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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0367500 |
| Transcript ID | LotjaGi1g1v0367500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|I1JTX5|I1JTX5_SOYBN Heat shock transcription factor HSFA2; Found in the gene: LotjaGi1g1v0367500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84550386..84555331) extracted from Lotus japonicus Gifu genome v1.2.
CCCACATGAGAGCAACAAATGGCAGAAACTTCTGACAACCTTCGAAAGCAGCCAACATCAACCAATGTTTTCCATTTTCT CTAGAATCTTCTGCTCCCCCGCCATAAAAATCAAACACCCACATCATTCAGTGAAGTAAAGAGTTCAATGAAGGGAATCA TAGTCAAAGAGGAAGAATCAGTGGCATTTGTTGCAGCTGGTTCAACATCATGTGCATCTTCTTCTTCATCTTCAAGCTCA AACCTCTCTCCACAACCCATGGAAGGGTTACACGATGTGGGTCCTCCTCCATTTCTCACCAAGACCTATGAAGTGGTGGA AGATCCTTCCACTGACTCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTCGTCTGGGACTCTAGCAGATTCTCCA CCACCATTTTACCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTATGTAAGTACCAGT TTCTGATGTTCAGCTAGGAATATTTTATGCCCTCTATGTGTTTGATGAATTGTTTGACTCAGTTAATGGTTTCCATACTA GAACTTTTGAATGGAAATTTTCTATTTTTAGCAGTGCCCTTTATGTGTTTGATTAGTTAGCTGAACTTTTGAATAGAAAT TTATATTTTTAGCAATACCCTTATGTGAGCAAATAGTGATCTGATCTTTGGAATTATGATCACAAACAGGGTTTTAGAAA AGTTGATCCTGATCGATGGGAATTTGCAAACGAGGGGTTTTTGGCAGGGCAGAGGCATCTGTTGAAGACTATAAAGAGAA GAAGAAATGTGACAGTGACACAGTCACAGGGAATGCAGCAAGGGGCTTGTATTGAGTTGGGGGAGTATGGGCTGGAAGGT GATATTGACAGGTTGAGGAGAGACAGGATGGTGTTAATGGCAGAAATTGTGAAGTTGAGGCAGCAGCAGCACAATTCTAG GGAGCAATTGACTGCTATGGAGGCTAGATTGCAAACCACTGAGAAGAAACATCAGCAGATGATGACATTCCTTGCCAAGG CTCTCAGTAATCAGTCTTTTATGCAACAATTGGCACACAGGAATGCTCAGAACAAAGAATTGCAGGGTGGTCAGATCAGG CGAAAACGGAGACTGACTGCTAGCCCAAGTGTGGAGAATATGCAACAAGACCCTGTGACCATGATGGTGCCAATTGAATC AGTGGTGGATTTTACAAGTCAAGAACAAGAAGGGTTGGCTACTGTTGAGCCTGAGATGGGGTCAATTTTCTCAGCTGCTT ATGATAATGAATCAAGCAGTGAAATCAAAGACCCAATATCAAGTTCAGTTCCTGCTGCAAGAGGGAGTAATTTGAGTTCA GTCAGTGATGCTATGTGGGAGGACTTGCTGAACCAGGACCTGGTTGCTGGGAACCCTGAGGATGAGGTTGTAATTGGTGA TCTTTCCCAAATTGATGCACCATTGGAGGATTTGGTCTCAAATCCTGATGATTGGACTGAGGATTTGCAAGACCTTGTGG ATCATATGGGTTATCTTGGGTCAAAACCTTAGTGGTTTTAGTCGTGGATTTGTCATTACTTTTGACTTCAATTTACTCCT TCCCCTTGCACCAAGATGGTATGGCTTCATTTGTACTTGATGATATTTATGATTTGATAATTTCTTTGATTTTTGGTTTA AGTGTCAATTTCTGTGATTGTAATTGATGTAAAATATGAATGGTTTGTATGCAGCTAGGGAAGGTGGTAGTTGCAGAAGA AGCCAACCGATATTGCTCTTTATCTGTATCCTTTGTTAAACATCATATTTTTGTGAATAGCTTAATATATCAGTTCTGCT TGTGCTACTATTTTGAATTCCCCGCACTGTTTGTAACTCCATTGTATATTTTGCAGGCAGTATCAAAGGAAGAAATTCTG AGGAGAGGAAAGAAATGATTGACTAGTAAATGAAATAGTGTTTAGTCTGCTGAGATTTTCAAGTGTTTAGGGGGTGAATA ATATTATTTGATTCATGGAGAAGTTATTCTCCAGTGTATATTTGTGAAACACACATTTCTAGTGCTGTTGCAAACACCAA ACACCTCTTACTCGAATGATTTGTTTAACTACGGTGTTTTCTTAATGTTTTCTTAATCACCATTGCCAGATAATCCTTGA TAGTTTCTGCAATGCCTTCTCAAACGAGAAAACAATTGAAGAATAGTTCAACATTTGCTACCTAAGCAAAATTGGTAGGC CGATAGCTTCAATTTACCTAGAACTCAGAAGTGCATTTTTGAATATACGATAACAGATCACAACAGATCACAGTGAGCTA AAATCATGAAGTTCAGCTACTCAAGCCAAGAATAACATCTATTGAACGTGTTATGAGGTCAAGATATCCAGAATGTTTGG ACATACGCTCGACTTTTGACTGTATTTAAAGAAGGATTATTCTTATTCAAGAAAAGTGTCATGATTATGGTGCCAACAGT GGCAGAACTTACTAAATATGGGGGCCATGATTGCCTGATAATCTTTGAGTTAGAGTTATGCTCAGAATTAAGCAGTTGCA CATCAACTTAGATCTAATTCCTCTGTCTGTTTGGAGATTGATTGTTTAACACTCTTTTTGTTATGTAGGAAAGCAGGGAG TGAGAGGTCTTACTTGTCTATTTTAGTGCAGGAGACAATTTCCTTAGTTGCATATTTTGATTCTGTTGGTTTTACTTTTG TTTGTCATTTTAGTAATTCTGTTGCAGACGTTTAGCTCGTAATGTTGTGTCTTCTGACCATTATGTTTGGTGGGGGGAGG GGGGGGAGATGTTCCCCCGGGCCTTGCGACGTTTGTAAACTCTGATTTGCTGGCGTATTTGCCTGTGGATGAAACTGTTA AAAATTACACGCATCTCTTATTGTTTTGATCAAAGGTTTTCAGTGGATGAATTGGGGATAAGTCGAGAACTTTCCAGAAC TTGCACAAAATATCTTTGGCCACAGTCCACATGAGAGCAACAAATGGCAGAAAGAAACTTCTGACAACCTTCGAAAGCAG CCAACATCAACCAACGTTTTCCATCCTCCATTTTCTCTAGAATTCTTCTCCACCGCCATAAATCTCTCTAATTTACAACT AGCAGCAGCAGTCACAGTACACACACACTCATCACATAAAACAGGGTTTTTGAAATAGGGGATATGAGGCATGTGATTTT TTTTAAGAGCCTTAAAGTCTCGACCGTTAAAATTTTGATCTAATGGTTAAAATTACTTCCTCTCACTCTCACATTAAAAT AGGCCCTCTTACTACATACTCTCCCATATCAATCAATATATATTAGAAAAGAAGAACTTCCATCAGACTGATTTAGTGAC GTGTCGTTCTCACATTAATTCTTAGTGACGTGTCCTCTACTGTGAAGCGGTTGGCATGGAGGAAAAATGAGGAAGATCAC TCGAGTATGCAACTTGCTTTATGTGGTGCTGATAATTGTGTAAGTTGATAATTATGTAAGTGTTTGACATAAATGTTTAT GCTTCACTTCCTAAAGGTTATTTTTTGTTGCTGAATTTGATTGACTTAATTAGTGAGCACTATATTTGGTAGTATTGATT CAGTTCCTAAAAGTCATGGCCTTTAATTTTCTCTTAATTTGTTCATTGTTCCCCATTTTGTGATTGTTTTGTTTAATTTC ATATATGCTTTAGTATTTGTTGGTGATTTCTGTGATGCTTCCATATCTCTTAAATAAACTAATGTTGTGATGTTTCCTCT TATGCAACCCTTATTCTGAATGTACTTAATCGGCCAATTGATAACAGACTTACATGCTTTTATCCTTCTCATTGCAAGTT TATTTAATTGCATCATTGTCTTCCAGTTTTGGCTGCCAAAACTTCATCTACAATGTCAGCATCATGAAGGCAGATAAACT CTTACTATGATTGCTTTCAATTCCGTTAAGGAAATGAGATTTCGGTAAGATACTTATTCATATGATTGCTTTCAATTCCA GATTTTGCTATTTTTCTTATTAATTAATAGCTTTTTTTTTTGTTGTCAATTGTAAATCGCTTTTAGACATAGCTATAGTC TCTTTTATTTTGCTTTACTATCTCAATAATGGAAGCTTTTTTTCAATTAGTACATGGGTTAAAATTCTAAATTTGCTTAA CTAAAGGTCTGATTCTATTTGATTTTCAGGTAGTTTCCTATTTGGCTCAAGAATGTTTGGGGTTATGGTCCGGGAACTGC ATTCTTATACCTGTCACATGCATGGGTATTAGTTGTACTCATAGCTGCATCTTTATGTGGAATGGGGTTAGTATATAAGA TTGGTGGCAGAATGAACAGTTATGGATTCATATAATGAGGATAGGGACTTTGTTGAGCTCTATGGACATTACTTCTCTTC CCAATCTTAGGTAAGGGAAGAAATTTATTATATCCTTCACACATTCTGATTGCTTAGTATAAAAAGATTATTAACTCTTA TCCGGGTTTTATGGACTTGCATGTCTGTTGCTGACCTTTTTTCGGTAATTCAATTGTTTTCCACTACCTAAACATTATTT CATTATTCCTCTTAATCTGTTTTGTCCATCTCACATGTGCAATGTAAGCTCTTGCTTGGTTTGCAATTTGATTTGTATTT TTTTCTATAACACATGCATCATCTTGCACAATTTAAGATCATTCCCAATAATGTAGAGTAAAAGAAAGACATTGATGCTA CCAACTACCAAAGAAGCATGACGATGATTGATGATCTATGATGGATTTGCAAGAAAAGGAGCCTGAGTTCTACACCAAGG ATAGTATAAAATGTGTTGTTCTAAATACAGTTGGTGGCTACTATACAGCTCTAAGGGACCACACTTCTTGATAAATGGTG GCAAAAAAGAGCATGCAAAGATCAATGTTTGTTGTAATGATGTTTCAAGGTGTTGCCACCTATGTA
CDS sequence (LotjaGi1g1v0367500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGAATCATAGTCAAAGAGGAAGAATCAGTGGCATTTGTTGCAGCTGGTTCAACATCATGTGCATCTTCTTCTTC ATCTTCAAGCTCAAACCTCTCTCCACAACCCATGGAAGGGTTACACGATGTGGGTCCTCCTCCATTTCTCACCAAGACCT ATGAAGTGGTGGAAGATCCTTCCACTGACTCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTCGTCTGGGACTCT AGCAGATTCTCCACCACCATTTTACCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTA TGGTTTTAGAAAAGTTGATCCTGATCGATGGGAATTTGCAAACGAGGGGTTTTTGGCAGGGCAGAGGCATCTGTTGAAGA CTATAAAGAGAAGAAGAAATGTGACAGTGACACAGTCACAGGGAATGCAGCAAGGGGCTTGTATTGAGTTGGGGGAGTAT GGGCTGGAAGGTGATATTGACAGGTTGAGGAGAGACAGGATGGTGTTAATGGCAGAAATTGTGAAGTTGAGGCAGCAGCA GCACAATTCTAGGGAGCAATTGACTGCTATGGAGGCTAGATTGCAAACCACTGAGAAGAAACATCAGCAGATGATGACAT TCCTTGCCAAGGCTCTCAGTAATCAGTCTTTTATGCAACAATTGGCACACAGGAATGCTCAGAACAAAGAATTGCAGGGT GGTCAGATCAGGCGAAAACGGAGACTGACTGCTAGCCCAAGTGTGGAGAATATGCAACAAGACCCTGTGACCATGATGGT GCCAATTGAATCAGTGGTGGATTTTACAAGTCAAGAACAAGAAGGGTTGGCTACTGTTGAGCCTGAGATGGGGTCAATTT TCTCAGCTGCTTATGATAATGAATCAAGCAGTGAAATCAAAGACCCAATATCAAGTTCAGTTCCTGCTGCAAGAGGGAGT AATTTGAGTTCAGTCAGTGATGCTATGTGGGAGGACTTGCTGAACCAGGACCTGGTTGCTGGGAACCCTGAGGATGAGGT TGTAATTGGTGATCTTTCCCAAATTGATGCACCATTGGAGGATTTGGTCTCAAATCCTGATGATTGGACTGAGGATTTGC AAGACCTTGTGGATCATATGGGTTATCTTGGGTCAAAACCTTAG
Protein sequence (LotjaGi1g1v0367500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGIIVKEEESVAFVAAGSTSCASSSSSSSSNLSPQPMEGLHDVGPPPFLTKTYEVVEDPSTDSIVSWSKARNSFVVWDS SRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRNVTVTQSQGMQQGACIELGEY GLEGDIDRLRRDRMVLMAEIVKLRQQQHNSREQLTAMEARLQTTEKKHQQMMTFLAKALSNQSFMQQLAHRNAQNKELQG GQIRRKRRLTASPSVENMQQDPVTMMVPIESVVDFTSQEQEGLATVEPEMGSIFSAAYDNESSSEIKDPISSSVPAARGS NLSSVSDAMWEDLLNQDLVAGNPEDEVVIGDLSQIDAPLEDLVSNPDDWTEDLQDLVDHMGYLGSKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 22 | 22 | 6.0 | – | |
| PANTHER | 19 | 345 | 327 | 1.4E-121 | – | |
| PANTHER | 19 | 345 | 327 | 1.4E-121 | ||
| MobiDBLite | 21 | 44 | 24 | - | – | |
| MobiDBLite | 21 | 37 | 17 | - | – | |
| Gene3D | 42 | 140 | 99 | 7.6E-38 | ||
| SUPERFAMILY | 45 | 138 | 94 | 2.45E-34 | ||
| SMART | 45 | 138 | 94 | 9.7E-62 | ||
| PRINTS | 49 | 72 | 24 | 6.9E-20 | ||
| Pfam | 49 | 138 | 90 | 1.0E-29 | ||
| PRINTS | 87 | 99 | 13 | 6.9E-20 | ||
| ProSitePatterns | 88 | 112 | 25 | - | ||
| PRINTS | 100 | 112 | 13 | 6.9E-20 | ||
| Coils | 166 | 207 | 42 | - | – | |
| MobiDBLite | 235 | 255 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0367500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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