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IPR036053 is a PABC (PABP) domain.
<p>The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains ([interpro:IPR000569]) [[cite:PUB00015091]]. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [[cite:PUB00015092]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Polyadenylate-binding protein; TAIR: AT4G34110.1 poly(A) binding protein 2; Swiss-Prot: sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2; TrEMBL-Plants: tr|M5XRJ2|M5XRJ2_PRUPE Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0356800 | 27 | ||
| – | Polyadenylate-binding protein; TAIR: AT2G36660.1 poly(A) binding protein 7; Swiss-Prot: sp|Q9ZQA8|PABP7_ARATH Polyadenylate-binding protein 7; TrEMBL-Plants: tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0682900 | 26 | ||
| – | ATP-dependent RNA helicase; TAIR: AT4G09730.1 RH39; Swiss-Prot: sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39; TrEMBL-Plants: tr|A0A151T4R6|A0A151T4R6_CAJCA DEAD-box ATP-dependent RNA helicase 39; Found in the gene: LotjaGi2g1v0117100 | 25 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|I1JE12|I1JE12_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi4g1v0076900 | 27 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|A0A0B2PYJ0|A0A0B2PYJ0_GLYSO Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0027000 | 26 | ||
| – | Polyadenylate-binding protein; TAIR: AT1G71770.1 poly(A)-binding protein 5; Swiss-Prot: sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5; TrEMBL-Plants: tr|I1NH63|I1NH63_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0285400 | 26 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 16.67 |