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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0370000 |
| Transcript ID | LotjaGi1g1v0370000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic; TrEMBL-Plants: tr|V7AT85|V7AT85_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0370000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84832639..84835683) extracted from Lotus japonicus Gifu genome v1.2.
TAGCACATAGCACATAGCCTTATTTGGAGCGAAACTAGACTGGAGTTGGTTCGTTTGCTACCCCTGCCAATGGCCGTGGC AGTGCGGAAAGCCACCGTGAAACCATCCTCCATTGTAACCACCATCACCTCCCTCCTTCAAACACCAGATTCTGAACCTC TGAAAAAATTCTCATGCTACCTCACTCCAAGCTTGGTTACCCAAGTGATCAAGAACACACACAACCCCCACCATGCTCTC TTCTTCTTCAACTGGGCCTCCAACCCTCAACCCAACCCCAACAACTACTCCCACCCTCGCTCCTGTTACGCTGCCATCAC CGACGTCTTGCTTTCCCACTCCCTTTTCTCCACCGCCGACTCCCTCCTCCGCCGCTCCAACAAACTCTCCGACTTCCTCG CCTCCAAATTCATCAACGCTTTCGGCGACCGTGGCGATATCAGAGGCGCCATTCACTGGTTCCACAAAGCCAAAGCCTCT GGGCCTTGCGCGTTGTCTTGTAATGCCGTACTGGGTGTGTTGGTTAGAGCCAACCGGGTCAACCTGGCCAAGGCAATTTA CGACCAGGTTGTGAAGGAAGCTCTGGTGGAGCCTGATGTTTTCACTTACACCACCATGATTAGGGGATTCTGTAAAATGG GCATGGTCGAGAGTGCGCGGAAGGTGTTCGATGAAATGCGCTGTGAGCCTAACGTGATAACTTACAATACAATGATCCAC GGGCTTTGCAAGAAAGGTGAAATGGATGGTGCCATGAGGGTTTTCAATCGATTCGCGGAGAGTAAGAGTTGCAGACCGGA TGTCGTGACTTTTACCACTTTGATTGATGGGTATTCCAAGAGAGGTGAGGTGCAAGAGGCGCTGAACTGCATGAAGGAGA TGCAGGAACAAGGTTGTCAGCCCAATGTTGTGACCTACAATGCGTTGATTGAAGGTCTTTGTTTGAGTGGGAATGTGGAT GAGGCCAAGAGGATGATGAGTAGGATGCGGCTAAAGGGTATCAAAGACAATGTTGCCACAAACACTAGCATGTTGAAGGG CTTTTGCATGGTTGGGAGGTCTGAGGAAGCTATCAAGCATATGAAGGAAATGGTTTCTCGAGGGATGGATCTGGATGTGA AAGCATACAGTGTTATTGTCAATGAGTATTGCAAAATAGGAAAACCAAGTGAAGCAGTTTCAATTCTAAGGGAAATGGTG GCTAAAAGGATGAAGCCAAGTGTGTCAAGTTTCAATGCAGTGTTTAGAGTTCTTGTGGCTGAGAGGAAGCTTGAGGAAGC AGTTCTTCTTTTAAAGAACATGCCTCGAATGGGGTGCTCACCGAACTTCTTATCATACAGTATTGTGATATGTGGTCTCT GTAAAGTGAAAGGTAGGATGCAACTGGTTGAAGAGCTTGTTTCGAGCATGCTCCAGAGTGGACATAACTTGGATGCCACC ATGTACAACTGCTTGCTTGGGGGATATTGTGAAGATGGGGATGAAGAGATGGCATTGAAGACGGTATATGACATGATTGA CAAGAGCTTTCTGTTCAACAAAGACATTTACTGCACTTTTGTTAAGGAGTTGTGTGCAAAGGGGAAAGTGAAAGAGGAGT ATTTGAAGAGATGTGTAGATAACACCTTGTAAGTTGTATCCGATATGAATGGTTATAGAGCGGTGCTATGTCAGTTGACT GGGAAAACTTAGCGTAATTAGATTTCGTGGATCCATTTTGAACTCGACATGTTAAAATAATGCTTCTCTGATCCACGTTA AGCTGAACGTGACAAATTCTAGCTTCTTCATTTATAGATTGAGATAATCTGCACTAACAAACCAAATATACACTTAGCCA ATTGTGTTCTTGTACCTGTAGTTATGTAAATAGGAGATGTTTGTTAACTTGTTTGGTTTTCACGTTGAAGCATAATCAAT TATGAATGAAGTGGTGAAGGAGAAGCATTTGCTACTTTTTACATTTGGTATTTTGATCTTGCTATTTGGATTGATTAACC TCAGATAAGCAATAAAAGTTGGGAAGACTCCACTACCCCTCTCAAAAGTATAGAATGAAATGGGGGTTGAGAAAAAGGTT TTGTCTGTTGAAGTTTACAGTTGAATTATTGGGATTGATGCTGTTGGTTGTGTGACTGAAGCAGGTTTATAGTAAGGGGT TTCTCTGTGTATTATAGCCATATTTTGTTGTTGATCCATGGCATGAAGATTTGATATATACATATTATATTGTGAATTAC AAATTATTAAGCTATGAGGAGACAGATATATGTGGCAACATGTTCACCCGCTCGGGATACTGAATCTGGTTATGTAGCTT GGGGTCACTCCACTCTTGTTGGACCAGTAAGTGGATCTTTCCTTGGGTAGAGCCATTTAAATTTGTTGATTATTCTGAGT TTTAATCGTGATTGGAAGGGGAGATATCTTTAATTGTCAGCAAAGCTTATGAAGCTGACTTTTTGCGTCTTACTATGGAA CATATCAATGTGGCAGTTTGTAGAAGTTATGGCTACTACAGAACATGAGGAAGCAACCATCATAGCTGAAATTGATTATT CAATATTGGAGCAGAGAAGGTTTTTCTTCTTCTTCACTCTACAATTGTGTCTTGCACATGTTTAATTTAACCATTGATTA CCAGTCATAATCACTGAAATATTTTGGTGCTTCAATCATTCAGGACAAGTGTCCCTGTGACAAAGCAACGAAGAGGCGAT CTTTACCAATTGATGGATCTTCAGAGGCTGAATTCCTCCTAGAGGGAGCAGGACTTATTACATTTGAGACACCTTCAGTA CCTTGTGTGCAGCATGGCATGAGCTTGCCATATGACTTGTGGTTATTGGATGTTGTATTATAACTGATATGAAACCCAAA CCCTGACGGGAAGAATAAAATAAATGAATGTGTGTTCTCTTGAATAGTTTGTTCTGTGGTTAATGGCTATCATATTTCTC AGATTGGGGATGGATCATCAATGAAAAACCATTCACTACTAGAGTGCCATTGACAGGCACCACAATTCACAATGTGAAAA CGGAG
CDS sequence (LotjaGi1g1v0370000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTGGCAGTGCGGAAAGCCACCGTGAAACCATCCTCCATTGTAACCACCATCACCTCCCTCCTTCAAACACCAGA TTCTGAACCTCTGAAAAAATTCTCATGCTACCTCACTCCAAGCTTGGTTACCCAAGTGATCAAGAACACACACAACCCCC ACCATGCTCTCTTCTTCTTCAACTGGGCCTCCAACCCTCAACCCAACCCCAACAACTACTCCCACCCTCGCTCCTGTTAC GCTGCCATCACCGACGTCTTGCTTTCCCACTCCCTTTTCTCCACCGCCGACTCCCTCCTCCGCCGCTCCAACAAACTCTC CGACTTCCTCGCCTCCAAATTCATCAACGCTTTCGGCGACCGTGGCGATATCAGAGGCGCCATTCACTGGTTCCACAAAG CCAAAGCCTCTGGGCCTTGCGCGTTGTCTTGTAATGCCGTACTGGGTGTGTTGGTTAGAGCCAACCGGGTCAACCTGGCC AAGGCAATTTACGACCAGGTTGTGAAGGAAGCTCTGGTGGAGCCTGATGTTTTCACTTACACCACCATGATTAGGGGATT CTGTAAAATGGGCATGGTCGAGAGTGCGCGGAAGGTGTTCGATGAAATGCGCTGTGAGCCTAACGTGATAACTTACAATA CAATGATCCACGGGCTTTGCAAGAAAGGTGAAATGGATGGTGCCATGAGGGTTTTCAATCGATTCGCGGAGAGTAAGAGT TGCAGACCGGATGTCGTGACTTTTACCACTTTGATTGATGGGTATTCCAAGAGAGGTGAGGTGCAAGAGGCGCTGAACTG CATGAAGGAGATGCAGGAACAAGGTTGTCAGCCCAATGTTGTGACCTACAATGCGTTGATTGAAGGTCTTTGTTTGAGTG GGAATGTGGATGAGGCCAAGAGGATGATGAGTAGGATGCGGCTAAAGGGTATCAAAGACAATGTTGCCACAAACACTAGC ATGTTGAAGGGCTTTTGCATGGTTGGGAGGTCTGAGGAAGCTATCAAGCATATGAAGGAAATGGTTTCTCGAGGGATGGA TCTGGATGTGAAAGCATACAGTGTTATTGTCAATGAGTATTGCAAAATAGGAAAACCAAGTGAAGCAGTTTCAATTCTAA GGGAAATGGTGGCTAAAAGGATGAAGCCAAGTGTGTCAAGTTTCAATGCAGTGTTTAGAGTTCTTGTGGCTGAGAGGAAG CTTGAGGAAGCAGTTCTTCTTTTAAAGAACATGCCTCGAATGGGGTGCTCACCGAACTTCTTATCATACAGTATTGTGAT ATGTGGTCTCTGTAAAGTGAAAGGTAGGATGCAACTGGTTGAAGAGCTTGTTTCGAGCATGCTCCAGAGTGGACATAACT TGGATGCCACCATGTACAACTGCTTGCTTGGGGGATATTGTGAAGATGGGGATGAAGAGATGGCATTGAAGACGGTATAT GACATGATTGACAAGAGCTTTCTGTTCAACAAAGACATTTACTGCACTTTTGTTAAGGAGTTGTGTGCAAAGGGGAAAGT GAAAGAGGAGTATTTGAAGAGATGTGTAGATAACACCTTGTAA
Protein sequence (LotjaGi1g1v0370000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAVRKATVKPSSIVTTITSLLQTPDSEPLKKFSCYLTPSLVTQVIKNTHNPHHALFFFNWASNPQPNPNNYSHPRSCY AAITDVLLSHSLFSTADSLLRRSNKLSDFLASKFINAFGDRGDIRGAIHWFHKAKASGPCALSCNAVLGVLVRANRVNLA KAIYDQVVKEALVEPDVFTYTTMIRGFCKMGMVESARKVFDEMRCEPNVITYNTMIHGLCKKGEMDGAMRVFNRFAESKS CRPDVVTFTTLIDGYSKRGEVQEALNCMKEMQEQGCQPNVVTYNALIEGLCLSGNVDEAKRMMSRMRLKGIKDNVATNTS MLKGFCMVGRSEEAIKHMKEMVSRGMDLDVKAYSVIVNEYCKIGKPSEAVSILREMVAKRMKPSVSSFNAVFRVLVAERK LEEAVLLLKNMPRMGCSPNFLSYSIVICGLCKVKGRMQLVEELVSSMLQSGHNLDATMYNCLLGGYCEDGDEEMALKTVY DMIDKSFLFNKDIYCTFVKELCAKGKVKEEYLKRCVDNTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| PANTHER | 44 | 365 | 322 | 8.8E-100 | – | |
| ProSiteProfiles | 107 | 137 | 31 | 5.053 | ||
| Gene3D | 110 | 236 | 127 | 7.6E-31 | ||
| SUPERFAMILY | 119 | 347 | 229 | 3.14E-9 | – | |
| ProSiteProfiles | 140 | 174 | 35 | 6.544 | ||
| Pfam | 173 | 204 | 32 | 2.9E-14 | ||
| ProSiteProfiles | 176 | 206 | 31 | 12.047 | ||
| TIGRFAM | 178 | 208 | 31 | 4.3E-10 | ||
| Pfam | 205 | 234 | 30 | 2.9E-14 | ||
| ProSiteProfiles | 208 | 243 | 36 | 12.222 | ||
| TIGRFAM | 210 | 245 | 36 | 1.0E-9 | ||
| Gene3D | 237 | 304 | 68 | 8.2E-28 | ||
| Pfam | 243 | 291 | 49 | 2.6E-19 | ||
| ProSiteProfiles | 244 | 278 | 35 | 13.57 | ||
| TIGRFAM | 246 | 280 | 35 | 3.4E-11 | ||
| ProSiteProfiles | 279 | 313 | 35 | 12.463 | ||
| TIGRFAM | 281 | 312 | 32 | 5.1E-8 | ||
| Gene3D | 305 | 379 | 75 | 4.6E-15 | ||
| Pfam | 314 | 362 | 49 | 3.4E-10 | ||
| ProSiteProfiles | 314 | 348 | 35 | 10.194 | ||
| TIGRFAM | 319 | 349 | 31 | 3.1E-4 | ||
| PANTHER | 345 | 510 | 166 | 8.8E-100 | – | |
| ProSiteProfiles | 349 | 383 | 35 | 11.915 | ||
| TIGRFAM | 352 | 384 | 33 | 1.0E-5 | ||
| Pfam | 383 | 432 | 50 | 1.2E-11 | ||
| ProSiteProfiles | 384 | 418 | 35 | 10.183 | ||
| TIGRFAM | 387 | 419 | 33 | 1.4E-5 | ||
| Gene3D | 390 | 519 | 130 | 1.1E-23 | ||
| ProSiteProfiles | 419 | 454 | 36 | 9.131 | ||
| ProSiteProfiles | 455 | 489 | 35 | 9.427 | ||
| Pfam | 458 | 486 | 29 | 3.7E-4 | ||
| TIGRFAM | 458 | 488 | 31 | 9.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0370000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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