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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0355000 |
| Transcript ID | LotjaGi1g1v0355000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G04860.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protein At2g04860; TrEMBL-Plants: tr|G7J6D5|G7J6D5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0355000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82658516..82661452) extracted from Lotus japonicus Gifu genome v1.2.
CTCACACATTTTTTTTTATCTCATTTCACTCACATTTTTTTTCCTCATCTCTTTTCTTTTTCTATTATATCTCTCATTTA TCCATCTTCCCATCCTATACACTTTTTATCTCAGCTGTTCTCTTCCTATATCAATCAGTCAATTTTCAGAAAAAACACAT GAAGCACTGGTTATGAAATGAAGTGGGCTTCCAACAGAAACATAGCTGCTTTCAAACCCAATTTGTCCTTGTTTCACTTT CACTCCCTGTTCCAAAATGCAAGGTGTGCACTTGTTACCTTTCGCCAACTTTTACAAGCAAATTATAACCCCAACGATGT TACTTTCTCATTACTCATCAAAGCTTGTCTTTCCTCTTCTTTTGCTTTTGGTTCATCAACCTCTGAGCAAAAAGCAAGCC AGATTCATACCCAGTTGGCGAAACGAGGCGTAAACCAATTCCTTTATGTAAATACTGCTCTCATTGACTTGTACATGAAA CTTGGGTTCACCTCTCATGCACACCAACTGTTTGAAGATATGATTTATAGAGATGTTGTATCATGGAACGTGATGATTTG TGGATATTCACAAAATGGGTATCCTTATGACGCTCTTCAACTCTTTGTACACATGCTAAGACAGAATTTCAGACCTAATC AAACAACCATTGCTAGTTTACTACCTTCTTGTGGTATTCGTGAACTGATTCTTCAAGGTAGGTCCATTCATGGGTTTGCA TTCAAAGCTGGCCTTGGTTGGGATACTCAATTGAATAATGCCCTTATCTCAATATATGCTAAATATGATGATTTGGAAGC AGCCCAAGTCTTATTTGAAGGAATGGATGGGAAGAATGTTGTCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATG GTCTTTCGAATAAGGCTGTGCTTTGCTTCAAAGAGATGCTGAAGGAAGGTTTGCAACCTAGTCAAGTGACTATGATGAAC CTTATTTCGGCAAATGCAGTTCCTACAATTGTCCATTGTTGTATTATCAAATGTGGCTTCATCAATGATGCTTCTGTTGT TACTTCACTGGTTTGTCTATATGCAAAGCAAGGATTCACAGAGATGGCAAAACTGCTTTACAAATATTATCCCACAAAAG ACCTGATTACGTTGACAGCTATGACCTCTAGCTATTCTGAAAAAGGTGACATAGAGTCTGCAGTTGAGTGTTTTATCCGA ACTCTGCGGTTAGACATAAGACCGGATGCAATTGCCTTGATCAGTGTCCTTCATGGAATTGAAGATCCTTCTCATTTTGC TATTGGACGTGCTTTCCATGGTTATGGGCTGAAGTGCGCGCTGTCTACTGATTGTTTAGTTGCAAATGGGCTAATAAGCA TGTACTCAAGATTTGATGAGATAGAAGGCACTTTATTTTTGTTTTCCGAAATGAGTGAAAAACCACTGATTACTTGGAAT TCTGTGATATCTGGCTGTGTGCAGGCTGGAAAATCAAGTAATGCCATGGAGTTATTCTCCAAAATGAACATGTATGGACA AAAACCAGATGCCATTACTATCGCTAGTCTGCTATCTGGGTGTTGCCAGCTCGGGAACCTGCGGACCGGAGAGACACTGC ATGGCTATGTCCTGAGGAACAATGTGAAAATGGAAGAATTTACAGGCACTGCTCTAATAGACATGTACACCAAGTGTGGA AGATTAGATTATGCTGAAAAGGTATTTTACAGCATCAAGGATCCATGCTTGGCGACGTGGAACTCAATCATATCAGGTTA TAGTTTATATGGACATGAACATAGAGCTTTCAAATGTTTTTCTGAACTGCTTGAACAAGGGCTAGAACCGGATAGAATCA CTTTCCTGGGAGTTTTAGCAGCATGCACCCATAGTGGACTTGTCCATTTAGGAATGAAATACTACCGTATCATGACAGAA GAGTGTGGTTTGGTGCCAAGTTTGCAACATTATGCTTGCATAGTTGGTCTCTTGGGTCGAGCTGGCTTGTTCAAGGAAGC AATTGAATTCATTAACAGCATGGAGATTCGGCCTGATTCAGCTGTCTGGGGAGCTTTGTTAAGTGCTTGTTGCATCCAAC AAGAGGTCAAGCTTGGGGAATGCTTGGCAAAAAAATTGTTTTTATTGAATTGCAACAATGGTGGATTTTATGTGTTGATG TCAAATCTTTATGCGATTGTGGGGAGGTGGGATGATGTAGCAAAGGTGAGGGATATGATGAGAGACAGTGGAGGAGATGG ATGTTCTGGTGTTAGTGTTATTGAATTGACATCCATCAAAGACACCGATAACAACTTACGCCCAAATGAAGCCTATTTGA ATTCAAGCACTTGGCAGAATTTGTGTCTATATTGACCTCAGATTTTATTGATCAAAATGGAAGGGGGAACCCAGAAAACA GGAAATGCAAAGCGGGTATCTCCAACCCTATCAAAGAGCAAAGAATCACCAACCTCTTGAGGGGGAGAAACGTGGAGGAG AACTCCAAGGTTGTTCACGACGTCCACAACCATGTTGGTTTCTCTTTAGTCATGTCTTACACGACAATAATCCAACATAG TCATGGACCTCTTGCAAGCAGAGATCAAGTGGCAGTGAGGATGGAAAGACATGTCCCACCCATTCAATAATTCAATACTT TGGAGTCATAGGAGAGAAGGACTCGTTTCACACCCCAATGGATTGTTGCCTAGAGGCCATGAAACGCACCCCAAAGCTCA ACACAAGTAATACTACCCTTGCCAACATTGGCTGAAAAACCAAAGAGCCACGTACCAGTCTGGTCCCTGGCCACACCGCC TCTAGAAATTAAGCTAGGATTTGTAACAACATATTAATTTTCATGATACCGGTAGGGGGGACATATTGACCTCATTATAC AATAACTATCGAATACTTTTCTTGAAAAAGTTGCGTTTGAACTGATGTGTCCATGGG
CDS sequence (LotjaGi1g1v0355000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGGCTTCCAACAGAAACATAGCTGCTTTCAAACCCAATTTGTCCTTGTTTCACTTTCACTCCCTGTTCCAAAA TGCAAGGTGTGCACTTGTTACCTTTCGCCAACTTTTACAAGCAAATTATAACCCCAACGATGTTACTTTCTCATTACTCA TCAAAGCTTGTCTTTCCTCTTCTTTTGCTTTTGGTTCATCAACCTCTGAGCAAAAAGCAAGCCAGATTCATACCCAGTTG GCGAAACGAGGCGTAAACCAATTCCTTTATGTAAATACTGCTCTCATTGACTTGTACATGAAACTTGGGTTCACCTCTCA TGCACACCAACTGTTTGAAGATATGATTTATAGAGATGTTGTATCATGGAACGTGATGATTTGTGGATATTCACAAAATG GGTATCCTTATGACGCTCTTCAACTCTTTGTACACATGCTAAGACAGAATTTCAGACCTAATCAAACAACCATTGCTAGT TTACTACCTTCTTGTGGTATTCGTGAACTGATTCTTCAAGGTAGGTCCATTCATGGGTTTGCATTCAAAGCTGGCCTTGG TTGGGATACTCAATTGAATAATGCCCTTATCTCAATATATGCTAAATATGATGATTTGGAAGCAGCCCAAGTCTTATTTG AAGGAATGGATGGGAAGAATGTTGTCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTCTTTCGAATAAGGCT GTGCTTTGCTTCAAAGAGATGCTGAAGGAAGGTTTGCAACCTAGTCAAGTGACTATGATGAACCTTATTTCGGCAAATGC AGTTCCTACAATTGTCCATTGTTGTATTATCAAATGTGGCTTCATCAATGATGCTTCTGTTGTTACTTCACTGGTTTGTC TATATGCAAAGCAAGGATTCACAGAGATGGCAAAACTGCTTTACAAATATTATCCCACAAAAGACCTGATTACGTTGACA GCTATGACCTCTAGCTATTCTGAAAAAGGTGACATAGAGTCTGCAGTTGAGTGTTTTATCCGAACTCTGCGGTTAGACAT AAGACCGGATGCAATTGCCTTGATCAGTGTCCTTCATGGAATTGAAGATCCTTCTCATTTTGCTATTGGACGTGCTTTCC ATGGTTATGGGCTGAAGTGCGCGCTGTCTACTGATTGTTTAGTTGCAAATGGGCTAATAAGCATGTACTCAAGATTTGAT GAGATAGAAGGCACTTTATTTTTGTTTTCCGAAATGAGTGAAAAACCACTGATTACTTGGAATTCTGTGATATCTGGCTG TGTGCAGGCTGGAAAATCAAGTAATGCCATGGAGTTATTCTCCAAAATGAACATGTATGGACAAAAACCAGATGCCATTA CTATCGCTAGTCTGCTATCTGGGTGTTGCCAGCTCGGGAACCTGCGGACCGGAGAGACACTGCATGGCTATGTCCTGAGG AACAATGTGAAAATGGAAGAATTTACAGGCACTGCTCTAATAGACATGTACACCAAGTGTGGAAGATTAGATTATGCTGA AAAGGTATTTTACAGCATCAAGGATCCATGCTTGGCGACGTGGAACTCAATCATATCAGGTTATAGTTTATATGGACATG AACATAGAGCTTTCAAATGTTTTTCTGAACTGCTTGAACAAGGGCTAGAACCGGATAGAATCACTTTCCTGGGAGTTTTA GCAGCATGCACCCATAGTGGACTTGTCCATTTAGGAATGAAATACTACCGTATCATGACAGAAGAGTGTGGTTTGGTGCC AAGTTTGCAACATTATGCTTGCATAGTTGGTCTCTTGGGTCGAGCTGGCTTGTTCAAGGAAGCAATTGAATTCATTAACA GCATGGAGATTCGGCCTGATTCAGCTGTCTGGGGAGCTTTGTTAAGTGCTTGTTGCATCCAACAAGAGGTCAAGCTTGGG GAATGCTTGGCAAAAAAATTGTTTTTATTGAATTGCAACAATGGTGGATTTTATGTGTTGATGTCAAATCTTTATGCGAT TGTGGGGAGGTGGGATGATGTAGCAAAGGTGAGGGATATGATGAGAGACAGTGGAGGAGATGGATGTTCTGGTGTTAGTG TTATTGAATTGACATCCATCAAAGACACCGATAACAACTTACGCCCAAATGAAGCCTATTTGAATTCAAGCACTTGGCAG AATTTGTGTCTATATTGA
Protein sequence (LotjaGi1g1v0355000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWASNRNIAAFKPNLSLFHFHSLFQNARCALVTFRQLLQANYNPNDVTFSLLIKACLSSSFAFGSSTSEQKASQIHTQL AKRGVNQFLYVNTALIDLYMKLGFTSHAHQLFEDMIYRDVVSWNVMICGYSQNGYPYDALQLFVHMLRQNFRPNQTTIAS LLPSCGIRELILQGRSIHGFAFKAGLGWDTQLNNALISIYAKYDDLEAAQVLFEGMDGKNVVSWNTMIGAYGQNGLSNKA VLCFKEMLKEGLQPSQVTMMNLISANAVPTIVHCCIIKCGFINDASVVTSLVCLYAKQGFTEMAKLLYKYYPTKDLITLT AMTSSYSEKGDIESAVECFIRTLRLDIRPDAIALISVLHGIEDPSHFAIGRAFHGYGLKCALSTDCLVANGLISMYSRFD EIEGTLFLFSEMSEKPLITWNSVISGCVQAGKSSNAMELFSKMNMYGQKPDAITIASLLSGCCQLGNLRTGETLHGYVLR NNVKMEEFTGTALIDMYTKCGRLDYAEKVFYSIKDPCLATWNSIISGYSLYGHEHRAFKCFSELLEQGLEPDRITFLGVL AACTHSGLVHLGMKYYRIMTEECGLVPSLQHYACIVGLLGRAGLFKEAIEFINSMEIRPDSAVWGALLSACCIQQEVKLG ECLAKKLFLLNCNNGGFYVLMSNLYAIVGRWDDVAKVRDMMRDSGGDGCSGVSVIELTSIKDTDNNLRPNEAYLNSSTWQ NLCLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 16 | 25 | 10 | - | – | |
| Gene3D | 20 | 175 | 156 | 4.1E-24 | ||
| Phobius | 26 | 30 | 5 | - | – | |
| PANTHER | 30 | 176 | 147 | 2.1E-123 | – | |
| Phobius | 31 | 725 | 695 | - | – | |
| ProSiteProfiles | 88 | 118 | 31 | 5.952 | ||
| ProSiteProfiles | 119 | 153 | 35 | 12.277 | ||
| Pfam | 119 | 164 | 46 | 2.4E-9 | ||
| TIGRFAM | 121 | 154 | 34 | 1.7E-7 | ||
| PANTHER | 157 | 266 | 110 | 2.1E-123 | – | |
| Gene3D | 181 | 270 | 90 | 4.3E-17 | ||
| ProSiteProfiles | 189 | 219 | 31 | 6.741 | ||
| Pfam | 219 | 265 | 47 | 2.4E-11 | ||
| ProSiteProfiles | 220 | 254 | 35 | 12.43 | ||
| TIGRFAM | 222 | 255 | 34 | 1.6E-8 | ||
| PANTHER | 273 | 360 | 88 | 2.1E-123 | – | |
| Gene3D | 275 | 366 | 92 | 2.2E-9 | ||
| ProSiteProfiles | 284 | 314 | 31 | 5.47 | ||
| ProSiteProfiles | 315 | 349 | 35 | 8.944 | ||
| Pfam | 318 | 341 | 24 | 0.34 | ||
| PANTHER | 369 | 471 | 103 | 2.1E-123 | – | |
| Gene3D | 376 | 515 | 140 | 7.2E-27 | ||
| ProSiteProfiles | 385 | 415 | 31 | 6.544 | ||
| Pfam | 390 | 415 | 26 | 1.4 | ||
| ProSiteProfiles | 416 | 450 | 35 | 11.06 | ||
| Pfam | 418 | 464 | 47 | 2.3E-11 | ||
| TIGRFAM | 418 | 452 | 35 | 5.2E-6 | ||
| ProSiteProfiles | 451 | 485 | 35 | 8.254 | ||
| PANTHER | 471 | 681 | 211 | 2.1E-123 | – | |
| ProSiteProfiles | 486 | 516 | 31 | 7.147 | ||
| Pfam | 491 | 514 | 24 | 0.031 | ||
| Pfam | 516 | 563 | 48 | 2.5E-7 | ||
| Gene3D | 516 | 712 | 197 | 2.0E-28 | ||
| ProSiteProfiles | 517 | 551 | 35 | 10.15 | ||
| TIGRFAM | 520 | 552 | 33 | 5.2E-6 | ||
| ProSiteProfiles | 552 | 587 | 36 | 6.347 | ||
| ProSiteProfiles | 588 | 618 | 31 | 6.741 | ||
| Pfam | 593 | 616 | 24 | 1.2 | ||
| ProSiteProfiles | 654 | 688 | 35 | 6.445 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0355000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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