Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR025995

Source: InterPro

Description

IPR025995 is a RNA binding activity-knot of a chromodomain.

<p>This is a novel knotted tudor domain which is required for binding to RNA. The knot influences the loop conformation of the helical turn Ht2 (residues 61-63) that is located at the side opposite the knot in the tudor domain-chromo domain; stabilisation of Ht2 is essential for RNA binding [[cite:PUB00049446]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj0g3v0078259.1
–
Domains
3
Lj3g3v0807640.1
– PREDICTED: MYST-like histone acetyltransferase 2-like isoform X2 [Cicer arietinum] gi|502127234|ref|XP_004499615.1|
Domains
18
LotjaGi1g1v0358500.2
– Mortality factor 4-like protein 1; TAIR: AT1G02740.1 MRG family protein; Swiss-Prot: sp|Q4V3E2|MRG2_ARATH Protein MRG2; TrEMBL-Plants: tr|A0A0B2PA75|A0A0B2PA75_GLYSO Chromatin modification-related protein EAF3; Found in the gene: LotjaGi1g1v0358500
Domains
16
LotjaGi3g1v0100200.1
– Histone acetyltransferase; TAIR: AT5G09740.1 histone acetyltransferase of the MYST family 2; Swiss-Prot: sp|Q9FLF7|MYST1_ARATH Histone acetyltransferase of the MYST family 1; TrEMBL-Plants: tr|G7IVB8|G7IVB8_MEDTR Histone acetyltransferase; Found in the gene: LotjaGi3g1v0100200
Domains
23
LotjaGi3g1v0100200.2
– Histone acetyltransferase; TAIR: AT5G09740.2 histone acetyltransferase of the MYST family 2; Swiss-Prot: sp|Q9FLF7|MYST1_ARATH Histone acetyltransferase of the MYST family 1; TrEMBL-Plants: tr|A0A176VBZ0|A0A176VBZ0_MARPO Histone acetyltransferase; Found in the gene: LotjaGi3g1v0100200
Domains
20
LotjaGi4g1v0100000_LC.1
– Mortality factor 4-like protein 1; TAIR: AT4G37280.1 MRG family protein; Swiss-Prot: sp|Q94C32|MRG1_ARATH Protein MRG1; TrEMBL-Plants: tr|I1K283|I1K283_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0100000_LC
Domains
17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67