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LotjaGi1g1v0361500.1

Overview

Field Value
Gene ID LotjaGi1g1v0361500
Transcript ID LotjaGi1g1v0361500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Tetratricopeptide repeat protein 7A; TAIR: AT1G27460.1 no pollen germination related 1; Swiss-Prot: sp|Q9CB03|NPGR1_ARATH Protein NPGR1; TrEMBL-Plants: tr|I1JTR1|I1JTR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0361500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:83625991..83632676) extracted from Lotus japonicus Gifu genome v1.2.

AATGTGATTGGACGTCGGTGCATATCTATTAATCTCAAATATGTTTTGTTTATAGTACCTGTTCATAGAAATTACAGTGC AGTAATAAATTGACTACGCTTGACCGATCTAGCCTTTTAGGTGCATACTTTATTACTTGTTGATGAAGCCGTTTAGGTTT CACTTTCTTACTTCAAAAATGGTGATTGATTCAACCTTAACAGAATCCAATATTTCAACTCAACGCAGAAATTGAGACCA AGTGGCATTGCATTGCACTGCAATCTCGAGAATGAAACAGTTTTTAGATCTCTGAATCCCAATGCCAATCTTTCTACTGG TCCCTCTTCTCAAAAACCACAATCTGATTCTGAAAGCTACCTTTCATGGCGTAAAACCACTTTGCATCTTTGGAATCTGA GCCCATTCTGATCATTGTTTGTCTCGCCCTTTTCATCAATCACGGGGTTTCGTCATTTTCCTTGTGTTGATTGATTGCAG TTAACGTGTTTGTTAAAAGGTGTGAGCTGAGAACTGAAGTCATTGTTGTTGTGATTTTGGTTTCTGGAGGAGAAGATGTT GTGTGCTTGCTCCGGGGAGCAGTTCAAGTTAGAAGAGCCGCCGCCGCGGTCGCCGGAGTCCCTTGCAACCAGGGATTTCT CCGCCAGTGGGCTATCTTCCAGGACTGCAGATTGGGATTCCAAATTCAGTGAAACCCAAGTTGAAGAAGCTGAAACTACT CTCAAAGAAGCCCTTTCCTTGAACTATGAGGTTGCGACTCGCAATGCGCTTAGTTTGACATGAGTTTAGTTTTGTAATAA TGTATGTGCATTTCAATAAATGTGACAACTCTCCTTTTGTGAATGAATTTCAGGAAGCTAGGGCTTTGCTGGGGAGGCTG GAATACCAAAGGGGAAACTATGATGCTTCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCGAGGATGAT CAATGTAATTGCTGAAAGAACTAAGCAAAGAAAGCCACGATCGAAGGCAGACGTCGTGATTCTTCCGAATGTGATGTCAT TGCATTCTGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCGCTGGAGGAACTTGGACGATACGTTGGTCGG TACCTAATATTACATTTATATCTCTTTTTAGAGGAATTTCATATGCTTATATGCTGTTTGATTAAGTGCACATTTGTTAA ACTATCCTATTTTTGCATGTGGTATATTGGAAGTTTTGTACGAATTGGATCTTGAATGTTTCTCTATTTGAAATGCCATA TAAGAGCATATAAATTTTACTCTATTATGCGGATTTTATGTACCAGAGTTTTCGTGTTCAAGGGTGCTGATTCTAATAAC TCTATTGCTTTCTTAATCACCAGATGCTGCAAAGGAGTGCGGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATG GAATGCCTGAGGGTATTAGCGAAGATTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGGAGTTGCTTCCAAGCCTATGG ATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATACCGTCGTGCTCTGGTTAAGCCATGGAATTTGGAGCAACAAAG GTTGGCTGTTATTCAAAAAGATTTAGCTACAACCCTACTCTATGGTGGTGTTGAATTAAGCCTACCCTCTCGGTTCCAAG TGTGGGGTCAGAAAGCACCCAAGAGTAACATTGAAGAAGCTATACTTTTGCTATTAATAATCATGAGCAAGATGACAATG CAGGTAATAGAATGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTCACTGGGATGTTGGAGTTGTTGGC AGATCATGTAGAGCAAATCCTTCCAGGCACCTATAATCGAGTTGATAGATGGTACTTCCTTGCTCTGTGTTATAGTGCTG CAGGACACAACGAAACAGCATTGAACCTTTTGAGGAAGGCATGTAGTCGTTCTGAAGCAAAGCTTAGACCCCATTTTCAT TCGTTTTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTTGCCACGCTCATGAAGGCATTAACTTTTCACGTGAAGTTAT TGATCTAGCTAAGCACCGTAACAAGCATTTTTTGGGTCAAGGCCAGAAATTTCTAGGTGTTTGCTATGGAGCTGCAGCCA GAATTTCTGTACTGGATTGTGAAAGAAGTGTATTTCAAAGTGAGTCTTTGAACTTTCTAAACTGCGCTGCTGTAAGTGGA AATGGTGACCCGGAAGTTATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGACAATAT AATGATGTACTCAAACATGACTGTTGGAGGTTCAGGAAGAGGATGGCAGCTATTAGCACTCATCGTATCTGCACAGAAGC GACTTATGGATGCTGAAACTATAGTTGATTTTGCATTAGATGAGGCTGGGAGGAGGGATCAGCTAGAACTTCTACGATTG AAAGCAGTACTTCAAATTGCTCAGCAACAACCCAATCAAGCATTAGAGTCCTACAGAATCCTGCTAGCACTAATTCAAGC CAAAAAGGAGCTTTGGCTTCGGGATAAGGACTTTGATCAAGCAAAAGCATTCAGGCATGAGGTGTGTATTACTTTCAAGG GAACAACTCTCAATGTCCCTAGTATGGACTTATATTAAAGCTAATTGAAAAGAAAAATGGCCCTTGTTCACTGGAAACTA CAAAAAATAAGGATGTTATGTCTAGACTCTAGACTGGTTATTTAATTAAAACGAAAACCTCTAAAGTTTTTTAATATCTG GTAAAAGAAACTCTCCCGTCCTTCCCCTTTCCTAAAGTTATTTCAAAATCTCATTATCTCTTTCATATTAAATTTGAGAG TAGTTTAAAAAAAAATTAAATGTTTCATTGATATTGTAAAGTGACTTATATTTAGGAACAAAATAATTTCACAAAAAGTT ACTTATAAATAGGAATGGAGGGAGTGGAACTTTCATTCCGGGTGACCAAAGCTGATCCTATGCTTAGAGTGGAAGTTTGG GAATTAATGATCAGGGACAATATTTTCTTTTAGAAATATTGGTAGGATTACATTTATCTCCTAAATCTTGAGAATAATTT CTTCCTACTTTTTTCCACCCTCTTAGCAGATACTAACAGAAAGGAAGTTTGAAATGGAAGCCTGGACAGATCTGGCTACC ATTTATGCCGATATCGGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAGTTGATAGATTTTTTTTCTCCAAG AAGTTGGCACATTACAGGTAAAAGTCGGCTTGCCTAGGTTTATATTATTGAGCTACTTTTTTTTTTTCATCAAGTGTTTA ATCTAATTGTAAACTAATCTTAAATTCCACGGCTGTGCATAATTGCAGGGGTGTTGCTTGAATCTCAATCATTATACAAA GAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGCATCATTTCAAGTGCAAAATTGTT GCTGAAACTGGGGATGCAATCACTTCCAATTGCAAGAAGCTTTTTGATGAATGCTTTGCGGATAGAACCGGAAAACCATG ATGTGTGGTTCAACCTTGGATTGGTTTCAAAAAGCGAAGGTTCATTACAGCAAGCAGCAGATTACTTTCAAGCTGCATAT GAACTAAAGCTTTCCGCTCCAGTGCAAAAATTTGAGTAATTGAGAGTTTGGGAAGACGCCGAGAATGTTTATGGTCAAGG AAAAGTGAGCTTAAGAAAGGGTAGGATAGACAAAATGCCGACAGCTACTAAATAACATAATACTCATCCCACGGTTACTA TTGCTTGGCTTTTGTTCAAATTGTATAGCCAAATCCAGTCTTCTCACCTATAAAATATTGACTTACTTCATTGTCAAATA TTTAGCAGTTCTTAAGCATTTCTACTACCAAGGGGTTCATCTATTTAAACTCATTTAGGACAAAGAATTTCATTTCATGA CTCATTGTAAGAAGCTCATTTTTTGTTTGTTTGAATACAGCTTACAAGAGATGCTCAAAGTTGGGAGCAATTCTTGTTTG CTTTAAGAGTAATACCATTTATGATCGATCGTTCTCTTTTTAGTTAATCTGATGACATCAATTCCCCTGTTATATTCTAG CTAGCGAAAAATATTACTCAGTAATGTTGCAGTCTTCGACAAAGATACAATCAGTTGTTTCTTTTTTGTCAAAAGGTACA GTCAGTTTAAGTGATTGTTGATGTGGTTCAAATTTTTGCAGAAGGAAAATGAAGTTGCTTGAATATCAACAAAGGGGAAT AAAAACACCGAACTACATTCTCAACTTATCCTTGTTTCCTTTTTACATCACGAATTCTTTGTAATCAAACAGCATATTTC TTGGTCAGGTAAATAACAATTTTGACCTATAGTACAATTGCAATAAAGACCATTTGTTCATCATCTTCGGAACAAGGAAA GCTGGCAGTGCAGAGAACTTGACTGGACCTATACTTAGTACTGCAACACAACAAAGGAAAAACCAATGCAAAAGAAGGTA AGAATCTATATGATAACAGACAGTTCAATCTGTTACAAACATAATCTCAGAATTGGTTCTAATCCACTCAATCTAGAAAA GCAGTATAGTTAATCCAATTCAACAGGGTTGGGTTGATGTTAGATGCTTTTGATTTGTCTAGCCTAGAAGTAGATTTCTA GATTATAGTTTTGATCTAAGATAGAGGAATTTCTTGATTGACATGAACTGAATGAATCTAGCCAAATTTGTTTTATGAGA AAAAGATATATCTTTTTGTTACACTCCTAAGTCCTAACATGATCTCTGTTAATAGAAGTTACTTTGTTCATTTCTGCGAA TAAAGAAAATTCTTTGGCCAGCCTTCTACCGCTTAGTGCGCTGACCGCGGGGCGGGGGATTAGTCTCACGGCTGTTGGAT GTGGGGATACCTTAGTCAAGATAAAAAAAAACTGAACAAGAAACAAAAAGCTCAACCTACAATTTATCAGATAGATCAAT CACCTTACACGTAATAAACAATTGGCTCGGACAGACAAATTGCCTAACCTCAACCCATCTGCCTCTGCATCAACATATGA AAAAAGAAAATTCAACACTACAATAATTGTGTAGTCACATAATGGATATGGTCAATATTCATAATGGATATGATTGGATT CATTTGAAGTGGATGTTTGGATACATGTTAAGTCAAAATCAAGGTGGACAGCCACAAAACTAATGAAAATTGCTTTTGTC CACCATGATTTTAGCTAACCATGGTTTTACCAAAACATACATAAAGTTTGTTAGACAAATGGTAAAGGGAAACAAAATCA ACATATAAAAGGAAACTTTTTCTTTAAATTTCTCTGGAATTTTAAGATGATACATAAGCTGATCTAACCACAATACGAGT CAATACTTGCCAAAAATTAAGTGGCCTGTTGAATCGCTAAACTTTTACAAATTGTTCGCCATTGTTGGAGTTTTCAGGTT GCTTTCCCATATCTGGTTGCTTTGCCCCTCCTTGTTGTTCTTGCCTGCAATGACAATCAAATCATCACCTAAAAATTAGT CTATATATACCTACATTGCCACCCCCAAAAGAAGCCATTACAATAGCATTTTCCCCCTTTCCCCATGGCACCCATCCCAA CAATTTTCAATAGTAAAGCTTCATATACAAATTCATAATTTTGATGGGGTTTTGCATGCTTCTTCTTATGGATAAATTTC TCTTCCATAAAACATGTCATAACATGTGTGTATATATCTATGCACGGCTATGCATGTTAGTCGTAGGTTGCCTTGTTGCA TGAACAAACGTAACAAGATGGAAATATTAACGTATGATATTGAAGGATGAGAAGAATGCATAAAATTGAGAACAATTGAT CAATGTCCACGAGCATGATGATCAAGGTTCTAACATAAATATAACAACCCAATAAATGCATGAAACATTTGCAGGAGTGC AAGGGTTATCATCTAAGCACATAAACAAATTAAAAATTTCTATCCAATTGATTCTAAAGGCAAAATCAATTATAGGTAGA AATTTCTGCGTTTTCATAAATAATTGTCACAAAAGAGAAACATGCTAAATAATGATTATATGTTAAATGAACGTATAGAA ATGAAGATGAAGAAGAAGGAATGTACTTTTTCTGGGCGGCTTCAGCGGCTCTGGCGCGTGCTTCTTCAGAGGCCAATCTC TCTTCCTCCTTGGTCATACGCTTGTTGCCCCCATCGAAGCAACCAAAGCACAGCCCCATTTTTCTTTCTCTCCCTCTCTT CTCCCTCTCTCTTTTTCTCTTTCTCTTTCTCTTTCTTTTTTTCTTCTCTATCACCTGCTTGGCCTTTACGCCTCTAGCTA CAACCTGTATTTTCCTTCTTTTTTTAAAAATAAAACTGTCTTCCCCATTTTCGTTGGAGTTTATCTTCCCTAATTTCTAT TGTGGATGGGAATGATGACGGGTAACATGCTATATTAATATCAATATTAACAATTATTTAACAACAAAAAAAAGGCTACG TGAGTTACATGTTCTATGAAAATCCGTTGTGCCATTACGCGTAAAATCTGTGTCATGTTGCCCATTAGTTAGAGGTTTTA ATAAATTAACAGTACTTTGGTTTCCACAGAAAATCTATAAATAAAT 

CDS sequence (LotjaGi1g1v0361500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGTGTGCTTGCTCCGGGGAGCAGTTCAAGTTAGAAGAGCCGCCGCCGCGGTCGCCGGAGTCCCTTGCAACCAGGGA TTTCTCCGCCAGTGGGCTATCTTCCAGGACTGCAGATTGGGATTCCAAATTCAGTGAAACCCAAGTTGAAGAAGCTGAAA CTACTCTCAAAGAAGCCCTTTCCTTGAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGGCTGGAATACCAAAGGGGAAAC TATGATGCTTCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCGAGGATGATCAATGTAATTGCTGAAAG AACTAAGCAAAGAAAGCCACGATCGAAGGCAGACGTCGTGATTCTTCCGAATGTGATGTCATTGCATTCTGTAAGCCTGC TTCTTGAGGCAATTTTGCTTAAAGCATTATCGCTGGAGGAACTTGGACGATACGTTGATGCTGCAAAGGAGTGCGGAATA ATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTAGCGAAGATTGTAAGTTGCAAGAAATGTT CCATAGAGCATTGGAGTTGCTTCCAAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATACCGTCGTG CTCTGGTTAAGCCATGGAATTTGGAGCAACAAAGGTTGGCTGTTATTCAAAAAGATTTAGCTACAACCCTACTCTATGGT GGTGTTGAATTAAGCCTACCCTCTCGGTTCCAAGTGTGGGGTCAGAAAGCACCCAAGAGTAACATTGAAGAAGCTATACT TTTGCTATTAATAATCATGAGCAAGATGACAATGCAGGTAATAGAATGGGATGCTGAAATAATGGATCATCTTACATTTG CACTTTCAGTCACTGGGATGTTGGAGTTGTTGGCAGATCATGTAGAGCAAATCCTTCCAGGCACCTATAATCGAGTTGAT AGATGGTACTTCCTTGCTCTGTGTTATAGTGCTGCAGGACACAACGAAACAGCATTGAACCTTTTGAGGAAGGCATGTAG TCGTTCTGAAGCAAAGCTTAGACCCCATTTTCATTCGTTTTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTTGCCACG CTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCGTAACAAGCATTTTTTGGGTCAAGGCCAG AAATTTCTAGGTGTTTGCTATGGAGCTGCAGCCAGAATTTCTGTACTGGATTGTGAAAGAAGTGTATTTCAAAGTGAGTC TTTGAACTTTCTAAACTGCGCTGCTGTAAGTGGAAATGGTGACCCGGAAGTTATATTCAGCCTTGGACTGGAAAATGCAA TTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTACTCAAACATGACTGTTGGAGGTTCAGGAAGAGGATGG CAGCTATTAGCACTCATCGTATCTGCACAGAAGCGACTTATGGATGCTGAAACTATAGTTGATTTTGCATTAGATGAGGC TGGGAGGAGGGATCAGCTAGAACTTCTACGATTGAAAGCAGTACTTCAAATTGCTCAGCAACAACCCAATCAAGCATTAG AGTCCTACAGAATCCTGCTAGCACTAATTCAAGCCAAAAAGGAGCTTTGGCTTCGGGATAAGGACTTTGATCAAGCAAAA GCATTCAGGCATGAGATACTAACAGAAAGGAAGTTTGAAATGGAAGCCTGGACAGATCTGGCTACCATTTATGCCGATAT CGGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAGTTGATAGATTTTTTTTCTCCAAGAAGTTGGCACATTA CAGGGGTGTTGCTTGAATCTCAATCATTATACAAAGAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGAT TACATTCCCAGCATCATTTCAAGTGCAAAATTGTTGCTGAAACTGGGGATGCAATCACTTCCAATTGCAAGAAGCTTTTT GATGAATGCTTTGCGGATAGAACCGGAAAACCATGATGTGTGGTTCAACCTTGGATTGGTTTCAAAAAGCGAAGGTTCAT TACAGCAAGCAGCAGATTACTTTCAAGCTGCATATGAACTAAAGCTTTCCGCTCCAGTGCAAAAATTTGAGTAA 

Protein sequence (LotjaGi1g1v0361500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCACSGEQFKLEEPPPRSPESLATRDFSASGLSSRTADWDSKFSETQVEEAETTLKEALSLNYEEARALLGRLEYQRGN YDASLQVFQGIDIKGLTPRMINVIAERTKQRKPRSKADVVILPNVMSLHSVSLLLEAILLKALSLEELGRYVDAAKECGI ILDTVESALPNGMPEGISEDCKLQEMFHRALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEQQRLAVIQKDLATTLLYG GVELSLPSRFQVWGQKAPKSNIEEAILLLLIIMSKMTMQVIEWDAEIMDHLTFALSVTGMLELLADHVEQILPGTYNRVD RWYFLALCYSAAGHNETALNLLRKACSRSEAKLRPHFHSFLLGAKLCSQDPCHAHEGINFSREVIDLAKHRNKHFLGQGQ KFLGVCYGAAARISVLDCERSVFQSESLNFLNCAAVSGNGDPEVIFSLGLENAIQRNLDAAYDNIMMYSNMTVGGSGRGW QLLALIVSAQKRLMDAETIVDFALDEAGRRDQLELLRLKAVLQIAQQQPNQALESYRILLALIQAKKELWLRDKDFDQAK AFRHEILTERKFEMEAWTDLATIYADIGSFLDAKACVDKAQLIDFFSPRSWHITGVLLESQSLYKEAFVSFSVSLSIEPD YIPSIISSAKLLLKLGMQSLPIARSFLMNALRIEPENHDVWFNLGLVSKSEGSLQQAADYFQAAYELKLSAPVQKFE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 716 716 0.0
PANTHER 1 716 716 0.0
MobiDBLite 8 36 29 -
SUPERFAMILY 46 344 299 4.68E-6
Coils 57 77 21 -
SUPERFAMILY 200 603 404 1.05E-8
SMART 319 352 34 20.0
ProSiteProfiles 319 352 34 6.136
Gene3D 424 713 290 7.5E-23
SMART 513 546 34 150.0
SUPERFAMILY 551 708 158 3.19E-16
ProSiteProfiles 574 711 138 19.602
ProSiteProfiles 574 607 34 5.163
SMART 574 607 34 180.0
SMART 608 641 34 100.0
ProSiteProfiles 608 641 34 7.552
Pfam 670 706 37 0.016
SMART 678 711 34 7.6
ProSiteProfiles 678 711 34 8.703

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0361500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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