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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0356800 |
| Transcript ID | LotjaGi1g1v0356800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT4G34110.1 poly(A) binding protein 2; Swiss-Prot: sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2; TrEMBL-Plants: tr|M5XRJ2|M5XRJ2_PRUPE Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0356800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:82974898..82980761) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATTGTATGAAATTTCTTGCTAACAGTCTCACTATATAACCCTCACTCTTCCGCAAATCCCCGCGCCCTTCAGGT CGATGTGCCCTTCCTATCCAAAAAATTGAAAAAATAAAATAAAATTTGCTTCGCTCTAGTTACAGTCGTATCCCTCGCAC TTCCGCCACTGCCGCCGTCGCAGCTCCGGCGGTTTTATCCAAAACCCAAAAAAATCGTTATCAATAGTTAGGGTATACAT TTTGGTAACGCATTTCCGAGAGTTAATTCATATATAAATTTGTTGTTGAATCTTGTAGAAGAAACTTGATACCAATCAAT GGCGCAAATTCACGAGACTGACGCGGTGGCTCAGGAGGCGAATCAGCCGATGCCGACGTCTTTGTACGTCGGAGATCTTG ACACTGAGATCAACGATTCGCAGCTTTACGATCTCTTCAACCAGATCGGCCAGGTTGTTTCCGTTCGGGTCTGCAGGGAC TTGGCCACTCAGCAATCGCTTGGTTATGGCTATGTCAATTTCACTAACCCTAAGGATGGTTCGTTTCGTTCGTCTTCCTT GTTTTCCATTTCAGTTTTACCTAGCATTGGAATTGGAATTCCAATTCATTCATACTATTATTGATTGATTGTATTAGGGT TAATCTCAAATGCATTGTTAGGGTTTATCGCGTTAGGGTTAATTTTGAATACGTATGTTGATTGATTGCGAAATGTTTAT ATTGCACAGCCGCGACGGCGTTGGATGTGCTGAATTTCACTCCGCTGAACGGCAAACCGATTAGGATAATGTACTCTCAT CGTGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTTGTGAAGGTGCTTGCTTCTGACTGATTGTTATTATACCG TTTTTTTTTTCTATAAGTAGCGTCTGATTGGTTAACTTTCTGTTTGATTATTGATTCTTGTAATTTGTTGATGTTGTGGA TTGTGCAGAATTTGGATAAGTCAATTGATCATAAAGCTCTATATGATACCTTTTTGGTTTTCGGAAATATTCTGACTTGC AAGATAGCTACGGATGGTTCTGGCCAGTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAAGAATCTGCACAAAATGC TATTGACAATTTCAATGGCAAGCTGATTGGTGATAAGGAGGTCTATGTTAGTCATTTCCAACGAAAGCAGGACAGAGAGA ATGCTGCTCTCGGTGGCGGGAAGTTTAATAATGTCTATGTGAAAAACCTATCTGAGGCGATGACGGATGATGACTTGAAG AAAATATTTAGTGAATATGGAACTATTACTAGTGCCGTAGTGATGAGAGATGTTGATGGGAAATCGAAATGTTTTGGTTT TGTCAATTTTGAAAATGCAGATGAAGCTGCTAAAGCTGTGGATGCACTTAATGGAAAGAAATTTGATGATAAGGAGTGGT ATGTCGGAAAAGCCAAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGAACAACATGAGCAGAGTATGCAGGAAACAGTT GACAAATATCAAGGCGCAAACTTGTATCTCAAGAACTTGGATGACAATGTTGATGATGAAAAACTCAGGGAACTGTTCTC TGAGTTTGGTACAATAACTTCTTGCAAGGTTTGTGAATATGGGTTCTCCTTTCTGTTTACATCTGCAGCGGTTGTATTTA TCTTTATGAAATGTTTGTTTTTGCCTGACCTGCAGATTATGCGAGATCCACATGGAGTTAGTAGAGGATCTGGATTTGTT GCATTTTCAACTCCTGAGGAAGCAACTCGAGCTGTACGTATAATTCTTTTTTGTCACTATTCCTTAATAATTGACAAGGA ACTTTATTGCTCATATACAGATCTGTTTGTACTTGTAGCTTGGTGAGATGAATGGTAAAATGGTTGATGGAAAACCTCTT TATGTTGCCCTTGCACAGAAAAAAGAAGAGAGAAGGGCAAAGTTACAGGTAATACTATCAAACTGTGGGTCAGCAGTTAA TTATTTGCTTTATATACACTGTGGTCTTCTTTAGGATCAGAATTTCCGGCATTGGGTTCATTAGTAATGATAGTTATTGT GTACTTTCGTGTCTATGTTTATCTCTAATTAGAATTTTACATAAACTTTCATTTGGTAGCACACATTCTCCTTTATTTTT AGATTTAAAGAGGTTATACAACAACAATTGTCAAGGCCTTCTCACATTGGCTAGTAATGGCTACATGGACTAGAGACTAT AATGTCCTATAATAAAAGTGTTCTCAATAGGGTGCTATGTCGGTGCTATCTCCCTGTTGTGGCCCGTAGCAGCCCATGGC CAGCTCTTGGTCATCATCCCGTCACATTGCAGTTTAGAGTGGCCAAGCTATATTGACACTACAAGCATGGCCTTTCCAAA ACCAAAGTGTGCCGTTAGAATATTAATGCTATGGCTGTTATGTAACTTTTTTGGGTGGGGGGGGGGTTTATTTTGGTTTC CTCTTCGGAATCACAATGAAAAAGGTTGGTTTTATAGAGGGTTTCCTCTTGGTGCCATTTCCTTCTATCTGAGACTGAGT GCTAACCCATTGCCCAGCAACCAAGCCAGCATGGACCAGCCACTGCATGACCTCCTATGGCCCGAAGGGTCTATGTTTCC TGATATCTCATCCAGCAGCTTTCAGGGTGCTGTTTACTTCCTTTTATTTCCTTGTTTTCTTTATTTGTTGATTCTTTTTT GCTTTATTTTGGTTTCCTCTTCGGAATTACAATGAAAACGGTTGGTTTAATAGAGGGTTTCCTCTTGGTGCCATTTCCTT CTATCTGAGACTATGAGTGCTAACCCATTGCCCAGCAACCAAGCCAGCATGGACCAGCCACTGCATGACCTCCTATTGCC CGAAGGGTCTATGTTTCCTGACATCTCACCCAGCAGCTTTCAGAGTTCTGTTTACTTCCTTTTATTTCCTTGTTTTCTTT ATTTGTTGACTCTTTTTTGCTTTATTTTGTCTCTTCTGGTTGTTATTCTCTCCCTCTTTTTCTTTACCTTGTTGGTTCTC TTGAGCCCATTTTGGATACAGAGTTATTGGAGCTTACCTACGAGCAAAAGAACTAGATAATCTCCAATAAGTGCTCTTTG GTTTGCATCCAAAAGTTTTTTTTTGCCTTTATTCACCCCTTTTTTCTCTATCTCCTCACTTGCCAGACATGGCAACTCCC TCTCAAGTAGAACCATCTGGCCCTTTTTTGCTTTATTTTGTCTCTTCTGGCTGTTATTCTCTCCCTCTTTTTCTTTACCT TGTTGGTTCTCTTGAGCCCATTTTGGATACAGAGTAATTGGAGCTTACCTACGAGCAAAAGAACTAGATAATCTCCAATA AGTGCTCTTTGGTTTGCATCCAAAAGGTTTTTTTGCCTTTATTCACCCCTTTTTTCTCTATCTCCTCACTTGCCAGACAT GGCAACTCCCTCTCAAGTAGAACCATCTGGCCAAAGAAACAACCCTTCATCAGCAGCTGAAATTCGGTGTCTTCTTTCGA ATGTTTAATCCCACTGGTTATGTGTTTCTTTTATTTAAATAAAGGTCATGTGCTTCCATTGTTTAACCTTTCCATTTAAC TATTTTTTTTCACGCTCCAAGTAGGACTATTGACCTCCAACTTTTATACTTCTTTTAGGGGAAAGCATTTCTTTCTCTTC TAAAAGTTGTTTTCAAAAAAAATGTAATTCTGCATTTTTTAAATAAGGCAGAAGTTTCAAAAAGCTATTTCATGTTTTTT TAAAGCAAAAAATTGTAGGTTTTGAACAAAGTCTAAAAAAATGCTACAATACAAAATCACTTCTTTCTTCAAGGTTAAAC AACCTGGTCCTATATCGTATGCAAAAAAAATATTACGGTATGAACAACCTGTCTTAGATTCACTTTTTTCGTACAGGCAC AATTTTCACAAATGAGGCCAGTTACCATGGTCTCTTCTATTGCACCTCATATGCCTATGTACCCTCCAGGAGCTGCTGGG ATAGGACAACAATTTTTGTACGGGCAACCACCCATCATACCTCAAGTAATTCAAAAATTGTTATTAACTTCATTTTTAAT TTTCAGTATTCCTGATATCATGAATTCATGATTTTGTAGATGATCTCCATATTTTGTGAAGAAAATATGATTGTCATCTT TTATATTAGCTCGTTAATTCTTCACAATTCAGTTTTTTTGCTTAGTGGCCTGCCTATAACTGCTTCAGCAATAGATTTGA TAGGACGTGCTGTATTCTCTTCAACTTGCATCGATTACTAGTCTGTGTTGCCATATTAAATGAGAATTTACCTTTCACAT GTTATCCTCATATATGTTGAATTTATATTTATAAATTAAGCAATAATAAATACAGGGTGGATATTTCCAGCAGCAACTTC TTCCTGGAATGAGACCAGGTGGTGGTCCATTGTCAAACTTCTATGTTCCACTGGGGCATCAGGGTCAACAAGGTCAGCGC CCAGGTGGACGCCTAGGAGCAGGCCCTATGCAACAACCCCAGCAGCCAGTGCCACTTATGCAGCAACAGGTCTGCTCATT CTTAACTTCTGTAGTTTCTGTTTTTTTTTTCTCCTATGTTCTTTTAGCTTGAGGTTGACATACCAAATGTTGCGTTTCTA AGATGCACCCAAGGGGACGTGTCTATCGATATCGTCCTGGTCACAACCTGCAAAATGTTCCACTGCCGGGAGCAGCTGGT GGCGTGGGAGTGTCCATTCAGGCCCTGGCTACAGCCCTTGCAGATGCTACTCCTGAAAAGCAGAGGACTGTAAGACCTGT TTCCCCTATTGTTTCAACACATTTGGGTTGAGTACTTTTTGTTTTATGGGCACTAGGAAATTGTCACTGACACTTTTTGG TGAATGGCATTTGGTATGATAGATGCTTGGTGAAGTTTTGTACCCGCTAGTAGATAAGCTGGAGCATGATGCAGCAGCAA AGCTCACAGGTATGCTTTTGGAGATGGACCAGACTGAGGTTTTACATCTGATTGAGTCACCAGATGCTCTCAAGGCGAAA GTTGCTGAAGCGATGGATGTGCTGAGGAATGTTGCTCGCCAGCAATCAAACACCCCTATCGATCAACTGGCTTCTCTCTC TCTGAATGACCTGTCTTAGATTCTTATAAAAAAATGTCTTAGTTTTCTTTGAACAATCTCTGAATTATCAACTGGTTTCT GTTTCAGTTTTACTTCGGTTGTTTGATGTGACCAAACTAGATTTCAGTTTTTCATCTGAACCCAGACACTTGAATACAAG CGATAACTCATGTTTCTTTTTCCGATGGCGCAGTAGTACAGTTAGTATTTTAGGCAGTCCTTCTCCTTAAATTTATAGCC TCTTCACCTTAACAAGGGTTTTAAAATGTGTGTCAATGGGCACCATAATTTTATGAAAGTGAAGGGCTTAGGCGCTTAGC ACTGAGAGAGGAAGGGACAGAGAGAGCAGGTAACACAGCATAGAGAGCTGATAAATGAAGTGGGAATCTTCATCTTTTTA TCCTTCATATGTGAAATCTACTGTTAAGCTTCAGCCTACCAAAAATATATCTAGTGTTTTTTCATCGACTGGTAAAACAA TTGCACACAATGATGGATGTTTGTCTCTGTGACTATGAGTGATATTTGCTCTCTGTTGAAGCCATAAGAAAACAGCATTT GATATTTCTCAACTTCATTGTACTACCATTACCATGCTTCAAAGGCTTGAATCTCCTCCCAAATAGAGATCATGAACTAC AAGTTTGCATCCCCTATAATCCTTTTTTCACACTGAATGAACAAAACCATCAATACAGTGGATATGAGATCATCAATTCA AAATCCAATACCGAGCGCCTGAAA
CDS sequence (LotjaGi1g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCAAATTCACGAGACTGACGCGGTGGCTCAGGAGGCGAATCAGCCGATGCCGACGTCTTTGTACGTCGGAGATCT TGACACTGAGATCAACGATTCGCAGCTTTACGATCTCTTCAACCAGATCGGCCAGGTTGTTTCCGTTCGGGTCTGCAGGG ACTTGGCCACTCAGCAATCGCTTGGTTATGGCTATGTCAATTTCACTAACCCTAAGGATGCCGCGACGGCGTTGGATGTG CTGAATTTCACTCCGCTGAACGGCAAACCGATTAGGATAATGTACTCTCATCGTGACCCTAGTGTTCGGAAGAGTGGTGC TGCTAATATTTTTGTGAAGAATTTGGATAAGTCAATTGATCATAAAGCTCTATATGATACCTTTTTGGTTTTCGGAAATA TTCTGACTTGCAAGATAGCTACGGATGGTTCTGGCCAGTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAAGAATCT GCACAAAATGCTATTGACAATTTCAATGGCAAGCTGATTGGTGATAAGGAGGTCTATGTTAGTCATTTCCAACGAAAGCA GGACAGAGAGAATGCTGCTCTCGGTGGCGGGAAGTTTAATAATGTCTATGTGAAAAACCTATCTGAGGCGATGACGGATG ATGACTTGAAGAAAATATTTAGTGAATATGGAACTATTACTAGTGCCGTAGTGATGAGAGATGTTGATGGGAAATCGAAA TGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGAAGCTGCTAAAGCTGTGGATGCACTTAATGGAAAGAAATTTGATGA TAAGGAGTGGTATGTCGGAAAAGCCAAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGAACAACATGAGCAGAGTATGC AGGAAACAGTTGACAAATATCAAGGCGCAAACTTGTATCTCAAGAACTTGGATGACAATGTTGATGATGAAAAACTCAGG GAACTGTTCTCTGAGTTTGGTACAATAACTTCTTGCAAGATTATGCGAGATCCACATGGAGTTAGTAGAGGATCTGGATT TGTTGCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGATGGAAAACCTCTTT ATGTTGCCCTTGCACAGAAAAAAGAAGAGAGAAGGGCAAAGTTACAGGCACAATTTTCACAAATGAGGCCAGTTACCATG GTCTCTTCTATTGCACCTCATATGCCTATGTACCCTCCAGGAGCTGCTGGGATAGGACAACAATTTTTGTACGGGCAACC ACCCATCATACCTCAAGGTGGATATTTCCAGCAGCAACTTCTTCCTGGAATGAGACCAGGTGGTGGTCCATTGTCAAACT TCTATGTTCCACTGGGGCATCAGGGTCAACAAGGTCAGCGCCCAGGTGGACGCCTAGGAGCAGGCCCTATGCAACAACCC CAGCAGCCAGTGCCACTTATGCAGCAACAGATGCACCCAAGGGGACGTGTCTATCGATATCGTCCTGGTCACAACCTGCA AAATGTTCCACTGCCGGGAGCAGCTGGTGGCGTGGGAGTGTCCATTCAGGCCCTGGCTACAGCCCTTGCAGATGCTACTC CTGAAAAGCAGAGGACTATGCTTGGTGAAGTTTTGTACCCGCTAGTAGATAAGCTGGAGCATGATGCAGCAGCAAAGCTC ACAGGTATGCTTTTGGAGATGGACCAGACTGAGGTTTTACATCTGATTGAGTCACCAGATGCTCTCAAGGCGAAAGTTGC TGAAGCGATGGATGTGCTGAGGAATGTTGCTCGCCAGCAATCAAACACCCCTATCGATCAACTGGCTTCTCTCTCTCTGA ATGACCTGTCTTAG
Protein sequence (LotjaGi1g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQIHETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV LNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEES AQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSK CFGFVNFENADEAAKAVDALNGKKFDDKEWYVGKAKKKSERELELKEQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR ELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRALGEMNGKMVDGKPLYVALAQKKEERRAKLQAQFSQMRPVTM VSSIAPHMPMYPPGAAGIGQQFLYGQPPIIPQGGYFQQQLLPGMRPGGGPLSNFYVPLGHQGQQGQRPGGRLGAGPMQQP QQPVPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGVGVSIQALATALADATPEKQRTMLGEVLYPLVDKLEHDAAAKL TGMLLEMDQTEVLHLIESPDALKAKVAEAMDVLRNVARQQSNTPIDQLASLSLNDLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 107 | 106 | 4.0E-24 | ||
| PANTHER | 15 | 601 | 587 | 1.7E-278 | – | |
| PANTHER | 15 | 601 | 587 | 1.7E-278 | – | |
| SUPERFAMILY | 19 | 189 | 171 | 4.48E-49 | ||
| ProSiteProfiles | 20 | 98 | 79 | 18.427 | ||
| CDD | 21 | 100 | 80 | 3.91811E-44 | – | |
| TIGRFAM | 21 | 594 | 574 | 6.2E-213 | ||
| SMART | 21 | 94 | 74 | 15.0 | ||
| SMART | 21 | 94 | 74 | 1.2E-21 | ||
| Pfam | 22 | 92 | 71 | 4.3E-19 | ||
| CDD | 106 | 182 | 77 | 1.28132E-43 | – | |
| ProSiteProfiles | 108 | 185 | 78 | 18.427 | ||
| Gene3D | 108 | 194 | 87 | 1.9E-23 | ||
| SMART | 109 | 181 | 73 | 3.3E-24 | ||
| SMART | 109 | 181 | 73 | 0.86 | ||
| Pfam | 110 | 178 | 69 | 3.6E-20 | ||
| Gene3D | 197 | 301 | 105 | 1.3E-28 | ||
| SUPERFAMILY | 199 | 282 | 84 | 2.82E-29 | ||
| CDD | 199 | 278 | 80 | 8.17631E-43 | – | |
| ProSiteProfiles | 200 | 277 | 78 | 19.57 | ||
| SMART | 201 | 273 | 73 | 0.61 | ||
| SMART | 201 | 273 | 73 | 1.5E-28 | ||
| Pfam | 202 | 270 | 69 | 1.3E-24 | ||
| Coils | 276 | 296 | 21 | - | – | |
| SUPERFAMILY | 297 | 395 | 99 | 4.43E-30 | ||
| CDD | 302 | 380 | 79 | 1.57251E-48 | – | |
| Gene3D | 302 | 403 | 102 | 3.6E-29 | ||
| ProSiteProfiles | 303 | 380 | 78 | 20.44 | ||
| SMART | 304 | 376 | 73 | 0.0011 | ||
| SMART | 304 | 376 | 73 | 3.1E-28 | ||
| Pfam | 305 | 373 | 69 | 7.5E-22 | ||
| MobiDBLite | 461 | 481 | 21 | - | – | |
| SUPERFAMILY | 476 | 611 | 136 | 9.68E-39 | ||
| Gene3D | 516 | 600 | 85 | 6.5E-33 | – | |
| ProSiteProfiles | 521 | 598 | 78 | 19.459 | ||
| Pfam | 527 | 593 | 67 | 5.6E-25 | ||
| SMART | 533 | 596 | 64 | 1.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0356800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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