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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0361500 |
| Transcript ID | LotjaGi1g1v0361500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT1G27460.1 no pollen germination related 1; Swiss-Prot: sp|Q9CB03|NPGR1_ARATH Protein NPGR1; TrEMBL-Plants: tr|I1JTR1|I1JTR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0361500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:83626546..83629709) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGTGTGCTTGCTCCGGGGAGCAGTTCAAGTTAGAAGAGCCGCCGCCGCGGTCGCCGGAGTCCCTTGCAACCAGGGA TTTCTCCGCCAGTGGGCTATCTTCCAGGACTGCAGATTGGGATTCCAAATTCAGTGAAACCCAAGTTGAAGAAGCTGAAA CTACTCTCAAAGAAGCCCTTTCCTTGAACTATGAGGTTGCGACTCGCAATGCGCTTAGTTTGACATGAGTTTAGTTTTGT AATAATGTATGTGCATTTCAATAAATGTGACAACTCTCCTTTTGTGAATGAATTTCAGGAAGCTAGGGCTTTGCTGGGGA GGCTGGAATACCAAAGGGGAAACTATGATGCTTCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCGAGG ATGATCAATGTAATTGCTGAAAGAACTAAGCAAAGAAAGCCACGATCGAAGGCAGACGTCGTGATTCTTCCGAATGTGAT GTCATTGCATTCTGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCGCTGGAGGAACTTGGACGATACGTTG GTCGGTACCTAATATTACATTTATATCTCTTTTTAGAGGAATTTCATATGCTTATATGCTGTTTGATTAAGTGCACATTT GTTAAACTATCCTATTTTTGCATGTGGTATATTGGAAGTTTTGTACGAATTGGATCTTGAATGTTTCTCTATTTGAAATG CCATATAAGAGCATATAAATTTTACTCTATTATGCGGATTTTATGTACCAGAGTTTTCGTGTTCAAGGGTGCTGATTCTA ATAACTCTATTGCTTTCTTAATCACCAGATGCTGCAAAGGAGTGCGGAATAATTCTGGATACGGTTGAATCTGCCCTTCC TAATGGAATGCCTGAGGGTATTAGCGAAGATTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGGAGTTGCTTCCAAGCC TATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATACCGTCGTGCTCTGGTTAAGCCATGGAATTTGGAGCAA CAAAGGTTGGCTGTTATTCAAAAAGATTTAGCTACAACCCTACTCTATGGTGGTGTTGAATTAAGCCTACCCTCTCGGTT CCAAGTGTGGGGTCAGAAAGCACCCAAGAGTAACATTGAAGAAGCTATACTTTTGCTATTAATAATCATGAGCAAGATGA CAATGCAGGTAATAGAATGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTCACTGGGATGTTGGAGTTG TTGGCAGATCATGTAGAGCAAATCCTTCCAGGCACCTATAATCGAGTTGATAGATGGTACTTCCTTGCTCTGTGTTATAG TGCTGCAGGACACAACGAAACAGCATTGAACCTTTTGAGGAAGGCATGTAGTCGTTCTGAAGCAAAGCTTAGACCCCATT TTCATTCGTTTTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTTGCCACGCTCATGAAGGCATTAACTTTTCACGTGAA GTTATTGATCTAGCTAAGCACCGTAACAAGCATTTTTTGGGTCAAGGCCAGAAATTTCTAGGTGTTTGCTATGGAGCTGC AGCCAGAATTTCTGTACTGGATTGTGAAAGAAGTGTATTTCAAAGTGAGTCTTTGAACTTTCTAAACTGCGCTGCTGTAA GTGGAAATGGTGACCCGGAAGTTATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGAC AATATAATGATGTACTCAAACATGACTGTTGGAGGTTCAGGAAGAGGATGGCAGCTATTAGCACTCATCGTATCTGCACA GAAGCGACTTATGGATGCTGAAACTATAGTTGATTTTGCATTAGATGAGGCTGGGAGGAGGGATCAGCTAGAACTTCTAC GATTGAAAGCAGTACTTCAAATTGCTCAGCAACAACCCAATCAAGCATTAGAGTCCTACAGAATCCTGCTAGCACTAATT CAAGCCAAAAAGGAGCTTTGGCTTCGGGATAAGGACTTTGATCAAGCAAAAGCATTCAGGCATGAGGTGTGTATTACTTT CAAGGGAACAACTCTCAATGTCCCTAGTATGGACTTATATTAAAGCTAATTGAAAAGAAAAATGGCCCTTGTTCACTGGA AACTACAAAAAATAAGGATGTTATGTCTAGACTCTAGACTGGTTATTTAATTAAAACGAAAACCTCTAAAGTTTTTTAAT ATCTGGTAAAAGAAACTCTCCCGTCCTTCCCCTTTCCTAAAGTTATTTCAAAATCTCATTATCTCTTTCATATTAAATTT GAGAGTAGTTTAAAAAAAAATTAAATGTTTCATTGATATTGTAAAGTGACTTATATTTAGGAACAAAATAATTTCACAAA AAGTTACTTATAAATAGGAATGGAGGGAGTGGAACTTTCATTCCGGGTGACCAAAGCTGATCCTATGCTTAGAGTGGAAG TTTGGGAATTAATGATCAGGGACAATATTTTCTTTTAGAAATATTGGTAGGATTACATTTATCTCCTAAATCTTGAGAAT AATTTCTTCCTACTTTTTTCCACCCTCTTAGCAGATACTAACAGAAAGGAAGTTTGAAATGGAAGCCTGGACAGATCTGG CTACCATTTATGCCGATATCGGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAGTTGATAGATTTTTTTTCT CCAAGAAGTTGGCACATTACAGGTAAAAGTCGGCTTGCCTAGGTTTATATTATTGAGCTACTTTTTTTTTTTCATCAAGT GTTTAATCTAATTGTAAACTAATCTTAAATTCCACGGCTGTGCATAATTGCAGGGGTGTTGCTTGAATCTCAATCATTAT ACAAAGAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGCATCATTTCAAGTGCAAAA TTGTTGCTGAAACTGGGGATGCAATCACTTCCAATTGCAAGAAGCTTTTTGATGAATGCTTTGCGGATAGAACCGGAAAA CCATGATGTGTGGTTCAACCTTGGATTGGTTTCAAAAAGCGAAGGTTCATTACAGCAAGCAGCAGATTACTTTCAAGCTG CATATGAACTAAAGCTTTCCGCTCCAGTGCAAAAATTTGAGTAA
CDS sequence (LotjaGi1g1v0361500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGTGCTTGCTCCGGGGAGCAGTTCAAGTTAGAAGAGCCGCCGCCGCGGTCGCCGGAGTCCCTTGCAACCAGGGA TTTCTCCGCCAGTGGGCTATCTTCCAGGACTGCAGATTGGGATTCCAAATTCAGTGAAACCCAAGTTGAAGAAGCTGAAA CTACTCTCAAAGAAGCCCTTTCCTTGAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGGCTGGAATACCAAAGGGGAAAC TATGATGCTTCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCGAGGATGATCAATGTAATTGCTGAAAG AACTAAGCAAAGAAAGCCACGATCGAAGGCAGACGTCGTGATTCTTCCGAATGTGATGTCATTGCATTCTGTAAGCCTGC TTCTTGAGGCAATTTTGCTTAAAGCATTATCGCTGGAGGAACTTGGACGATACGTTGATGCTGCAAAGGAGTGCGGAATA ATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTAGCGAAGATTGTAAGTTGCAAGAAATGTT CCATAGAGCATTGGAGTTGCTTCCAAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATACCGTCGTG CTCTGGTTAAGCCATGGAATTTGGAGCAACAAAGGTTGGCTGTTATTCAAAAAGATTTAGCTACAACCCTACTCTATGGT GGTGTTGAATTAAGCCTACCCTCTCGGTTCCAAGTGTGGGGTCAGAAAGCACCCAAGAGTAACATTGAAGAAGCTATACT TTTGCTATTAATAATCATGAGCAAGATGACAATGCAGGTAATAGAATGGGATGCTGAAATAATGGATCATCTTACATTTG CACTTTCAGTCACTGGGATGTTGGAGTTGTTGGCAGATCATGTAGAGCAAATCCTTCCAGGCACCTATAATCGAGTTGAT AGATGGTACTTCCTTGCTCTGTGTTATAGTGCTGCAGGACACAACGAAACAGCATTGAACCTTTTGAGGAAGGCATGTAG TCGTTCTGAAGCAAAGCTTAGACCCCATTTTCATTCGTTTTTGTTAGGAGCAAAACTCTGTTCTCAGGATCCTTGCCACG CTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCGTAACAAGCATTTTTTGGGTCAAGGCCAG AAATTTCTAGGTGTTTGCTATGGAGCTGCAGCCAGAATTTCTGTACTGGATTGTGAAAGAAGTGTATTTCAAAGTGAGTC TTTGAACTTTCTAAACTGCGCTGCTGTAAGTGGAAATGGTGACCCGGAAGTTATATTCAGCCTTGGACTGGAAAATGCAA TTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTACTCAAACATGACTGTTGGAGGTTCAGGAAGAGGATGG CAGCTATTAGCACTCATCGTATCTGCACAGAAGCGACTTATGGATGCTGAAACTATAGTTGATTTTGCATTAGATGAGGC TGGGAGGAGGGATCAGCTAGAACTTCTACGATTGAAAGCAGTACTTCAAATTGCTCAGCAACAACCCAATCAAGCATTAG AGTCCTACAGAATCCTGCTAGCACTAATTCAAGCCAAAAAGGAGCTTTGGCTTCGGGATAAGGACTTTGATCAACAGATA CTAACAGAAAGGAAGTTTGAAATGGAAGCCTGGACAGATCTGGCTACCATTTATGCCGATATCGGTTCCTTTCTTGATGC AAAAGCTTGTGTTGACAAAGCCCAGTTGATAGATTTTTTTTCTCCAAGAAGTTGGCACATTACAGGGGTGTTGCTTGAAT CTCAATCATTATACAAAGAGGCCTTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGCATCATT TCAAGTGCAAAATTGTTGCTGAAACTGGGGATGCAATCACTTCCAATTGCAAGAAGCTTTTTGATGAATGCTTTGCGGAT AGAACCGGAAAACCATGATGTGTGGTTCAACCTTGGATTGGTTTCAAAAAGCGAAGGTTCATTACAGCAAGCAGCAGATT ACTTTCAAGCTGCATATGAACTAAAGCTTTCCGCTCCAGTGCAAAAATTTGAGTAA
Protein sequence (LotjaGi1g1v0361500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCACSGEQFKLEEPPPRSPESLATRDFSASGLSSRTADWDSKFSETQVEEAETTLKEALSLNYEEARALLGRLEYQRGN YDASLQVFQGIDIKGLTPRMINVIAERTKQRKPRSKADVVILPNVMSLHSVSLLLEAILLKALSLEELGRYVDAAKECGI ILDTVESALPNGMPEGISEDCKLQEMFHRALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEQQRLAVIQKDLATTLLYG GVELSLPSRFQVWGQKAPKSNIEEAILLLLIIMSKMTMQVIEWDAEIMDHLTFALSVTGMLELLADHVEQILPGTYNRVD RWYFLALCYSAAGHNETALNLLRKACSRSEAKLRPHFHSFLLGAKLCSQDPCHAHEGINFSREVIDLAKHRNKHFLGQGQ KFLGVCYGAAARISVLDCERSVFQSESLNFLNCAAVSGNGDPEVIFSLGLENAIQRNLDAAYDNIMMYSNMTVGGSGRGW QLLALIVSAQKRLMDAETIVDFALDEAGRRDQLELLRLKAVLQIAQQQPNQALESYRILLALIQAKKELWLRDKDFDQQI LTERKFEMEAWTDLATIYADIGSFLDAKACVDKAQLIDFFSPRSWHITGVLLESQSLYKEAFVSFSVSLSIEPDYIPSII SSAKLLLKLGMQSLPIARSFLMNALRIEPENHDVWFNLGLVSKSEGSLQQAADYFQAAYELKLSAPVQKFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 710 | 710 | 0.0 | – | |
| PANTHER | 1 | 710 | 710 | 0.0 | ||
| MobiDBLite | 8 | 36 | 29 | - | – | |
| SUPERFAMILY | 46 | 344 | 299 | 4.46E-6 | ||
| Coils | 57 | 77 | 21 | - | – | |
| SUPERFAMILY | 137 | 542 | 406 | 7.59E-5 | ||
| SMART | 319 | 352 | 34 | 20.0 | ||
| ProSiteProfiles | 319 | 352 | 34 | 6.136 | ||
| Gene3D | 424 | 707 | 284 | 3.1E-21 | ||
| SMART | 513 | 546 | 34 | 150.0 | ||
| SUPERFAMILY | 559 | 702 | 144 | 2.16E-16 | ||
| ProSiteProfiles | 568 | 705 | 138 | 19.602 | ||
| SMART | 568 | 601 | 34 | 180.0 | ||
| ProSiteProfiles | 568 | 601 | 34 | 5.163 | ||
| SMART | 602 | 635 | 34 | 100.0 | ||
| ProSiteProfiles | 602 | 635 | 34 | 7.552 | ||
| Pfam | 664 | 700 | 37 | 0.016 | – | |
| SMART | 672 | 705 | 34 | 7.6 | ||
| ProSiteProfiles | 672 | 705 | 34 | 8.703 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0361500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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