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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0335900 |
| Transcript ID | LotjaGi1g1v0335900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 2; TAIR: AT1G80500.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2; TrEMBL-Plants: tr|A0A0L9UER7|A0A0L9UER7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0335900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79543023..79546781) extracted from Lotus japonicus Gifu genome v1.2.
CACATATTTTTATTTGTATCTCTCTCCTTTTATCATCTATCACATCTTATACTTTCTCACTCTTACTTTTTCTTTTCTTT CTATCTCTCTCTTCCTCCACCTCATTCCACCTCATTTTGAGGTGTGAATAAATAATTATTGCAATCCAAACACACCCTAA TAGTGAAATAACTTTGCCCCTAATCGTGTCACTGTCCAGCGAGTCTGCCATCTCAAGTCAAGCTGTTCTCATCTCAACTT CGTCTTCTCCTTCCTGCGACACGACACTTTCCAACAGCCACCGAGGTAATTTCGCCGTTTCATCTTCGTCTACTCTTCGC CGTTCCATTCTGATTGTGTCTCTATGTGCTATTGTAGCCTCTAGTAGATTTATTGGCAGTGTCAACTTTTGATATAGAAA TTGGGCTTGTTTAAATTTTGTTGACTTTCCTTGCTTGACGAAGAGGTGATCATACGTTGACTCTTGGTTTCACATTTAAC ATGTTGAATTGATTAGGACATGTTCCACAAGTTGCTGCATAAAGACCCCAAAGCTGGTCAGCCTATGGTTGATATTCTAT TGACCAGTGTTGTTAATGGCCGATGGTGGACTATGGTGGTAAACCAAAGACCTGCCATATTTGACAAATAATGATGGCAG ATGGCGGACTATAGCGTGTTAGATGTCAAACAGTCAATTACCTCAAAAACTTAAACTATTGGGTAAGAGCCACATGAATG TTTTTATATTATATTTCTAACATAGCGGATTACGGAAAAGCCAAAAACCCGCCATGGTGGATATTTGATAACACTTCTAG AGAGCAGAGCTCAATAAATAGCGCAGATATTCTAGGTAAAAATAGTCTTCAAGAAGATTCAAGGAATTCCTATTACAGAG TGAAGTAAGTTGAATGTAGTTTCAGAAGGTTGCAGTTTGAGAAGATTCATTTTCCCATCCATACTTGATAAATCTAAATA ATCATGTGGTAGTTATATGTTTCAATGTTTATCATCTGAAATTTTAAACTGTATTGTAATGCCTGTTAGCCCCCCATTTT AGTTGCAAGAATTCTTTGAGTGGCTGAATTCAATCACCTGAAATAATAAAGCATCATATATGTGAGGAGTTTATGCCTAC GTTAAACCATCTTCGTGTTCTTTGATTCCTGTTTGTGTTTGTGGATTCAAACTCATCGGTGACCTTGCATGCTAGATCCA ATTATTCATATTTTTGGAAAACCAGTGGTTCACTTTAATCAACTATTCACCACAAGATCGCTGTTCCTCCACAGGTTCCC TTCATTAACTTGTGAAATCAAAGGATATTTGCAGTATTGGGCAACACTATTTGATTTCTCGTCCCTTCATCGCATTCAAC TTTCATTAGAGGGTTCGATTCGTGTTATATGTTTTATTTGAGTTTAAATCCCCTGTAAATCCTCATTATTCTCTGTGATT TTGATTGTAGTAATGCACATACTTCTGTTTTCTTTTGTGTTTTGCAGGCGCAGTTCTTGCAGGGTCCCGATAATGGCAAC CACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATACATGAAGCTGAAGTTGAAGTAGCTGCTAAAGTATGAT TCTTTTCTATGTTATTTTGTTTAGTTCTTTAAAGTTCAAGGTTATTGATTTATGGATATTTTTTAGAATTTCAACTTGCT TCGTGCTAGATATTGGTTTTTCTGACTATTGAGATCGATTGACCACTCATGCATCAATGTAGGTTGTGTGATTTTTGGCT AATTGATGTCTGACAAATGTTATGGGGAATTCGATACATATTATAATTTGTGCACCTAATTCATGTAAATGCTCATTTGA ATCTCTTGCATTGCCTTGTTTTGTGTGGTTATGGAAACAAGGAATTCTTGTTTTACCCGTCAAATTTACATCATTTTGCA ATTTCCTGCTGCCCTGTGACAGAGGGAGGATGCTTCTCAGCTGCACCAATTTATCTTGCATGCTGCTCTTGATGTTGTTC AGGACCTTGCATGGACTGCTAGTTCTATGTGAGTTTCATTTTAGCTTGATACATATTCCAAGTTCAAAATTCAATATAAA ACTCTGGCCTCATTATCATATTTTTGTGCTTTTTGTATTTGTTTTGTTCTTTTTCTCAGCATCTTATTCCTTAACACTCT CTATGCAGGTACTTGAAATCGGTAGATAGGTTCCATGAACTCATGGTGTCAGTATATGTCACTGCTGGTATTGAGTCCCC AACTTTAAGGAGCATTTGATTCAATTTGCTCATTTGATTGTATGATTATACCATTCTCCTTGCCCTTCCCTTAACACCCT TGCCATTCACTGGTAGGGGAACAAAATGAAAGAGTCAATTATGGAGAATTCTTTAACCATACAACCCATATATTTCTTTA CGTGTTTTAGTTTTTTTGTGATATCTTCCTTGACTTATCATACATACCGGATTTATGTTGCTTCATGACTTTCATAATGA TGATGTATTAAGAGTTTCTTTCAAGATGAGCATGAGCCTTACATAAAGGTAATTTGTGTTTTCTCGCACTCTAGAACATG TTTCAAATCTAGCCTTTTCTTACTTTATTTGTTAATTGCAAATGTAGTCTTTTCTTATTCTACAATAGAATGCTTCTCTT GAAATGGGATTGTTGTAAAGTTCATCTTTACCAGTTCTTAAAGCATGCTTTACTGACTGCATTATGAATTACTGTTGGAA TTTTTTTATCTGGTTCTATCTTTGTTATATAACCATGTTCTACGTTTCCCTCCTTAATTTGCTGAATTCCATTCTTAACT TTTTGGATGATGAATTTGCCATATTCTACTTTTCAATATTTCAGTTGCATGAATGCTTAACTATCTGGTACATTATTTTC AACTCAAATGATGAAAAAAGCGTTTTAAATTGTGAATAGAAGTTTCGCGGAGTCCATTCTATTTTTTTTATTTTTCCTGT GCTAGAATATGATTGGCAACACTCCTATCAGTTATAGAAGTTGACATAAGTAATTTTATTTGCATGGTTTTTGGGAATTT GCGGACTCTTCTTAATCCCCTATACTGGCCTGGCTCCCGGATCATGTCATCACATTTTGACACAAAAGTCTGTGCCCTTG CTCGCAAGTATTTGTAGAAACCACTAGCTCCTGAGAATCAATGGTTAACAAGTTTCGGAAAGCATTTTATTCCTTTCATG ATTTGGCTGTAGGCTTTGCTTTTGTCCATAATGTTGTGTACTCTGGTAATAGCAGAAGGCTGTATTTGCTAATGAAATAG AGGTGATATGCTGGCAAAAAGTTGTTCCATTGGTAGTGACTATTTGTAATAGGGGGGACGATCCTCTCAGTTGAAATTCC GTGATGGTTTCTCATTTGTATCTATCTCTCTTCATATGTATAATGTTTTAAATAAGTGTTAAATAAGTGAAACCATGTGA ATGTTTATTAAGAGAGAGATAGACTCAAACTTTAACATGAGAAAATATGAGGGAAATTCACATGAGAGAATTCTCTCTTT TGTAATACATACTAATCTTATCATTGATGGTCAACCATATGATTTAAGTGGTGGAGATTATTTTTCTTTTCCTTTGTGCT TCAAAATTGTTAAATGTGAACTCTTGCATTAGTCATCTCGATATATTATTATAGTGTCACCTTTCCAAAAGAATTTTTTC TAAACAATTCCTAGAATATCTAAAAGGTTATTCATCTTTGTAATAAATTAAAGTGATAATGTGAAAATAAAAAGTTGGC
CDS sequence (LotjaGi1g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATACATGAAGCTGAAGTTGAAGTAGCTGCTAA AAGGGAGGATGCTTCTCAGCTGCACCAATTTATCTTGCATGCTGCTCTTGATGTTGTTCAGGACCTTGCATGGACTGCTA GTTCTATGTACTTGAAATCGGTAGATAGGTTCCATGAACTCATGGTGTCAGTATATGTCACTGCTGGTATTGAGTCCCCA ACTTTAAGGACTCTTCTTAATCCCCTATACTGGCCTGGCTCCCGGATCATGTCATCACATTTTGACACAAAAGTCTGTGC CCTTGCTCGCAAGTATTTGTAG
Protein sequence (LotjaGi1g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTACFIIVSRNDIPIHEAEVEVAAKREDASQLHQFILHAALDVVQDLAWTASSMYLKSVDRFHELMVSVYVTAGIESP TLRTLLNPLYWPGSRIMSSHFDTKVCALARKYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 78 | 78 | 6.7E-22 | – | |
| PANTHER | 1 | 76 | 76 | 6.7E-50 | – | |
| PANTHER | 1 | 76 | 76 | 6.7E-50 | ||
| SUPERFAMILY | 1 | 113 | 113 | 3.75E-20 | ||
| CDD | 4 | 113 | 110 | 5.12903E-41 | – | |
| Pfam | 9 | 76 | 68 | 5.5E-18 | ||
| Gene3D | 79 | 113 | 35 | 5.2E-5 | – | |
| PANTHER | 82 | 112 | 31 | 6.7E-50 | – | |
| PANTHER | 82 | 112 | 31 | 6.7E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi1g1v0335900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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