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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366300 |
| Transcript ID | LotjaGi1g1v0366300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Far upstream element-binding protein; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2; TrEMBL-Plants: tr|A0A151TTJ8|A0A151TTJ8_CAJCA Far upstream element-binding protein 1; Found in the gene: LotjaGi1g1v0366300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84409233..84415724) extracted from Lotus japonicus Gifu genome v1.2.
CACTAGTATAAAAGGGACAACATAATATATTCCAGTCTCTCTCTCTCTCTCTATCCCTCTCACTCTGTCTCTCTAGGGTT TGTTCTCGATGGCAGAGGAAGCGCACTATGCAGCACCGGCATCGGAATCCCTCAAACGGAAGTACGATGAGCCACCCACC CACCGCCCCACCGGCTTCTCCTCCCCTCATTCCACCGTCTCCGACATCGAGCTCGCCAAGCAGAAAGCTCAAGAAGTCGC TGCTCGTCTCTTCAGCGGTGCTCCTCCTCCCCCAATCGACCTCAAACGCCCTAAACCTGATAACGCTGCTCCTCCTTCCT CCTTCGATTCCATCGGTAACTATCCATCTAACGCTTTTGCTTTGCACAATTGTAGCACCAAAACCTTGTAGTTATTTATT TTTTTTTTTCTGATTTGGGTGAATTTGACCTAGATTTGAAGGCTCAATACCCTGTGTCTACTTATCAAACTTCGAGCAAG AAGATAGATATACCCAGTGGTAGAGTTGGTGTGATTATTGGTAAAGGTGGGGAAACCATCAAGTCTCTTCAGTTGCGGTC TGGTGCCAAAATCCAAGTTACCCGTGATATGGATGCTGACCCCAATTCCCCGAATAGGTTGGTTGAGCTTATGGGTAGTC CTGAGGCTATTGCCGATGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGTAACTAACTGATGGCTAGTTTTAATTAGA TGAAGTGGTTCCTTATAAATGTGGTTTAATGATGTGAAATAGTTGTAGTTTGTTTGTGAAGCATCAATGTAATGAGCTGT TCTTTTTGTACCAGGCTGAGTCTGGGGGTTCTGGCATGATTGGTCGACGGCTGACTGGACAATCTGGGTCGGCTGATGAG TTTTCGATGCAAATCCCGAATAATAAGGTGTGCAGAGGGAGACATGTTTAGCATATGCATTACACAATGTTTCAAAGGGT TTGATTTCGTTTATTCTTGTTTGGTTGATATGGTTTGCTGTGTGCATCTTCAGGTTGGCCTTATAATTGGCAAGGGAGGA GAAACTATAAAGAGTATGCAAGCTGAGTCTGGAGCACGAATTCAGGTTTTCACTTTTTAAGCAAAACATTCCTGGTGCTT GTCTTTGTTGTGCATTAAATCAGTGTTGCCAAATAGTGGTCATAGCGGTGCTATAGCTTTAGCTAATATTAAAAATTGGC TGCAGTAACAGCTGGCTCTCAAGAAATGGAGTTGGAAACCCTGTTTACCATCACTTATTCATAAATATTGTATATTTTTT GTCCAGGTGATACCTTTGCATCTTCCCCCAGGTGACCCATCAACAGAAAGAACATTAAAAATTGATGGTTCTCCTGAGCA AATTGAGTCAGCAAAGCAATTGGTTAATCAAATCATCAATGGCGAGGTAAGCTAAGGACACAACTTTTTCATTTGTTGAT TTTTGTTATATAATGTTTTGCTTGCCAATTTGCCATGTGGTGCTGGGTTTGGTTTACGTTTTAAGTTTTGGATTAAACTG GGTGATTTTATGTCCTTGGTTTATGTGGCTGGTATATGGATACTGTGTCGTTCGCCTATAATTGCCTATTGGGCATTTGC TTAATTATTTATGCTATGAAACATAAATTAGACCTGGTGGATTCCTTGAACATGTTATATGTCATTATCTCCCTCCCAAT TTTTTCAACCTTTACTATTTGTTCACTTGCTGTGGCCGAGAAATCAATTTTAAATTTAGTAATATGAGAGAGTTATAGCT ATATTGACATATATGCTTTTTGTTCTGTCCATATTTGTTAATTTCTCATTCATGCTGATCATGTTGCATCATCTCATGAC TATTGTTGGGAGACTTCTATTATGTTTTGCATGCATTGATGTTTGGGGCTGTGGGCTGAAAAGAGTTAGCTGTAAGGAAA TTGTGTCTTTTTCATAGCCTAAGATATTGCCGTCTCTATTAAGTGGTATTATATATGATACATTTATATCGTATGTTCTT CTCAGAAGTGGAAGAGCACATAGTTTTTTTATCATTGTGTAAGCTCAAAACTGTGCTATATATTTAATGCGTAAAAATAA AAGATACACTAAGTTGATAATGGACATTATGTTGCTCCTGCCTGAGATCTCTACAGCGTAGCTGCATCAGCTCATCAAGT GGAAACATGGTTACGGGGACTAACCATTGCAGTAGCTATCATTTATTAACTATTTATCTAACTTGTCCTACCTTGCAACT GTATCTGTAGTTCACTCTAGGGGTGAGCAAAACAACCGGCCCGACCCAAAACCGACGAAACCGAACAAAAAAAACGCTAT CAGTCGGGTCAGGTTGGTCATTCGGGTAAGGAAAAGCACTAAAATAGTTTGGGACGGGTGAATTCGGTCGGGTGCGGGTT AGGAATTTAAAACCCATCGGTACCCGACCCCACCCGACATTATCTTTCTGCCCAAAATTTCCTCGATCTGTGCACTTTCA AACTTTGAATATATATTTAATTAAACTTTTGTCATTTAGCTCTGTCACCTAATACTAGTAGCACAGGAGGAACACAACTA CTATTTCCAATCCATCACGCAATGTCTACTTTTTTATCTTTTAATTAATGTTAAACTTTAAAGTGAAAGGAGAACAACTA AAGTTACTGAAGCATAAATTGGTGGTGAGGAACATCCATACTTGAAACTTCCAAAGAAATATCCTAAACTTGCAGGTCTA AGCATCACCATTGATGCACCACGGTGGCTCATAATCTCCCAAATCCTAAACCTGTAGGAACATTTAGTTCTGTTATTTTG CATGCTCATAATCTCCATGACTCCATCTGATCATTTCCAGAAAGGGTAAAAGTATCCCACGGTGGCTTCCTTCCATCTTC ATCTACTTCACCTTCAACCTTCCATTACACCAGCTTCTTCCTTCATATCAACAACTCTTCCCCTCCGCACTCTCGTTTCT CTCATTCTCTCAAGCCTCCCTTTTACATTTCTTCTCCTGCATCTTACAACTTACAAGTCGTCTCACCGTTTCTCTCTTGA ATCGAAGGTTGTCTCCATGCCCCTCCTCTGTTTTTTTTTTTTCTGGTTAACCACCCGCCCCAACCCACCCGAACCGCCCG ATAACCCGTGCCACCCGAACCCGACGTAACCGATCAATCTCACGGTCGGAATCGGTTCTGAAAAATTGAGATTTTCACCC GTTCAAACCCGCCACTGTTCACCCAAACCCGAACCGACCCACCCGATGCTCACCCCTAGTTCACTCTGTAATTAGATAAT CTTGGTCACTATCTCCTTTTTACATATCCTTAATTTAGGGATATTGGTGGGAATATTTATTTGAGAATTGTATAGTTCAG TTTTGTTGTCTAAGATAACAAGCTCTTGCAAGGATGCCTTGTGCTCTGGTTTCCTTCTATTTTTTTGTGGTTTAGGTTCT TGGGGCCGTGAAGGCTACTGTGTTTATGCCATTATTTTTGGTCCAAGTGGATACTCATTGGGATTATATCCTTTTGAACA ATTGGAATATGCTTTTAATTGTGTATCCTATGACTGATCTTGTTATTGGGACAATTGTAGGGTTATAGTGTCTATTGGAC AATTGGTGACACCAACATGAATCCTGTTGTTGGTGTTCCCTCAGCATGCCCTGGTATGGTTCTAAGTCTCAGTTTTGATA ATTATTATCAAGGGCAGTAAGTCTCCTAATGTGCTGGACTCTATAAAGTGTCATCATTAGTTTGAATTTTAATTGCATTG AACTCCTTTTTCAACTGTACCAAAAGAACTTCCATATACTTCAAATATCATTTTATTATCCTTGGGTCTTATGCTAGACT AGTGTTTGGCAAAGTAACATGAAGTTTACCTTTGTAAAGCACTTTTTTTTTTCCTTTCATTTTTATCATTTTTTTAATCT TTTAGTTATTTCCACTAACTGGGTAGTTATATTGTTCAAGCTGGCTTTTATGATCTTTGTCAGTTGGTTCTGATGTGTTT AATGTGTTTTAACAATTCATGAGGGTCATATTCCCTTTCCTATATAACTATTAGCTCACACTCACTTCTACCTATTTATC ATCAAGGTGCTTTACTGCTTTTCACCTTTTTGTCTAATTCTTCTGCCGTATTTACTGTTATTTTCCATGAAACTTAAGCT GCACAAACTAAACCTGTTTCTACACCATTAACCCCTACTTCAAATTCCCTTCCAATTTAAATGGTGGTCATTTTATTTTC TTTAATTTGATAATCCTTTAAGGTTGACATTATTCGGTTGAGGTAATGTTGAGATTATTTCTTCTATGTATTTGGGGCAA AGAGTAGTGGTCTTTGCAGCGTGTATAGTTGGATTTATGTTTGCTCTAATTATACAGTCTACGATTTATCTGTTGTCGAG ACACTGATCTCGTTGATTTAATATGACTGAATTATAATGTAACAACTAGAATGAAGTCCTGCTTATTCTAATTACTATAT GGTGGGTTGCCTTTTTGAGGCGATAAAGATTGTATGTTTTGTCTGCTTCTATGGTTTGTGCTTCCTTTTGTACCCATTCA TTTCGAATAGGGAAAGGGTGTGCTTCTGCTGGAGTAACTCAATTTATCACGAACCAGTGCGGTATGTAGGTATCACATCC CTTTCTGATCCAGTATGAAATCTTTTCATGCAAGATATATATACCCTTTAATCCTTTATCTTTTATTCTTTACATGATAT TTATTTATGCAACTTTATATGTGTGTGCATCACTTGTATGTCATTGATCCTTGGATGAGTTCACTTTTCTGATTTGTGAT TACAATTTCTCTTTCTGCAGAACCGTCCCAGAAATTCAGGTGGTTATTCTCAGCAGGGTTACCAATCCCGACCACCATCT AGCTGGGCTCCCCCTGCTCCTCCTATGCAGCAACCTGGTTATGGCTATATGCAGCCTGGAGCATACTCTGGTCAAGCACC CCAATACAACATGCCTCAGGCCCAATACCCTGGCTATCCTCCCCAGCAAGCTGGCGGATATTCCACCAATTGGGACCAGT CCACCGCTCCACCTAACCAGCCGACAGCTGGTGGCTATGATTACTACAGTCAACAGCCACAGCAGCAGCAAAATCCTGGG GGTTCTGCAGCTTCTGCTGATGGGTCCACATACAATTACAGTCAACCACCTTCCTCTGGTTATAACCATCCAGGACAAGG TTATGGTCAGGACGGCTATAGTGCTTATAATGCGCCACCACAATCGGGGTACGGTCAGCCGCCAACATATGACCAGCAGC AAGGTTATGGCTCTGCTCCCAGCTATGGTAGTAGTAACCCAGCACAAGAGGGCAACACTTCCAGCTATGGAGCGCAAGGA GATTCATCCCAAGCTCCATCTGTTCAACCCTCGACTGCTGCGGCGCAGGGTTACGCTACCAACCAACAACCAAACTCCAC CAGTCAGCAAGGTTATGGAGCCCCACCCCCAACCTCCCAAGCAGCTTATGGCAATCAACAACAGTCTGGTTATGGTTATG GACCCCCTCAACCTGTGAAGCCAAGTGGCACTCCACCTGTTTATGGACAATCACAGTCGCCCAGCACAGCAGGAGGCTAT GGTCAGTCAGCATATCCTCCTGCACAACCCTCACCTGCCGGGTATGCTCAACCAGACCAAAAAGCGCCCGCATCTGGTTA TGGTGTTGCAGCGCAACCAGGGTATGGTCCTCAATCATATGGTGCTCCTCAGGGTAGTTATGGTCAGGCACCGCCATCAT ACGGCAACAGTTCTTATGGTGCTGGTTATGCTCAGACACCTGCTTATGCTAGTGATGGTACTAATGGAGCACCTGCACAG GCGGCGGCAGCAGCTCAACAGGGTGGTGTTGCTAAAGCTTCACCACAGAGTTGATATGTATTGGTTATTTTTTACCTTGA ACTGTAATGGTTTTATTGTGTTTGTCTGTTTTTTATTGTGGTAATGACGTTTATTTAGGCATTGCAGTATTTAGATGGAG GCATTGATGGATTGAGAATTCTAATTCTCAAATATCTTATACGGCTCACATTTTGTACTTATCTAATGTTTTGTTCTGAC GATTACTTATTGGATGTTGGACTAGAATATTTTTTGCGAATTATATCCTGTGTAGTCTGGTATCCATGTTTATTTAGGGT AATATCGGTTTATGAGTATGCAATGCTCAAATTTGAAACTTGGTTTTCTTGTGAAAATAACATTTGAATCTAGCCAGTTA AAATTCTCAGTGATTATTTTGTTTTAGCTGCTATGTCTTAGTTTTCAAATTGGATTATGGATAAAGTTAAACGAGAAAGG AAACTTATGGATCTATGCGCTTTGCCTACAATAGTGTTTATTTTAATTCTGGGAATCTAGGGGCTGGCCCTAACCTGCTT TACATGTGGATTTTGTTGTAAGTATAATCTACTTATTTTTTGGTCTAAAGACAATATGTAAATAGCTTTTTCATATATAT TTTTTACAAGCA
CDS sequence (LotjaGi1g1v0366300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGAAGCGCACTATGCAGCACCGGCATCGGAATCCCTCAAACGGAAGTACGATGAGCCACCCACCCACCGCCC CACCGGCTTCTCCTCCCCTCATTCCACCGTCTCCGACATCGAGCTCGCCAAGCAGAAAGCTCAAGAAGTCGCTGCTCGTC TCTTCAGCGGTGCTCCTCCTCCCCCAATCGACCTCAAACGCCCTAAACCTGATAACGCTGCTCCTCCTTCCTCCTTCGAT TCCATCGATTTGAAGGCTCAATACCCTGTGTCTACTTATCAAACTTCGAGCAAGAAGATAGATATACCCAGTGGTAGAGT TGGTGTGATTATTGGTAAAGGTGGGGAAACCATCAAGTCTCTTCAGTTGCGGTCTGGTGCCAAAATCCAAGTTACCCGTG ATATGGATGCTGACCCCAATTCCCCGAATAGGTTGGTTGAGCTTATGGGTAGTCCTGAGGCTATTGCCGATGCTGAGAAA CTCATCAATGAAGTTCTTGCTGAGGCTGAGTCTGGGGGTTCTGGCATGATTGGTCGACGGCTGACTGGACAATCTGGGTC GGCTGATGAGTTTTCGATGCAAATCCCGAATAATAAGGTTGGCCTTATAATTGGCAAGGGAGGAGAAACTATAAAGAGTA TGCAAGCTGAGTCTGGAGCACGAATTCAGGTGATACCTTTGCATCTTCCCCCAGGTGACCCATCAACAGAAAGAACATTA AAAATTGATGGTTCTCCTGAGCAAATTGAGTCAGCAAAGCAATTGGTTAATCAAATCATCAATGGCGAGAACCGTCCCAG AAATTCAGGTGGTTATTCTCAGCAGGGTTACCAATCCCGACCACCATCTAGCTGGGCTCCCCCTGCTCCTCCTATGCAGC AACCTGGTTATGGCTATATGCAGCCTGGAGCATACTCTGGTCAAGCACCCCAATACAACATGCCTCAGGCCCAATACCCT GGCTATCCTCCCCAGCAAGCTGGCGGATATTCCACCAATTGGGACCAGTCCACCGCTCCACCTAACCAGCCGACAGCTGG TGGCTATGATTACTACAGTCAACAGCCACAGCAGCAGCAAAATCCTGGGGGTTCTGCAGCTTCTGCTGATGGGTCCACAT ACAATTACAGTCAACCACCTTCCTCTGGTTATAACCATCCAGGACAAGGTTATGGTCAGGACGGCTATAGTGCTTATAAT GCGCCACCACAATCGGGGTACGGTCAGCCGCCAACATATGACCAGCAGCAAGGTTATGGCTCTGCTCCCAGCTATGGTAG TAGTAACCCAGCACAAGAGGGCAACACTTCCAGCTATGGAGCGCAAGGAGATTCATCCCAAGCTCCATCTGTTCAACCCT CGACTGCTGCGGCGCAGGGTTACGCTACCAACCAACAACCAAACTCCACCAGTCAGCAAGGTTATGGAGCCCCACCCCCA ACCTCCCAAGCAGCTTATGGCAATCAACAACAGTCTGGTTATGGTTATGGACCCCCTCAACCTGTGAAGCCAAGTGGCAC TCCACCTGTTTATGGACAATCACAGTCGCCCAGCACAGCAGGAGGCTATGGTCAGTCAGCATATCCTCCTGCACAACCCT CACCTGCCGGGTATGCTCAACCAGACCAAAAAGCGCCCGCATCTGGTTATGGTGTTGCAGCGCAACCAGGGTATGGTCCT CAATCATATGGTGCTCCTCAGGGTAGTTATGGTCAGGCACCGCCATCATACGGCAACAGTTCTTATGGTGCTGGTTATGC TCAGACACCTGCTTATGCTAGTGATGGTACTAATGGAGCACCTGCACAGGCGGCGGCAGCAGCTCAACAGGGTGGTGTTG CTAAAGCTTCACCACAGAGTTGA
Protein sequence (LotjaGi1g1v0366300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEAHYAAPASESLKRKYDEPPTHRPTGFSSPHSTVSDIELAKQKAQEVAARLFSGAPPPPIDLKRPKPDNAAPPSSFD SIDLKAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEK LINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESGARIQVIPLHLPPGDPSTERTL KIDGSPEQIESAKQLVNQIINGENRPRNSGGYSQQGYQSRPPSSWAPPAPPMQQPGYGYMQPGAYSGQAPQYNMPQAQYP GYPPQQAGGYSTNWDQSTAPPNQPTAGGYDYYSQQPQQQQNPGGSAASADGSTYNYSQPPSSGYNHPGQGYGQDGYSAYN APPQSGYGQPPTYDQQQGYGSAPSYGSSNPAQEGNTSSYGAQGDSSQAPSVQPSTAAAQGYATNQQPNSTSQQGYGAPPP TSQAAYGNQQQSGYGYGPPQPVKPSGTPPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGP QSYGAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQGGVAKASPQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 81 | 81 | - | – | |
| MobiDBLite | 10 | 24 | 15 | - | – | |
| MobiDBLite | 28 | 42 | 15 | - | – | |
| PANTHER | 32 | 346 | 315 | 1.8E-127 | – | |
| PANTHER | 32 | 346 | 315 | 1.8E-127 | – | |
| SUPERFAMILY | 88 | 172 | 85 | 7.31E-18 | ||
| Gene3D | 89 | 186 | 98 | 9.5E-25 | ||
| SMART | 94 | 167 | 74 | 3.1E-16 | ||
| ProSiteProfiles | 95 | 162 | 68 | 18.491 | – | |
| CDD | 97 | 162 | 66 | 1.59175E-16 | – | |
| Pfam | 98 | 164 | 67 | 1.6E-16 | ||
| Gene3D | 187 | 267 | 81 | 3.0E-26 | ||
| SMART | 187 | 261 | 75 | 1.6E-18 | ||
| ProSiteProfiles | 188 | 256 | 69 | 17.443 | – | |
| CDD | 190 | 256 | 67 | 1.14981E-19 | – | |
| SUPERFAMILY | 191 | 263 | 73 | 1.24E-18 | ||
| Pfam | 192 | 257 | 66 | 3.3E-19 | ||
| MobiDBLite | 262 | 620 | 359 | - | – | |
| MobiDBLite | 262 | 282 | 21 | - | – | |
| MobiDBLite | 306 | 388 | 83 | - | – | |
| MobiDBLite | 398 | 496 | 99 | - | – | |
| MobiDBLite | 507 | 525 | 19 | - | – | |
| MobiDBLite | 565 | 596 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0366300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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