref|XP_003518466.1| chr2 38530142 38532871 +
2 domain predictions
 –
Lj2g3v3022900.1
n.a. PREDICTED: vesicle-associated membrane protein 711-like [Cicer arietinum] gi|502098408|ref|XP_004491228.1| chr2 39084748 39087773 +
2 domain predictions
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Lj3g3v1789090.1
n.a. PREDICTED: probable VAMP-like protein At1g33475-like [Cicer arietinum] gi|502136366|ref|XP_004502660.1| chr3 22790227 22790862 -
2 domain predictions
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Lj3g3v1953410.1
n.a. PREDICTED: probable VAMP-like protein At1g33475-like [Glycine max] gi|356517810|ref|XP_003527579.1| chr3 25107968 25109748 -
2 domain predictions
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Lj3g3v2210360.1
n.a. PREDICTED: coatomer subunit zeta-1-like [Cicer arietinum] gi|502080765|ref|XP_004486673.1| chr3 27341787 27344952 -
2 domain predictions
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Lj3g3v2576210.1
n.a. PREDICTED: 25.3 kDa vesicle transport protein-like isoform X1 [Cicer arietinum] gi|502156568|ref|XP_004510539.1| chr3 31614385 31619854 +
2 domain predictions
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Lj3g3v2666480.1
n.a. nonclathrin coat protein zeta1-COP [Glycine max] gi|351726924|ref|NP_001236887.1| chr3 32553711 32560255 -
2 domain predictions
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Lj3g3v2990300.1
n.a. PREDICTED: vesicle-associated membrane protein 714-like [Cicer arietinum] gi|502145830|ref|XP_004506198.1| chr3 37014107 37017690 -
2 domain predictions
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Lj3g3v3237910.1
n.a. Trafficking protein particle complex subunit [Medicago truncatula] gi|357521045|ref|XP_003630811.1| chr3 39923887 39927515 +
2 domain predictions
 –
Lj4g3v0070720.1
n.a. nonclathrin coat protein zeta2-COP [Glycine max] gi|351727329|ref|NP_001236901.1| chr4 454112 456103 -
2 domain predictions
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Lj4g3v1881960.1
n.a. PREDICTED: vesicle-associated membrane protein 713-like [Cicer arietinum] gi|502151469|ref|XP_004508456.1| chr4 26763532 26765982 +
2 domain predictions
 –
Lj4g3v1983620.1
n.a. Signal recognition particle receptor subunit alpha [Medicago truncatula] gi|357480047|ref|XP_003610309.1| chr4 27655277 27659613 -
2 domain predictions
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Lj4g3v2336850.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr4 32373309 32373832 +
2 domain predictions
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Lj4g3v3031630.1
n.a. PREDICTED: AP-4 complex subunit sigma-like [Cicer arietinum] gi|502138730|ref|XP_004503510.1| chr4 40583311 40584809 -
2 domain predictions
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Lj5g3v0186710.1
n.a. AP-2 complex subunit sigma-1 [Medicago truncatula] gi|357438415|ref|XP_003589483.1| chr5 1640029 1642503 +
2 domain predictions
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Lj5g3v2237620.1
n.a. PREDICTED: vesicle-associated membrane protein 727-like [Glycine max] gi|356575504|ref|XP_003555880.1| chr5 32098508 32101962 +
2 domain predictions
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Lj5g3v2237630.1
n.a. Coatomer subunit delta-3 [Medicago truncatula] gi|357454817|ref|XP_003597689.1| chr5 32103103 32108569 -
2 domain predictions
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Lj5g3v2237630.2
n.a. Coatomer subunit delta-3 [Medicago truncatula] gi|357454817|ref|XP_003597689.1| chr5 32103949 32108234 -
2 domain predictions
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Lj6g3v0132830.1
n.a. vesicle-associated membrane protein 7B [Arabidopsis lyrata subsp]. lyrata] gi|297843284|ref|XP_002889523.1| chr6 1472697 1475069 -
2 domain predictions
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Lj6g3v0315170.1
n.a. Trafficking protein particle complex subunit [Medicago truncatula] gi|357521045|ref|XP_003630811.1| chr6 3124939 3127496 -
2 domain predictions
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Lj6g3v1077660.1
n.a. PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max] gi|356517002|ref|XP_003527179.1| chr6 12587209 12590890 +
2 domain predictions
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Lj6g3v1078510.1
n.a. fiber NTGP1-related protein [Gossypium barbadense] gi|35187452|gb|AAQ84317.1| chr6 12903509 12907613 +
2 domain predictions
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Lj6g3v1444530.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr6 16989308 16991458 -
2 domain predictions
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Lj6g3v1618410.1
n.a. PREDICTED: AP-4 complex subunit mu-1-like isoform 1 [Glycine max] gi|356552963|ref|XP_003544829.1| chr6 18276128 18284966 -
2 domain predictions
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Lj6g3v1692680.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357448351|ref|XP_003594451.1| chr6 18919415 18923325 -
2 domain predictions
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LotjaGi1g1v0003000.1
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 LjG1.1_chr1 695813 697930 +
2 domain predictions
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LotjaGi1g1v0003000.2
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3T1A3|I3T1A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0003000 LjG1.1_chr1 696342 697502 +
2 domain predictions
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LotjaGi1g1v0050900.1
n.a. Vesicle-associated membrane protein; TAIR: AT5G11150.1 vesicle-associated membrane protein 713; Swiss-Prot: sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713; TrEMBL-Plants: tr|I3S1N5|I3S1N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050900 LjG1.1_chr1 7249054 7252617 -
2 domain predictions
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LotjaGi1g1v0050900.2
n.a. Vesicle-associated membrane protein; TAIR: AT4G32150.1 vesicle-associated membrane protein 711; Swiss-Prot: sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711; TrEMBL-Plants: tr|I3S1N5|I3S1N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050900 LjG1.1_chr1 7251399 7252404 -
2 domain predictions
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LotjaGi1g1v0056300.1
n.a. AP-1 complex subunit sigma-1; TAIR: AT2G17380.1 associated protein 19; Swiss-Prot: sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1; TrEMBL-Plants: tr|I3S6L2|I3S6L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0056300 LjG1.1_chr1 7895666 7899849 -
2 domain predictions
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LotjaGi1g1v0137900.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|V7B6Q9|V7B6Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0137900 LjG1.1_chr1 22509403 22517521 +
2 domain predictions
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LotjaGi1g1v0287200.1
n.a. Vesicle-associated membrane family protein; TAIR: AT4G27840.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q9STP2|PHL21_ARATH Phytolongin Phyl2.1; TrEMBL-Plants: tr|G7J7F0|G7J7F0_MEDTR VAMP-like protein, putative; Found in the gene: LotjaGi1g1v0287200 LjG1.1_chr1 69745641 69748401 +
2 domain predictions
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LotjaGi1g1v0326200.1
n.a. Trafficking protein particle complex subunit 2; TAIR: AT1G80500.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2; TrEMBL-Plants: tr|I3SKY8|I3SKY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0326200 LjG1.1_chr1 77955548 77958247 -
2 domain predictions
 –