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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0357200 |
| Transcript ID | LotjaGi1g1v0357200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SPla/RYanodine receptor (SPRY) domain protein; TAIR: AT4G06536.1 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q4WRW0|SSH4_ASPFU Protein ssh4; TrEMBL-Plants: tr|V7AT08|V7AT08_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0357200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83068897..83071906) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAACAAAAACACAACAACTTAACCGCAGTTCTTCCATGACTAAAATTCTCTCTCTCCTTTGAAAACAAAACATTAAT CATATCAAATCAAACGCGTTCATTGCCTATGAATTAGACTTTGTCGGTTCTCATAAATCAAATCCAAATGTTTCATCAAA CAAACACAACCTTTGATTTTGTTTTGTGTGCCACTTCATCGTTTCATCTCTCTGACTCTGTTGCTGCATGCTTTCATTGA ACTAGTCTTAGTCCACGCCGCCACCTCATAATCTTCTCCTTTCTCTCATTCTCTTCTTCTTTTCCGATCAGAATTCAGAA CCATCGATGCACAAAGCAAAAGGGTAAGCTGAATAAACCGTAAAGATTATGAACAAGTCGATACTCATTCCGGTGGCGGC GGCGACCGCCGCCGGATTCGCCGCGACCCTTTTGGTGGTTCTCATCTGGCGGTGTTGTCTTCACAAGAAGCGTAGGAATT CTGTTGAGCCTGGAACGGAGAATCCGCCAATAGGGGTTTCTGTTTCACCTTTTCAATTGGATCAAGGGAGCAAGAAAAGT GGAAATTTCTATGCCTTTCGAAGTGGGGTTTCTGGGAAGAGGACAACTCTTTTCAGCTGGGCTGAGAATCCTTCCATGGC TGTTGATGCTGGTGAAAATGGATGGTCTCGATTTGCTTTCACGAACTATAAGAGTTACATGGCTTCTTCTTCGAAGAAGT CTGCACTGTTGGGAATGGGATCGTGTGTAGCACCACCAGCAGTGGGTGGTTCAGGAAGAGAATCAGAGGCTGAGATAACA TGGGAAGTTTCAAGGGGTTCAGCTGAGTTTATGCAGAAGGTGAGACTCAACCCTGGGATGAGAAACTCTCATCAGAACAA CAACAACAACAATAACAACAACAACCCTTCTATGGGTGTTGCTTCTGTGATTAGAACAGTTTTACCATTGCCTGGTCCTC CTTTGGGAAACTATGCTTTCCCACAAGAAGCCTATTTTGAAATCATCATCTTGTATTCTGGTGTTGGTGACAGTGAATCT GTTGGAAAAGGTGGTGAAGGTGAGAAGACCATGCTTCTGGTTCAGGGGAATTCAAATGCTAAAGGGAATTCGGAGGCTCT TGTTCATGTAACCAGCAGCAATGGTCATAAGATCAACAGTGTTGAGGAAATTAAGCTTGATAGCAGAGAGGGTGGGAAAA AGAGTGAATCTGTGAAATTCTCATTAGGATTAACGACTGGTGGTCCTGTTCTTTTGAATGTTCCAGGCAGCTACCCTGGG AGTATTGGGTTCAACTCCAATGGTTCTGTCTATCTTGATGGTAACAAATTTTCCACTTTCATTTATTTACCATTTGAGCA AATGCATCATGATCATTTCTTCATTCCTTTAGATTTAGATTTGTTGGCTGGTGTAGTGTGAACATGACAGATTCACAATG TACAACCTTTTTTCTTTTTGTCTGATGTGTTAGGAAGGGAACAAGGATAACAATATGGTCACAGTCAATGTTTCATTGCA CAAAGTACAACCTTTTTTCAATGTTTCATCGTATAACAACATGGTCACAGACTCACAGTCATACAGGTCAAGATCCTCTG TCATCAAATGATGTCTCAATTTCATGTCCCATCCCACCAATGTCATCTTGTCATATCAATTAAAAAGACATAGAGGGGCA ATTACAAACTTACACTGTGATTTTTAATTGATATGTCACAATTTTATTGGTGAGACAGAAAATGAGACTCAAATTGATTA CAAAAGATTTCAGTCCATAGGGCACACATAACAAATAGCAGTAGTACTATGATCTCAGTTTCATTATTTTACTAGTCTAT TGGGATTCAAAAAGCAGATTAGATTGCCACATAAGATGCATACTTACATTAAAACATGCTTCACAGAATCACAGTTCATA TTTCTGATATATGTACATATATTGAGACATCTAAGTATGAAACTTCCTTACAGGAATGAAACTTGTATTCGAGTCTGAGA AGGCAGAATGGATAGGAGCTGATAAGGTTATTGGCTGTGGGTTTGATCCAAGGCAGAAGAAAGTTTTCTTCACATTAGAC TCAGAGTTGATGCATGTAATCCATTGCCAGTCAGAAGGATTTGGCACTCCACTCTATCCAACATTGGCTGCAAATATAGA CATTCAGGTACTAGTTAATTTTGGACAAAGTGCATTTAAATATGCACCTGCAAATGCGCAGAGAACACCAAACCCATGTT TTATAGCACCACTTGTGAATTCGCCAACCCTGAGCTACGACGACAGCAAGGAACTATTCTCTATGGGAAGGATTGATTCT CAATGGCTTAATCGGTCTGCAACCAAAGGAAGCCACAACAGCAATGGGAATTATTTTCGAACTATGGATTTCGATGAGGA GTCTGAGGCTGATCTATTTGAAATTGTCTTAGATGGTCCTGGAAAATCTCCATACAGATCATCTACATAGCTTACAACAA GTGCACATGGATTTTGTCTTGGCTCTGGTATTTAACATCATGGTTGCTTGTCCCAATTGGACATGGCTATGTATCGCCTT CATTTGGAAGAATGCTTGCTGTATCTCATCATGTGAGGGGGATCTTACGCACAGATGATTGATGATTCAGCGCTATAGGG ATACACAGAACACACATAGAAAGAGATTCATATACGTAGCAGACTAGTTTATCTATCATCCCTGATTGGGGAGCCTTAAC ATTGACTAACTAGTAATATACAGTTTGTCTTCACTAATTGTTTACTCACTCTTATCTTGTGGCTAAACATTCAGTTTTGC TTTTGGAAGAGGATATTGTCTCCCCTTCTGTAAATATTGTTCATATAATAAAATTTGTACTTTCAGGCATTCTCTTCAAC TTTTTGTAGAACTTCTTTTTTCTGAAACGTGTGATGAATAGGTTACTAAAGAGGTTACTAGAAGAGTTACTCTGTCCATA TTTCAGATCTTTGGGGTGTCCTAAAGGGATTAAGACTCGCAGCTCCCCTC
CDS sequence (LotjaGi1g1v0357200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAGTCGATACTCATTCCGGTGGCGGCGGCGACCGCCGCCGGATTCGCCGCGACCCTTTTGGTGGTTCTCATCTG GCGGTGTTGTCTTCACAAGAAGCGTAGGAATTCTGTTGAGCCTGGAACGGAGAATCCGCCAATAGGGGTTTCTGTTTCAC CTTTTCAATTGGATCAAGGGAGCAAGAAAAGTGGAAATTTCTATGCCTTTCGAAGTGGGGTTTCTGGGAAGAGGACAACT CTTTTCAGCTGGGCTGAGAATCCTTCCATGGCTGTTGATGCTGGTGAAAATGGATGGTCTCGATTTGCTTTCACGAACTA TAAGAGTTACATGGCTTCTTCTTCGAAGAAGTCTGCACTGTTGGGAATGGGATCGTGTGTAGCACCACCAGCAGTGGGTG GTTCAGGAAGAGAATCAGAGGCTGAGATAACATGGGAAGTTTCAAGGGGTTCAGCTGAGTTTATGCAGAAGGTGAGACTC AACCCTGGGATGAGAAACTCTCATCAGAACAACAACAACAACAATAACAACAACAACCCTTCTATGGGTGTTGCTTCTGT GATTAGAACAGTTTTACCATTGCCTGGTCCTCCTTTGGGAAACTATGCTTTCCCACAAGAAGCCTATTTTGAAATCATCA TCTTGTATTCTGGTGTTGGTGACAGTGAATCTGTTGGAAAAGGTGGTGAAGGTGAGAAGACCATGCTTCTGGTTCAGGGG AATTCAAATGCTAAAGGGAATTCGGAGGCTCTTGTTCATGTAACCAGCAGCAATGGTCATAAGATCAACAGTGTTGAGGA AATTAAGCTTGATAGCAGAGAGGGTGGGAAAAAGAGTGAATCTGTGAAATTCTCATTAGGATTAACGACTGGTGGTCCTG TTCTTTTGAATGTTCCAGGCAGCTACCCTGGGAGTATTGGGTTCAACTCCAATGGTTCTGTCTATCTTGATGGAATGAAA CTTGTATTCGAGTCTGAGAAGGCAGAATGGATAGGAGCTGATAAGGTTATTGGCTGTGGGTTTGATCCAAGGCAGAAGAA AGTTTTCTTCACATTAGACTCAGAGTTGATGCATGTAATCCATTGCCAGTCAGAAGGATTTGGCACTCCACTCTATCCAA CATTGGCTGCAAATATAGACATTCAGGTACTAGTTAATTTTGGACAAAGTGCATTTAAATATGCACCTGCAAATGCGCAG AGAACACCAAACCCATGTTTTATAGCACCACTTGTGAATTCGCCAACCCTGAGCTACGACGACAGCAAGGAACTATTCTC TATGGGAAGGATTGATTCTCAATGGCTTAATCGGTCTGCAACCAAAGGAAGCCACAACAGCAATGGGAATTATTTTCGAA CTATGGATTTCGATGAGGAGTCTGAGGCTGATCTATTTGAAATTGTCTTAGATGGTCCTGGAAAATCTCCATACAGATCA TCTACATAG
Protein sequence (LotjaGi1g1v0357200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKSILIPVAAATAAGFAATLLVVLIWRCCLHKKRRNSVEPGTENPPIGVSVSPFQLDQGSKKSGNFYAFRSGVSGKRTT LFSWAENPSMAVDAGENGWSRFAFTNYKSYMASSSKKSALLGMGSCVAPPAVGGSGRESEAEITWEVSRGSAEFMQKVRL NPGMRNSHQNNNNNNNNNNPSMGVASVIRTVLPLPGPPLGNYAFPQEAYFEIIILYSGVGDSESVGKGGEGEKTMLLVQG NSNAKGNSEALVHVTSSNGHKINSVEEIKLDSREGGKKSESVKFSLGLTTGGPVLLNVPGSYPGSIGFNSNGSVYLDGMK LVFESEKAEWIGADKVIGCGFDPRQKKVFFTLDSELMHVIHCQSEGFGTPLYPTLAANIDIQVLVNFGQSAFKYAPANAQ RTPNPCFIAPLVNSPTLSYDDSKELFSMGRIDSQWLNRSATKGSHNSNGNYFRTMDFDEESEADLFEIVLDGPGKSPYRS ST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 466 | 463 | 4.6E-139 | – | |
| PANTHER | 4 | 466 | 463 | 4.6E-139 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 482 | 455 | - | – | |
| MobiDBLite | 37 | 56 | 20 | - | – | |
| CDD | 267 | 388 | 122 | 9.86881E-15 | – | |
| Pfam | 280 | 388 | 109 | 1.8E-5 | ||
| SUPERFAMILY | 285 | 394 | 110 | 3.56E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0357200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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