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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0354800 |
| Transcript ID | LotjaGi1g1v0354800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G45474.1 photosystem I light harvesting complex protein 5; Swiss-Prot: sp|Q9C639|LHCA5_ARATH Photosystem I chlorophyll a/b-binding protein 5, chloroplastic; TrEMBL-Plants: tr|I3T4S4|I3T4S4_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0354800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82639070..82647165) extracted from Lotus japonicus Gifu genome v1.2.
CTATTATGCATGTGGCTGTGGAAGTAGCAATTTTGAAAGCTGGATTTGTGATCCTCTGATAGAAGCAGAAAGAAGCAATG GCCGCAGCAATAGCAAGAAGCTACTCTTTTCAGCCACGCTCTTTATTCAACAGTAACACCATCTATAATCCTTCACCATA TGGAGGATACTCATGGCTGGGACCTGCTGCTTCGAGAGCAGGAACCACTCCACGTTGTAGGCAAATTTGCGCAGCAATGC AACCGCGACCGACATGGCTCCCAGGACTCGATCCCCCAGCTTATCTTGATGGAACGTGAGCCCTTAGACCTCCCTGCAAA TTTTTACTCTATTCAACTTCTGCTAGTGCTGGTTTCTCTTTCAAATTTTAACATAATGGTAAGCTTTTCAGTCTTGCCGG AGATTACGGGTTCGACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAGGTGGTATGTGCAGGCAGAACTGGTTCATG CTCGCTTTGCAATGCTTGGGGTATTCGGAATTCTAGTAACAGATGTGAGTACATTTCTTTTGACATTTGTATTTAACAAA GATAAAGAAAATTGCTGTAATGTCTTTATATCAAGTTCATAGAATCTATCAAAGATTAAGTTGAGATAGTTTTTTGAGAA ACATCACTATTAGATACAACCAAATGTCATCCTGAACTTCTTAGCAATCTATGCAGCTACTTCGCGTCACAGGGCTTAGT AAGATACCTGTTTGGTTTGAAGCCGGTGCAGTAAAATACGAATTTACCAACACACAGACGCTGATCATTGTTCAACTACT CTTGATGGGGTAGAACTTTGACTGCTAACTTCAGCTTGATGAGTTGGGGCTTATATATTTTCTTAGTTTCATTATCCTTT AGAGGTGTGATTTCATCACTTTTACTTGCACAGGTTTGCCGAAACCAAAAGGTACATGGATTTCATTAGTCCGGGATCTC AAGCTAAAGAGGGGTCCTTCTTTGGATTGGAAGCTTCATTTGAAGGCTTAGAGCCAGGGTATTTCCATTTCCCAACACAC ACACACACAACACACATTTCTTCTTTGGTTTCCAATCTGATTCTATGCATGTTTGGAAATTCGTTTACAATTGATTTTGA AGTCATAATCAATTATAGGAAGAAGCTTATGTGAATAGTTTCTAGATTTCAGAATTGATTATGAGGAAAAAGAAATTGAT TCAAACATGCTATCTGTGTTTTATTTACCTTTTGTACTGAGCTTGACTTATTATGCATTCTCCTCGGCAATGTATAAGGT AAACATTGAGGTATATATAATTGTTTCAACAAACAGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAG ACATTAAAAATGCTCGTGAGTCGAAGCTTAAAGAAATCAAGAACGGTACCATTTTTTTCTCAGTTCTTTATTCTTTGTAA ATAAAGATATAGCACTCCAAAGCTCCTTCCCTTAGTTGTGAATCTTCTGGTTACAGGGCGTCTGGCAATGGTGGCAATTC TTGGCATCTTTGTACAAGCTTCTGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCACCTCTCCAATCCATGGCAT AAAACTGTTATTCAAACCCTTGCAAGTTCTGGTTCTTAGTTTGTGAGGATTGCATGTGATAGTTTTGTGACATGGACTGA TCCATACAACGAAATCACTTTTGTTCCCTCAGCCTCTAGTCCTGGTTAAGGTTTTGTTATAGATCTAAGCATATTGAAGC ATTTGTATTCTAATATATTCCAATGGAATTATGTATATTCTTTGTACACTAAAAAGTTTTGTACTTAAGTTCATAATCCT TCAAAACAAATATATTTATACTGTATGAAAACTGAAATGCTTGCTATGATGTTGACACTTCATCTCTCCAATCTATTCAT TCCCCGATTTCCATATGAAGCTATTCTACTGAAATGTCTTTTTCCTAATCACTTAGAAAAAAATATTATAACACTGTTTG TTCAATAAGTTCATGAAAGCGGATGACTGGATTCTTAAAACGATTCCACAAAAATTTAACATTTGATTTTGAATCATAAA AGAAAATGCAAACAGAACAAGGGGTAAATCTTTCATTGAAAACTCATTTAAACAGCACCAAATGATCCAGAACAGTGAAC CTGCCAGAGTTCAGCTTCAAAAGTTGAATCTCGGCATGGAAGTCACAACTCACAATATTAGCCATGAAAATGAACTTGCA CAGAATAGAGGAGCAGAACTCCTTAACAGCTCAATATTTCACAAATGCTATGGACAAATTATTTAAAAAATCAGTGACCT AGGCCTTTATATGTATACTCCATGCAGCAGAAGATCCACAACAATCTCACCTTTTGACTGGGAGAAGTGAGTTCCTTCCA AGTTTCAATTTAATTTGGTGTTCCAATATGCATACTGTATACACCATGCCATTCAAAACGCTTCAAATCTCAAACTTCGA AAAATTCTTTCATTTGATCAAAACTCAAACAAATCTATACATAAGCCGAGTTTCAATATATCAGAAGCCTATACACAATA TGGAATCATCTTAATTTCTCTTTTCCCACCAACGATGTACTTACTGTTATGTCCTCATAAAGCATTGTGCAGGCGACCAT ATACCATTTAAACCATACATCAGCAATCACCAACATCAACATGTACAGGTTCAGAAAATTTTGGGGACTCCAGTATTTCA TCACTGTGAGATCTCCAGAAGAAGCTTAACAATAAAAAAAAATCAAATCGGGTTTACCCTGACTTGGCTGAATGTGTTTT TCTTCTAGCAAAGAACATCAAAACCCGAGGGAACAATGATCTTTTCTTCTTCTTTCCATGTTTTAATTCTGGGGATGATG ATCCATTTTCATCATTGCCTTCATGTTCATAGGCCTCTGGACTTGACATGTTATGTGCAGGACTAGCTGCACCGTGAGCC CGGTCAAAATAATTTGTTTCCTTAATCCCCTCAAAACTACCCCTAGGGCTTTTATTCTGGTTTAGCACTCCATGGCCAGA TTCACCAGCCTTTCTTCGCTGCTCATTTTCTGCTCTCCACTTTCTTAATTCTTGTTCTACACCTAATTTACCTTCCTTTG CCTTCTCAGCCTTTTCCATGGCTATCTTCAAAGATTCCCTTCTAGCAGCTATCTCTCTATTCACTTCATCCAACTTCTCA AAAGATTTCAATTCAGACTCTTTAGCTATCTCAATTTCGGAATTAGCATCTGCAACCCTCTTATTGGCTCGCTCTTCTGC CTCATGAGCCCGTTTGCTAAGCTCATAGTACTCCTCCAAAGAAAGTGTTACCCCAGTAGATGGGTCAATTTCATTTTTGC TTCTAGTTGATTCACTCTCCTGCAATGCTTTAATTGCTTCTATTGCCAACTTTTCAGAAGCTTTTGCAGCCTCTATCTCC TTTTGAGCTGCATGTAATCTACTTTCCAAGGTACTTACTCCAGCCTTGGCTTGCTCTGCTTCTGCCTTTGCTTTCTGCAG CACTTCACGAGCTTCTTGAGTAAGCAAGTTGACCTGGTTATTTTCTTCAGCTGCTAGTTGAAGCTTTTTGGGAAGCTCAG TCATTTCCACTTTGGCTTCTTTCTCCTTCATCTGAACCAAAGCTATTTCTGATCTAGTCTGGTCCAATTCAGCTTCAAGA GATGCAACTGCAATGGAGGCCATTCCCTCTCTTTGCCTGATTGAGGCAAGAGTTGATTTTCCTTGCTCAAGTTCTGATTT TAATGATGTAGCCGCTACCTTCAAGAAACTAACCTCTGCATTTGCTTTCTCTATGTTAAGCTTTACTTCCTCAAGCTCAT TTCTAGCTGATGCCACTGCTGCTTGGATATCAGTGTGTGTCGTCTTCTCTGGTTCTTCTAGGCCTCCTTTTGAGACTCCT TCTTCATCACCTTCCTGCTTTAACTTTGATTCCATATAAGCAGTTAGTTCAGCTTTCAAATCAAGCAGTAGAGCAGAGGC TGTTTCCAGTTTAGACTTGAGTTCCTTCGCAGACGAAACTTTCTGGTTGAGTCTCTGGAGCTCTTCTTCTTCCTGTTTAA GTTCCTTCTCCCAATTGAGAGAATCTTGATCTCTCGCCATGACTGTTCCTATTCTTTGTTCTTCTGCTTCCAAGTGTGCG GCATGTGCAGTCTCCAATAACTCTTTTGCACCAATTAGTTCAATAGTTAAATCCTCCACTGACTTCTCCACTTCCTTTGA TGCGGCAACAGCCTCTTCAGCTTTCGTAATAGCTACATCTCTATCAGTCACCAAGCAAGCGTATTCCTTACGCAATGCTT CCAGTTCCTCTTTCACAGCTATTAAATCTGAAATTGCTGCTGAATATCTAGCTTTAGCAACTTCAAGTTGTGCTGTGGCT GCAACACTCGATTCATCTGCAATACCCTGCTCCATCTCTTCCACTCTGAGCTTTGCAAGTTCAGAGTCTTGCCTTGCTTG ACGCTCTTCTGTTTGTGCCCTCTCTAGGTTGACTTTTAATTCCTCTATTAATCTCTTGGCGCTATCCAGCTCCTTTAGTA CTTGAACTTTTCCCTGTTCAGCAGCCTCTGCTTGTTTTCTGTACTCTGGGATCTCTTCGTTTGCTTTTTCAAGTTCTTGT TCTACAAGAGTACGTCTCTGTAAGTCCAGGAAAAAAAACTAAGTTAATGACAGTTCCAGCAGACAAACTTGCATATCATG AATAGAAATAATTTATCTTCGTCATGGCAGGAAGCACGCCAAGAAGATTTAATTTTAACATCACAAGGGACATTTATTTA GCAGAAAGTACCTATATCAATTCCCTACTTTGTTAAGTCCAAACTGAATTGGTAAGCAAGGAAATAATAAATAAATAGTT AAATAGTAAATACACACACAATGTATAGGCACTTCAATTGGTTTATAATGGAAGCACAATTATTTCACTTGCAGAATTAC ACATTTCATAGTTTCAAAGTATTACAATTAGTATCAGCAGAGTATCACCTTCACGAAATTTAGCCTGTTTAACAAGTAAC ACTAAAAAGCTGGTCAGAGGATTAGTAATTCTGTCGAAATATGAGGTGACGTGCATACAGACACCAATATCTCAAAATAA CAAAGTTCATATTCTAGTTTCATAAATTTGAACTATAGTACACTCCCTGCACTTTCTCAAAAAGTTGACAGGCAGATATA TTTTATAAAAGAAAGACAAATTTTCATTGTAAGATCTTGCAATAAAATACCATGTTAATAAATTTTACACATACAGCATA TGTAAAGGTACGTTGAAATGCCATGTAAGTACGGTTGAGGGAGTACATAGCAAATAAAAACTGTTTTGTTACAGGCGCAC ATGCCTCATAAGGTATGATTAGCCCTGTAAAGTGACATGGATCGGTAAATAATTTCACATTGTTATTATCAACTTCATAA AAACAGCCACCAAATCAACCATTTAACCTTCAAGTACCCGTAGTTGTTTCTTAACTACCACCGCAACCACTGATAATCAA AACGGTACTGAAGACTACTGCTATTGTCTTTTACTGCCCCAATACAGCATTTCCGTAGCCTATCTTTTGACGGATATTGA ATTATTGATTTAGCTTTCAGAAGCAACCAGAACAATCAAAAAGATTCTTTCCTAGAAAAGCAACAACATGCTTTCCTAAA AAAGCAACAAGGGCAATAGAATTTGAAACTTCAAGCTAGAAGTGTGGAAAGTAAAACGAAAATAACTGTCATACAAAAAG ATGGAGATAAATGCAAGATAGATATACCTCCACAGTCTTGATTCTGTGAGCCTTCCAATCCACAATTCCTCCAAACTTGG AAACAACTTCCTTGACAGAATCAAATGGTGCTGCAGTATCAATAAGGCCTCTATTTGCGTCAACCAGCTTGGGTGCGTCA ATTGTTCCCTCATCTATATTAAGTTCATTGTGATTTTTTTGCAAATCTTTTGTTTCAGAAGAGGAAGCCGAGAGCCTAAT CTCATTATCAGCAGAACTGACATCAGTAACATCATCCTTCATTTCATGATTGTAAGAGACATTTTCTGCAGCAATTGGTA CAGGATCTTCAACCAGAGGTACTTGGTAGCTACTTTCTGTTACATCTACCGTAGTCGAAATTGAAGCTGAGTTAGGTGAC TCAGCTGATTCAGACAACTCATTCACTGGCAAATGAGTGTCAGGCTCCACTTTTCCATTGCTAAGTGGGTTTATTGGAGC TTCAATGGAAAATGGATTATCTGCCAGGTTTACCACTTCAGAATTTTCTTCAGATGGTTCAGCCAGTGGCATCTCTACAG GAAATTTGAAAGAGGGCATAGAGGATAGCTTGTCTTCACCATGTTCAGCCAGTGGTGTCTCTACAGAAATTTTTGAAGAG GACTCAGAGGGTAGCTTGTCTTCAACTTGGTCCGCCTGTGGTATCTCTACAAAAGCAATTGTCGAAGAGGATTCAGACGG AAGCTTGTCTTCAACATGTTCTACCAGTGGTGTCTCTAAAGCAATATTTGAAGTGGATTCAGAGGGTATCTTGTCTTCAA CATGGTCTGCCTGTGGTGTCTCTACAGCAGCAATTGTCGAAGAGGGCTCAGAGGGAACCTTGAATTCAAAATGTTCTGCA AGTGGTGTCTCTAAAGCAATATTTGAAGAGGATTGAGAGGGTATCTTGTCCTCAACATTTTCTGAAAGAAACTTCTCTTC AGCAATTTTTGAAGATGTGTCAGGAGGCAGCTTATCTTCAACATCATCCATTGTAAGGAGCAGTTAAAAATGCTAACAGT GTCCAAACTCTAAAAACAAGCAAAAAAGTAAAATCAGTAAAAAAAGTAAAGCAAAAACAAGATATCTATAAAGCCTATAT AAAGTTCTCAGAAATACAATTACAGTTTGAAATGAAAGTTACCAGATACAAGTATCAAATTCAAGAGGAACTGCTACTAC CATAAACGAATCACAAATTGAGAATTGAATTCTATAGGTACCACTAAATTATTTTTCTTTTTACAATCATCACATCTATT TGGAAGTTAAAAGAAATCATTTCAAAGCATCAACCAATTGCCTGAAAAATGTAAACATGCCGTTTCCTATGTTTTCAGTG CTTGGATGACAAATTGAGATGTCTTTATGGATAATTATAATTTCACAAACAAACTATCCCAAAATTGAATGTGAACAGTA CAAAACAGAGCTTTCTAAAATTAATCCTACTTTGGCAAATATAAGATCTCCTTAAAACAGCTCTTCTATTTCAAGTTCCA ACCCCAATTAACTGAATTTCTAAACTTATCTAAGCACCCACAGTTCTTGATGATTGGGATCAATAAAAACAACAATCATA TTCATATAACACATGAAAGCTCACATCACAGATTTTCTTCCCTCTTCATGCATGTTTATATTGAAATGTAATTTACAGAT ACAGAACCAAAAGAACACCACAATAAAACAGAAAATAGTAATTAACATAATAATCACAGTAAAAAATAAATACTTCATTT CTCTATTTCAAAACCCAGATTAATTTTTTCTCCCCTTCTTTCAAAGAAAAAATGAAACCTATAGCATTAAAGCATGTTCT GTAGCTAACCTTTTGAAGGCAAAGAGTTCAATCGATCGGTTGCCAGAACTAGAAGAACAAATCAGTGAAAAAAGCTCTTC TGGACAAAAAGAAAACAGATGGAATGAAAAGTACAATTGTGGGACTCAGTGTTTCCCTTCTTCACCAAAAATGACAAAGC AAAAGGGAAAAGCATGTTATATGAATCCAACTTCAAGTTATTCATAAATAAATAGTAATCCAAACTTTGATTACAAGCTA TGATGATTTGATTGATGAAGAAATGGAATTGAAGGAAGAAAAGAGAATAAGGAGCAACAAGAAGAAGTAACATACCTATG AATGAAGCAGAAAATTGAGGGTGAAATCAAAATTAGGTTGCTGGAAAAAGAAAAGAAATGGAGAGGTGGGAAAAGATGGA GCTAATGTTAGAATGCAGAAAAACACGGAGAAAGATGTACTCTTTAGTGGACCCTACCTCATCACACAGATTAGATCCAT CTGTCTTCACTCTTCC
CDS sequence (LotjaGi1g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCAGCAATAGCAAGAAGCTACTCTTTTCAGCCACGCTCTTTATTCAACAGTAACACCATCTATAATCCTTCACC ATATGGAGGATACTCATGGCTGGGACCTGCTGCTTCGAGAGCAGGAACCACTCCACGTTGTAGGCAAATTTGCGCAGCAA TGCAACCGCGACCGACATGGCTCCCAGGACTCGATCCCCCAGCTTATCTTGATGGAACTCTTGCCGGAGATTACGGGTTC GACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAGGTGGTATGTGCAGGCAGAACTGGTTCATGCTCGCTTTGCAAT GCTTGGGGTATTCGGAATTCTAGTAACAGATCTACTTCGCGTCACAGGGCTTAGTAAGATACCTGTTTGGTTTGAAGCCG GTGCAGTAAAATACGAATTTACCAACACACAGACGCTGATCATTGTTCAACTACTCTTGATGGGGTTTGCCGAAACCAAA AGGTACATGGATTTCATTAGTCCGGGATCTCAAGCTAAAGAGGGGTCCTTCTTTGGATTGGAAGCTTCATTTGAAGGCTT AGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAATGCTCGTGAGTCGAAGC TTAAAGAAATCAAGAACGGGCGTCTGGCAATGGTGGCAATTCTTGGCATCTTTGTACAAGCTTCTGTGACTCATGTTGGA CCAATTGATAACCTTGTGGAGCACCTCTCCAATCCATGGCATAAAACTGTTATTCAAACCCTTGCAAGTTCTGGTTCTTA G
Protein sequence (LotjaGi1g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAIARSYSFQPRSLFNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGF DPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETK RYMDFISPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVG PIDNLVEHLSNPWHKTVIQTLASSGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 221 | 221 | - | – | |
| PANTHER | 35 | 261 | 227 | 1.2E-129 | – | |
| PANTHER | 35 | 261 | 227 | 1.2E-129 | ||
| SUPERFAMILY | 52 | 263 | 212 | 3.79E-61 | – | |
| Pfam | 66 | 234 | 169 | 2.2E-49 | ||
| Gene3D | 67 | 254 | 188 | 9.0E-66 | ||
| Phobius | 222 | 242 | 21 | - | – | |
| Phobius | 243 | 266 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0354800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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