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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0359500 |
| Transcript ID | LotjaGi1g1v0359500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT5G56510.1 pumilio 12; Swiss-Prot: sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12; TrEMBL-Plants: tr|K7KT25|K7KT25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0359500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83428309..83432016) extracted from Lotus japonicus Gifu genome v1.2.
ACCAAACACAGTTTCTCTCTCCTATTCTCATGTTTGTTTCTCTCTCTAGTTTCTGAGCATGAAAAGTTACTATAAATTGC ATGCAGAACGCTACTCATAGGAATACTCCCCTTCCCATCCTATCCCTCAAACCAAACCAAATCAAATCAATTCACTTTCC TCAAAATTAATCAAAAATCCAAAACCCTTTCCTTCCCCTAAACCTCCCTCACTCTCCGACCACCACCGCCGCCGATGTCA TCGTCCAGAGGTTTCGGTTTCCCAATCGCCGCCGATGATGCTTCACATTCTGATTCTTTCTACCTCTCTAGCTACTACCA CCCAAAACCCCTCCTCCACAAGAATCAAACCCTAGAAGACGCCTTCACTCGTCTCTCCCTCTCCACCTCCGCCTTCAATC CTCCACCTCTCGATCACGCTTTCAGCCGCCACGCGTTTCACCCTCCCAATCTCACCCAAACCGGGTTCAACGCCGCTAAT GCTGGTTCTGAATCGCTGTCGTCAGGGTTTCTGGATTCTGTTCCTCTGTTGAGGCAGAGCTCCGGTTTCTTCAACGGCGG CGCTGGTGATTTGTTGGGTGAAATCGGTGAAATTCCAAGGATGGATTTGAACGAGTGCTGGAGGGGGAGTGTTTTGTCTT TTGCTAAGGATCAATATGGATGTAGGATTTTGCAGGAGAGGATGAAGAGAATGGCGGCTGAGGATTTTTCCTTTATCTTC CTTGAGCTGATTGATCACGTGACTGAGCTCATGGTGGACCCTTTTGGGAACTATGTTTTTCAGAAGATGGTGGAGATTTG CAGTGATGAACAGAGGACTCGCATTGTTTTGGTGGTCACACAGCCTAATTTTCTCTTGGTCAGAGTTTGTCTCAAGCCAC ATGGGTATCTATATTGTCTCTCAACATTCTCTGTTTGACTAGTTTAAGATTCATGTCTTGTTTCTTGTCTCTGAAGTTAT CTTGATTGGAAATTTGTGGTGTTTCATTTTGCTTTTTCTTCTTTCAGAACGCGTTCTGTGGAGCGATTGTTGGAGAGTGT CACCAATGAAGAGCAAAGAGATCTCATTATGGCTGCTTTGAGCCCTGGTGCTGTTGTGTTAGCTAAGGATACAAATGGTC ATCGTGTTGTTCTGTATTGTTTGAAACATTTCTCTGGAGAAGCTACTAAGGTAGTTTTTTGTTGTGTTCATTGGACTTTG TTTGAATTCACACATTCAATTTTGATGTTAGCATTTGGAAATGACTAATGTATTGAAATGCTGGACATGTGTGAGGATAA GGCTTTTGTAAAATGTTTAAGTGCGTGTTTGGATACACAATGGAACCACGGTGAGCCAAATCACGATGGATAGAAACAAC TTTCCTTTGCTTTTGGATTGTCCAATGTGATTTTGACTTTACTGTGATTTCTTGTCGTCTATCCAAACATTCACCATGAT CTTATCATGGTCCATGCCATCAGGAAAACAGATCCTTCTACTTCATGTTCAAAGGGTTGACTTGGAGCATTTTGAAGTTG ACTTCCATCTGACTTGAGCTGGAAGTTATTTATTCGTTTGTGGAAGTTCTGTAATGATATACAAACTGAAGTTCTGTGAA GTATTTTATTAGTTTGTGGGACCTTTTAGCCTTATGTTACTCTTGTTTGAACATGTACACTTTACACGTTTTCCTTTTCA GTGTTGTCAAATAGTGGTTATAGCGGCGCTCTGAGGGCTCACCGCTATTCCGCTATTTGCCGCCATGAGGGCAAGAAATA ACAGATTTTTTGCTTTCCGCTATTTTCCGCGGTCCGCGATTAACACTGTTCCTTTTTTTCATGCACATTTTTGTTTTGAA GTAAATGAATAGTGACCAGAAGTTCAAAATAAAGGGGAAAAAAGTTCACTAATGTTACTGGATAATTCTCGATTTGTCAA ATTACTTCACTTTAGTTTCATCAAGTTCTGATTGTTTACTTTCATCACAGTATCTTCTGAATGAGGTGGCAAACAACTCG TTTGGCATAGCCAAAGATAAGACTGGGTGCTGTGTGCTGCAGCAGTGCATTCTCCATGCTATTGGAGAAACCAAAATGAG GCTGATTGCTGATGTCATTGTAAATGCTTCCCTCCTAGCTGAGGACTGCTACGGGTTTGTATTTTACAAGTATCAATTTT TTTCCTAGTATATGATTCACTATACTAAATTTTTCTCGTGTATTTTGTTTCCCTGTCTGCAGCAACTATGTTGTGCAACA TTTATTGTCTCTGAAAATACCAGTAGTTACAGAAAATCTACTCAGACAACTTCAAGGGAAGTTTACATATCTTGCCTGCA ACAAGTATGGGAGTAATGTGGTGGAGAAGTTCTTTCAAGAATCAGGAGAAATGCACTCAATGCGTATTGTTTTAGAGTTG CTCCATGATCCCAATGTCGCGAGGCTTCTTGTGGATCCATATGGTAATTATGTCATCAAAACGGCCCTGATGATATCTAA GGTCAGTATGCACTGCTTGATCTTTGTGTTTAAATGTTTATGCATTACTCTAGATTCCCCTATTTTCATAGCCCATCAAT CTAATTTAGTGCACATTTGGCAATCCTTCTACAATTGATTCTTAAACCAAAATCGATTATTGGGAGAAACTTATGTGGGT AGCTTGTGAGAAATAAAAAAGCTGATCCAAACATTATAGTAGTTCGTCGACATCTTAGCTGGTGGCTAAAGATTGAATTG CAATGGTTTGGCTCTCTTACGTGGAATTTTTTCTCAACAAAATAAAGCTCTACTTGAAGAAGCTGGCTATTTTTTTGTGC CTTTAGAGGCCTAAATTATAATCCAAACTAAAAGACTTGAAATGGCATTGATCTGTAGACAATTTTTAGCAGAGGATAGT TTTTGCTCTTGTTGAAAACTCCTCAGTGGAGACAAATCTGTATCATGTGGTGTCTCTTGGAATCTGCAAAGTAATATAAA TAAACCTTGTATTATACTCATTATTCTATTATCCACCTTCCTCTTTATAATTTTAAATTGCTAGAAAGCTCGTTTACTGG TTTGTTGTGATAACTTGAATTTTCTCTCTATTTCTTAAAATGCAGGGAGCCATTCGGAATGCTTTACTCCAGCTGATCCA ACTAAACTCCACAATGATGCGAAACAACCTCTATGGCAAGAAGTTACTTGATAGGTTTGACAGGGGAAATATTCGACACA TTTAAACATGCATTACAGTAACTTCTAAATTGCTCAAAAGATTTTTCATGGCCACAAGGAGATTACACTTTTTGACTACC TCCTTTTTTTTCTTCTGTCGCATTACTCATACTTTCATAAGATGTCTTAGGTTGTGTGTTGTTTGTAGTTTATATGTTAG TTTCTCTCAGTTTTGTTACTGGCATAGGATGGAAGGACTTGGTTCTCAGAGACTATAGAGGACAATGCTCAGCTGTATAG GAGATAACTAGCAACATACATGATCCTCTCAAGGGAAAAGCTACAATGGTTGATACAAATTTGTGATATTCTAAGTGTAA TTCTTGTGATTCTACTGTTATGTACCCAAAAAATAAACCATCAGGATAGATTTCAAGTGTTTCTAGGTTCCTTATTTTCC TTCCATGTAGGTCCTTTTGTAATTTTGTTTCATACTTTGAAACATTATTTTTGAAAGATTTGAAGTTATAAACATATGTT TGTGGCTTTGTGCTTAGGAAATACGAAT
CDS sequence (LotjaGi1g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCGTCCAGAGGTTTCGGTTTCCCAATCGCCGCCGATGATGCTTCACATTCTGATTCTTTCTACCTCTCTAGCTA CTACCACCCAAAACCCCTCCTCCACAAGAATCAAACCCTAGAAGACGCCTTCACTCGTCTCTCCCTCTCCACCTCCGCCT TCAATCCTCCACCTCTCGATCACGCTTTCAGCCGCCACGCGTTTCACCCTCCCAATCTCACCCAAACCGGGTTCAACGCC GCTAATGCTGGTTCTGAATCGCTGTCGTCAGGGTTTCTGGATTCTGTTCCTCTGTTGAGGCAGAGCTCCGGTTTCTTCAA CGGCGGCGCTGGTGATTTGTTGGGTGAAATCGGTGAAATTCCAAGGATGGATTTGAACGAGTGCTGGAGGGGGAGTGTTT TGTCTTTTGCTAAGGATCAATATGGATGTAGGATTTTGCAGGAGAGGATGAAGAGAATGGCGGCTGAGGATTTTTCCTTT ATCTTCCTTGAGCTGATTGATCACGTGACTGAGCTCATGGTGGACCCTTTTGGGAACTATGTTTTTCAGAAGATGGTGGA GATTTGCAGTGATGAACAGAGGACTCGCATTGTTTTGGTGGTCACACAGCCTAATTTTCTCTTGGTCAGAGTTTGTCTCA AGCCACATGGAACGCGTTCTGTGGAGCGATTGTTGGAGAGTGTCACCAATGAAGAGCAAAGAGATCTCATTATGGCTGCT TTGAGCCCTGGTGCTGTTGTGTTAGCTAAGGATACAAATGGTCATCGTGTTGTTCTGTATTGTTTGAAACATTTCTCTGG AGAAGCTACTAAGTATCTTCTGAATGAGGTGGCAAACAACTCGTTTGGCATAGCCAAAGATAAGACTGGGTGCTGTGTGC TGCAGCAGTGCATTCTCCATGCTATTGGAGAAACCAAAATGAGGCTGATTGCTGATGTCATTGTAAATGCTTCCCTCCTA GCTGAGGACTGCTACGGCAACTATGTTGTGCAACATTTATTGTCTCTGAAAATACCAGTAGTTACAGAAAATCTACTCAG ACAACTTCAAGGGAAGTTTACATATCTTGCCTGCAACAAGTATGGGAGTAATGTGGTGGAGAAGTTCTTTCAAGAATCAG GAGAAATGCACTCAATGCGTATTGTTTTAGAGTTGCTCCATGATCCCAATGTCGCGAGGCTTCTTGTGGATCCATATGGT AATTATGTCATCAAAACGGCCCTGATGATATCTAAGGGAGCCATTCGGAATGCTTTACTCCAGCTGATCCAACTAAACTC CACAATGATGCGAAACAACCTCTATGGCAAGAAGTTACTTGATAGGTTTGACAGGGGAAATATTCGACACATTTAA
Protein sequence (LotjaGi1g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSRGFGFPIAADDASHSDSFYLSSYYHPKPLLHKNQTLEDAFTRLSLSTSAFNPPPLDHAFSRHAFHPPNLTQTGFNA ANAGSESLSSGFLDSVPLLRQSSGFFNGGAGDLLGEIGEIPRMDLNECWRGSVLSFAKDQYGCRILQERMKRMAAEDFSF IFLELIDHVTELMVDPFGNYVFQKMVEICSDEQRTRIVLVVTQPNFLLVRVCLKPHGTRSVERLLESVTNEEQRDLIMAA LSPGAVVLAKDTNGHRVVLYCLKHFSGEATKYLLNEVANNSFGIAKDKTGCCVLQQCILHAIGETKMRLIADVIVNASLL AEDCYGNYVVQHLLSLKIPVVTENLLRQLQGKFTYLACNKYGSNVVEKFFQESGEMHSMRIVLELLHDPNVARLLVDPYG NYVIKTALMISKGAIRNALLQLIQLNSTMMRNNLYGKKLLDRFDRGNIRHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 105 | 447 | 343 | 72.519 | ||
| Gene3D | 119 | 449 | 331 | 5.0E-95 | ||
| ProSiteProfiles | 124 | 163 | 40 | 7.567 | ||
| SUPERFAMILY | 127 | 443 | 317 | 1.27E-80 | ||
| PANTHER | 128 | 441 | 314 | 8.3E-152 | – | |
| PANTHER | 128 | 441 | 314 | 8.3E-152 | – | |
| SMART | 128 | 163 | 36 | 18.0 | ||
| CDD | 131 | 440 | 310 | 7.08586E-105 | ||
| SMART | 164 | 199 | 36 | 3.1E-9 | ||
| Pfam | 164 | 197 | 34 | 3.2E-7 | ||
| ProSiteProfiles | 164 | 199 | 36 | 12.07 | ||
| ProSiteProfiles | 203 | 239 | 37 | 6.751 | ||
| SMART | 203 | 239 | 37 | 7.0 | ||
| ProSiteProfiles | 240 | 275 | 36 | 6.751 | ||
| SMART | 240 | 275 | 36 | 0.1 | ||
| SMART | 276 | 311 | 36 | 0.059 | ||
| ProSiteProfiles | 276 | 311 | 36 | 7.474 | ||
| Pfam | 279 | 310 | 32 | 3.6E-5 | ||
| SMART | 312 | 347 | 36 | 16.0 | ||
| ProSiteProfiles | 312 | 347 | 36 | 7.731 | ||
| SMART | 348 | 383 | 36 | 0.004 | ||
| ProSiteProfiles | 348 | 383 | 36 | 8.617 | ||
| Pfam | 349 | 373 | 25 | 1.1E-5 | ||
| ProSiteProfiles | 384 | 421 | 38 | 9.154 | ||
| SMART | 386 | 421 | 36 | 1.0 | ||
| Coils | 451 | 451 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0359500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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