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LotjaGi1g1v0334300.1

Overview

Field Value
Gene ID LotjaGi1g1v0334300
Transcript ID LotjaGi1g1v0334300.1
Lotus japonicus genome version Gifu v1.2
Description Multifunctional CCA protein; TAIR: AT3G48830.1 tRNA nucleotidyltransferase/polyA polymerase family protein; Swiss-Prot: sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase I; TrEMBL-Plants: tr|K7KL92|K7KL92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:79288546..79294427) extracted from Lotus japonicus Gifu genome v1.2.

CAATGAAACAATGTGAAGAAATTGAGCTTGTTCTTGAGGCTTAAACCCTAAATGTAGATTGTAGAGCTTCTTCTATGGTG CATTCCAATGGCGGTTGCAAGCTTAAAATTCGCGCGCCAACCCAATCTTCATCTTCTTTCCACTCCCTTCCAATGTCTCC GCATGGTATGTACACGCTTCTCATCATCTCATTCATTCGCATTCTTTCACAGCGTTTTGCACTATCTTACTTGCTTGATT TTGCACTTTCTTCAAGGTTGTACCGAAATCCGTCGTTGCATTTGACGCAGATGCCGCCACGACAACCGAAAAGTGTAGCG GCTCCATTCCTGAAGAAGGCAAGTGGAGTGAAGTAAAGTGAAGGACTCATCTCAATTGTTAATTTGTAGTGAAAGCTGGA TTTTTTTTTCTTTTTTTTTTTTTGAAATTTTGAATTGGAGTTTTGTATTGTGTAACTCTGAATTTGTTTTTGTTGTTGTT GAATTGATGAAGTTGACAAGAAGGGCCCGGAATGGAAGAGGGTTGATTCAAAAGAGCTTGGAATTCATAATTCGATGATT GGAGGAACTGTGAAAAAGGTTCTTAATGGGCTCAAGAAAAAAGGTGAACATTGTGGGAAATGAAAGGAATTGCATTTCCA TAATTTTTGTGTTCACCATTAAGTAAAATGTGGTTGGTTGATTGCTTGGCACTACTATAAGATTTATGCTTTGTTGACAA ATATCGGTGCAGTGAAAGTTTGTTTGGATTAATCAATTTTCTGAACTTATATTCTTACCCTTGAATGACTTTATCATGCA CCAGAAGTGAATTGATTAATCTGCTGCAAAGTAGTTATGCTGCAATAGTTATTTTAGTGTAAGTGTGTAACCATTTCCCC TCATCAACACCGTAGCAACAAGGTTCCTTGTCATTTGTCACTCTGAAAATGGTGCCTCTCAGATATAATTCGGACCTTGC ACATAATTTGTGGAGTTGTTGGATATTTGAAGATAATTGTAACTTGTAGCCATCTGTTTCTTAAATTTCATCAATGCAAA CCAATTTTTTACCTAATTATGGCCCTGGAAAAAGTTGTTCTTTTACGCTGTGGTATAGTCTTCGGGTTTGTATGTTCATA GCTTAAGCATAAGATTTCATGATTTATCTTCATTTGTGTAGTAGTTTTTTAGATGCTTTCCTTGATTGTAGTGAGATGGG TACAAGTATATTTGATTCAGCATGGATTCTATTGTTTGCATTGCTATTAATCATGCCTTTATATATTTCTTTTTTGACTA ATTATGTATGCATTGCTTTTTTTGGGCAGTTCTATGGGACTATGTTAAAAACTACTCCACCCATGAACCATGTTTTTACA ACTAACATTCAGTAAATGTTATTTACAATATGCTCCTTATGTGCTAGCAGAGAAGCCCTTTTAACGTGCGAACCATGTTT TTCCACGGTAGAAAAAGTCTACTTTTTTATTGTTAATTATGTTTTGCAGCTTTTGCTTAAGGCCTATTCTCCTATCTTGT GGACGTCTTCCTTTTGAAATGTTCATAAATTGTTTTTCTCCTCCTTGTAGGATACGATGTGTATCTTGTAGGAGGTTGTG TACGGGATCTTATTCTAAAGGAAACACCGAAGGACTTCAATGTTATAACTTCAGCTGAGCTCAAGCAGGTTACTTGCCTC TATTTTATAAATTCATTTTATTGAATTATTTATAAGTCTACTGGATAGCTCTATAGATCAAGCATTATGTTAATTAAACA GCACTTTCAAGTTACAAGGGCAATGAATGTGTTTATATTGGCATTTGGCTTTGCATGGAAGTTTAATTTATGCAATCTCA ATTTCAAACTTGAACTTATATTTTGGGCTTGATATCTCTGGAACTGATGATTGCGTGATGGATACTGACTCAATTTGCAG GTCATGAGAATATTTTCATGGTGTGAGATTACTGGTAAACGTTCCCCTACATGTCACATTCACATGGATGGTACCGTTGT TGAGGTTGGTATATTTTGGTTAACTAAGGGTTTTAGCTTTGGTCTGAACTTTATTTAGTGAAAGTGTGGAATGCTTGCTT GAATTTTTTTTTTTCTATATTATTCTGTTTATGATGATAATTTTATATCCCTTCCGATTAGGTTTCAAGTTTTAACACTG CTAGATGCGAAGTAGGTATGGAATTCGATCATCATATTGAAGCACTTAATGGCTGTGACGAGAAGGATCATCAACGATGG ATGAATTGTATAAACCAGGACTTTACAATTAATGGGTTGTGCTCCTGTCCTTGCAACTTAAAACACTGAAATTCATTCAT TAGTTTTTTTTCTTGGAGGGAGGTGCATGAAGCTGCAGTTGTCTCTCTGCACAGTTTTAAAATTCAGTTAATTTACATTG TACAGCTTTGTTAACCAACTTCACGCTATTGCAGATTGATGCTTGATCCCTATGCAAGAATTGTTTATGATTACACGGGA GGAATAGAAGATATTCAAAAAGCTAAAGTGTGCATGTATCTCTTAACAACAGTGATTTCTTAAATTACTTTTCCTGCAGT GGTTATAGGTTTTGTTACTGAACTTTCTGTATGAACAGGTGCGAACTATAATTCCGGGCGATACTTCATTTCAGGAAGAT TATGGTGAGTTTCCATAGATCAATTACTTCATCATGCTATCTTATACTTTGTGCTTTGGACCTCTCACCTACTCTTTGGA TTTCCAAAATCTGTCTGACTCCATTTTTCTCTGCAGCTCGCATTCTACGCGCAATTAGAATTGCTGCTCACTTAGGATTC AGTGTTTCTAAGGAAACTGCTCATTTTATCAAAAGTCTATCTTCTTCAGTCTTAAGACTTGATAAGGTACTGAAAGTGTT CTCCTCTCTGCTTTATTATGTGCATACAAATGTCCTCTCTTGATTATTTAACTTCTTTATTGCTTCAGGATAGGCTCCTG ATGGAAATAAATTATATGCTAGCTTACGGTTTTGGTGAAGCTTCTTTGAGGCTATTATGGAAATTTGGACTTCTCGATAT ACTTCTTCCCTTTCAGGTAAATGTTGATTTTGCATTTAATTTCTGAATCTCAATCATTAAGTGTAAGTATTATTTAGGTT CAACATTACAGGCTGCTTATTTTGCTCACCATGGATTTCAAAGGCTGGATAAAAGGACCAATATGCTTCTAGTAAGTTGT AATTTCATCCTTCTTCGAAGAGTTAGACTTTAGAGTTTGTTGGATTACATATTGACTTACCAGCATTGGTTTAGGCAGAA TATCATACAAGAGATCAAGCTTACTTATGTCAAATATAGTATCATATTAGTACCATATTGACATATTTTTTATTGGATCT TTGGAATTTGATTACAGTCTTTGTTCTCCAATTTGGATAAGCTTTTGGCTCCAAATCTTCCATGTCATAGTAGCTTATGG TAAGTTCTTTGCAAGAAAAATCCCTTATCTTCCTTGTTTTACTTCCTTAGCATTATGCAATTAACATGTTTCACTTATTT CTCCCTTCCTGTGTTACATAGGAAATGTCTCACTTATTTCCTGATATATTTATGATCAATTAAAACCCATAGTTTACTTC AGTTTTCTTCTTTTATGGAGCAGTTAAAATTACACAATGATCCTTTTGTTATTAGTTTGTTCCATAGTTTCCCTGTCCAT CTTTTATTGCCATGGAATCCTATACAGTAGATTTGCATTATCTATGGCCAATCTTTTCTTTTTCTCACTTCATCTAGAAC TAGAACCTTGGATAGGATTGGGGTGGGCGATGGGAATAAGGGGAGTGGGACCTCGTTATATGTCATAAATGAGATAGAAC TGATACAAGGTCTGTGGCTATTTAGGCAAAATTAAGTGCACCAGTGTCCAGAAAACATCAATATCATTTCTAAATTTTTA AAATTTTCTTTGCAACAAAGTTTTGGTTCTTAGTAAATAAGAATTGAAGAGATTTTGTAGCTTTAGTTTATCTTAACTGT TTGGTCACTTTCACTATCCAAGTATGATTGAAGTTTTCTTCTCCCAACTCTCTATTCTAAGCATTGTTTTTCTTCTATTG AAATTATTATTGCAAGTCTAAGGGGAATTGGATATAGTTTACGTTATCGTCAATTATACATGGTTAGAGTTTGAACGCAG AGATATTAACAAGCTGATTACAAGTCGTGTCAACAAAGAGAAGTTAATCAGACATCTATATTTTTTCAGGGTTGGCATCC TTGCATTACATAAAACATTGAGTGATCGACCAAGGGACCCCTTGGTGGTTGCTTCATTTAGCCTTGCAGTACATAATGGT GGAAATCTGTTGGAAGCAGTGAACATAGCAAGGATGATCAGCAACCCACATTATGTGAGATTTCCTGAATTATTAGACCC TTCAGGTCTGGATGCAAAGGCACTGGAAGATGAGACTCTGGAGCTTGCAGAGTCTATTCAAGGGACACTATTGCAAATGA CTGATCAGTATTTTGTATCTAAGGCTTTGGCTGACTATCCCCAAGCCCCTCATTCTGATCTGGTGAGCTTATTTTCCCTT GATTTATATGTGTATTTTAGGACAATGTTATTGTGTAGATGGACTGCACAAAGAAGTGTCATATAAATGAATTGTTCTCC ATCTCATCAAGTGCAAACTAACATTTTCGATTCCCCCCAATAATAGCCCTCGCTTTCATATGCAAAACATGCTAAGACAT AGAGGGAAAAATGTTTGCAGCAGTTGAATTTCGTGTAATTTATTTCATATTCCATGCATACAAGGAAGATTCATAGCTAG TTTGTATCTTTTATTAGATGTGCCATATACTTAAACCATTCCAAACCCTGAGTGCCATAGTGGGGTTTTTCTTTCCTAAA TAGGCTGATAAGTGAACACCTGAAAACTGAAACATAGAAGATGAGTGTGTATTTCCAACAAGTTCATGTAATTTTGGGTT GTAGTTATTTGGAATGTCAACTTTCTATTATTTTTGGATTACTTGTCATAATGTTAGTAGGCAGTTCAAATTGCCAATAA ATATACCAAGTAATGTTTTTGTAATTTTTGTTCAGGAATCCAGGTCTTCTATGCTGTATGTTAATATTGACTGTGATTTA TTGGTGGAGATTCTTGCATCTGTAGTATTATACTATACCGTCATGATTTTGCTCTAAAATTACTATACATTCAATTTCTT ACCACTTGTTTTGATTGTGTAATAACAGATAGTATGCAAGAATTTTTGTGCCACATCTTAATCTTTATGTCTATTTTGCA GGTAATCATTCCATTAGGACTATACCGAAAAACATTCAGCATTTTCGGATGTGTGAAAAGGAGTGCTGATAAGAAATTTT TGTCAAAGCAAGACAGAAATATTGATTACGAGTCTTTGGCACATGGTAACCTACAAGAAACACGACATGTTTTTGCAAGG ATTGTATTTGATACCATATACCCACTTCACCAGGATCAAACTTCCCTTATTAGAGAAAAATGCTCTCTAAAATAGACATT CTATCAAGAGAAATTAGTCTGGTGAGAATTGGAATAGCTTGGTGAAAGGTCTTCTAGCTCTATGAGGTACTTGCAGGAAT TAAAATTCTCTTCAATTTTTGACATCAACACTGGTTAATAAAGGGTAGCAGTGTACTATCCTACCTTCATCTGCAATGTG TACCTAACAAGCTGCTACATATCTAGTGGATATGATTTTGCTCAAAAAGCCAATTCAGATAACCAACTTGCATCCAACGA GGACTCCACAAATCATCATTTTGCTCATTCAAACATCTGATTTCATTCACTTTATTTCTGAATGATGTAAATTATTAATT TCATATTAAAAGTTTTTATTTTATTAAAAAGAGTAAAATACA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0334300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGTTGCAAGCTTAAAATTCGCGCGCCAACCCAATCTTCATCTTCTTTCCACTCCCTTCCAATGTCTCCGCATGGT TGTACCGAAATCCGTCGTTGCATTTGACGCAGATGCCGCCACGACAACCGAAAAGTGTAGCGGCTCCATTCCTGAAGAAG TTGACAAGAAGGGCCCGGAATGGAAGAGGGTTGATTCAAAAGAGCTTGGAATTCATAATTCGATGATTGGAGGAACTGTG AAAAAGGTTCTTAATGGGCTCAAGAAAAAAGGATACGATGTGTATCTTGTAGGAGGTTGTGTACGGGATCTTATTCTAAA GGAAACACCGAAGGACTTCAATGTTATAACTTCAGCTGAGCTCAAGCAGGTCATGAGAATATTTTCATGGTGTGAGATTA CTGGTAAACGTTCCCCTACATGTCACATTCACATGGATGGTACCGTTGTTGAGGTTTCAAGTTTTAACACTGCTAGATGC GAAGTAGGTATGGAATTCGATCATCATATTGAAGCACTTAATGGCTGTGACGAGAAGGATCATCAACGATGGATGAATTG TATAAACCAGGACTTTACAATTAATGGATTGATGCTTGATCCCTATGCAAGAATTGTTTATGATTACACGGGAGGAATAG AAGATATTCAAAAAGCTAAAGTGCGAACTATAATTCCGGGCGATACTTCATTTCAGGAAGATTATGCTCGCATTCTACGC GCAATTAGAATTGCTGCTCACTTAGGATTCAGTGTTTCTAAGGAAACTGCTCATTTTATCAAAAGTCTATCTTCTTCAGT CTTAAGACTTGATAAGGATAGGCTCCTGATGGAAATAAATTATATGCTAGCTTACGGTTTTGGTGAAGCTTCTTTGAGGC TATTATGGAAATTTGGACTTCTCGATATACTTCTTCCCTTTCAGGCTGCTTATTTTGCTCACCATGGATTTCAAAGGCTG GATAAAAGGACCAATATGCTTCTATCTTTGTTCTCCAATTTGGATAAGCTTTTGGCTCCAAATCTTCCATGTCATAGTAG CTTATGGGTTGGCATCCTTGCATTACATAAAACATTGAGTGATCGACCAAGGGACCCCTTGGTGGTTGCTTCATTTAGCC TTGCAGTACATAATGGTGGAAATCTGTTGGAAGCAGTGAACATAGCAAGGATGATCAGCAACCCACATTATGTGAGATTT CCTGAATTATTAGACCCTTCAGGTCTGGATGCAAAGGCACTGGAAGATGAGACTCTGGAGCTTGCAGAGTCTATTCAAGG GACACTATTGCAAATGACTGATCAGTATTTTGTATCTAAGGCTTTGGCTGACTATCCCCAAGCCCCTCATTCTGATCTGG TAATCATTCCATTAGGACTATACCGAAAAACATTCAGCATTTTCGGATGTGTGAAAAGGAGTGCTGATAAGAAATTTTTG TCAAAGCAAGACAGAAATATTGATTACGAGTCTTTGGCACATGGTAACCTACAAGAAACACGACATGTTTTTGCAAGGAT TGTATTTGATACCATATACCCACTTCACCAGGATCAAACTTCCCTTATTAGAGAAAAATGCTCTCTAAAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0334300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVASLKFARQPNLHLLSTPFQCLRMVVPKSVVAFDADAATTTEKCSGSIPEEVDKKGPEWKRVDSKELGIHNSMIGGTV KKVLNGLKKKGYDVYLVGGCVRDLILKETPKDFNVITSAELKQVMRIFSWCEITGKRSPTCHIHMDGTVVEVSSFNTARC EVGMEFDHHIEALNGCDEKDHQRWMNCINQDFTINGLMLDPYARIVYDYTGGIEDIQKAKVRTIIPGDTSFQEDYARILR AIRIAAHLGFSVSKETAHFIKSLSSSVLRLDKDRLLMEINYMLAYGFGEASLRLLWKFGLLDILLPFQAAYFAHHGFQRL DKRTNMLLSLFSNLDKLLAPNLPCHSSLWVGILALHKTLSDRPRDPLVVASFSLAVHNGGNLLEAVNIARMISNPHYVRF PELLDPSGLDAKALEDETLELAESIQGTLLQMTDQYFVSKALADYPQAPHSDLVIIPLGLYRKTFSIFGCVKRSADKKFL SKQDRNIDYESLAHGNLQETRHVFARIVFDTIYPLHQDQTSLIREKCSLK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43051
10 519 510 1.1E-259 –
PANTHER
PTHR43051:SF6
10 519 510 1.1E-259 –
Gene3D
G3DSA:3.30.460.10
62 219 158 1.9E-37
IPR043519
SUPERFAMILY
SSF81301
69 218 150 2.51E-25
IPR043519
CDD
cd05398
79 218 140 1.2444E-27
IPR002646
Pfam
PF01743
94 222 129 7.1E-19
IPR002646
Gene3D
G3DSA:1.10.3090.10
221 377 157 2.3E-30 –
SUPERFAMILY
SSF81891
221 359 139 1.22E-27 –
Pfam
PF12627
249 310 62 1.2E-13
IPR032828

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0016779
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0334300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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