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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0370600 |
| Transcript ID | LotjaGi1g1v0370600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mechanosensitive ion channel family protein; TAIR: AT5G12080.1 mechanosensitive channel of small conductance-like 10; Swiss-Prot: sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10; TrEMBL-Plants: tr|K7KTA0|K7KTA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0370600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84911114..84915716) extracted from Lotus japonicus Gifu genome v1.2.
AGCTCATGCACCTCATTGCCCATTATTTATTTAACAAATTTAGTACTATTTCTTAAACATTCACAGACCATCGTCATCCC TATTTTATTTTCCATTTCTCTTCCTATCAAAGATTATATTATATATTCCACATGATATCACTTCTATATCTTTTCTTCGA TTTTCTGTTTTATTTATGGATATGAGTGTCTACTGTCTACTCTACACCATTCTCTATGAACCGTCTTCCTTCAACAGCCA ACTTTCTCTGTCACCCACTATTTCCAGCCTGACATATCTAGTTTTGCTTACATGCTCTTGTATTATACTATTGTATATTA TTCTATTATTTCATAAAAGACAATATAAATATTAAATACATTGATTGAAGCAAGTATAATATATAGTTATATACTTTATC TGGGACTCTGGGTTTCTATTTGCTACTCTACTAGTGTCACTGTGTTTTCTTTCTTTCTTGTAATTGTTCCTCGTATTACA CAATCAAGGAGTATTTGATTTTGATCTCTGAGTTGATTAACTTGCACATGTTTCTATATTTGTTCATATGATTCATAGGT TGTGAATGACTGAATGGATGGTAATAAGCAGCAAGCAAGTGAAGTGAGCATGATAGAGAAGAGAAGAGAAGTGGTGGTGA CCATTGCAAATGCTGCAGGTGGAGAGAGCCATGACTTGAAAGTTGTTGAACCTTCCACACCAAGGGTGGATTCACCTCAG AGAATGGAAAATGAGGTTTCTGCAGCTGCAACAAAGTCACCACCCTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCC TAGTCCAAACAAGCCCCCCAAAATTCCCACCACCACCAACAACAACAACCTCATCAGAAGGAAATCACTCTCAAGGTCAG TGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACATTGATGGTGGTACTACCATTTTAGAAGAGAATGAAACT GTAACTTTGCAAGAACAAATAGGTTCACCATATAGAAACTCTTTCAAATCTGGGGTGGTTAATAGAACTATCTCCATCAC TTCTGTTATCACTCCCAGGACACCATTGATGGCTTCTCCTGGTCCTACTGAGGATCCTGATGAAATCATTTACAAGAAGG TTGAATTGAGCAAAGGATACCATAGGAGACTGACAACTAAGGTTTTGATTGAATGGTTTGTGTTTGTATTCATTTTTGGT AACCTGCTTGCTAGCTTAACAGTTGGCAAGTTGAGAAATTTCAAGATTTGGGGTTTAGGGTTTTGGAGGTGGTGTGTGCT TGTGATGGTGACATTTTGTGGCTTGTTGGTCTCCAAATGGTTCATGCACCTTGTTGTTTTCTTGATTGAGATGAATTTCT TGTTGAAGAAAAAGGTGTTGTACTTTGTCCATGGGCTGAAGAAATGTGTGCAGGTCTTCATTTGGCTTGGCTTGGTTCTT ATCACATGGGTTCTGTTAATCAATAGCGGCTCGGTCCGGCGATCGGATCTTGCCAATAAAATTTTGGATGGTATAACATG GACTCTTGTTTCCTTTCTCATTGGAGCATTCCTGTGGTTCATAAAGACATTGTTGCTGAAGATTTTGGCATCAACTTTCC ATGTGAAATCGTTCTTCGATCGGATTCAAGAATCAATATTCCATCAGTATATTCTGCAGACTCTCTCCGGGCCTCCACTT ATAGAAGAGGCTGAGAAGGTTGGGGGATCGCAAAGCATCGGTCATTTTAGTTTCAGGAGCACAACTAGTAAAGGAGGTAA AAAGAAAGAGGTTATTGATATGGCAAAGCTTCACCAGATAAAGCAAGAGAAAGTTTCTGCGTGGACAATGAAACTTTTGA TAGATGCGGTGACAAACTCAAGGCTTACCACAATCTCTAATTCACTGGATGAAAGTTTCTATGATTGTGAAAATGAACAA GCTGATAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCAGCCTACTACATTTTTAGGAATCTTTCTGCGCCTGGTTG CACGTAAGAAAGAATATATAGTTATATACACTATCACTTGTAGTTGCTTGTAAATCAATAAATCTTTATGTATTTTTTAT CTTCTTTGTTCTTGTTGCTGCTAAAAAGTTCTCTCATTATGAATAGGTACATTGATGATGATGAACTGCGAAGGTTCATG ATTAAGGAAGAAGTGCGTTATATATATCCCCTACTAGCTGAAGCAGAGACGGGACAAATTACCAGAAAGTCATTAACAGC ATGGGTGGTAAGGTCTTTTATCTATGTTTGTATAAACTTTGTCACAATAGTGATGGATTGAAATTCTGTTAGGTACCTAA GATTTAACTTCATAATTTTTGTGTTCTTCAGTTGAAGGTATACCAAGAACGCAGAGCATTGGCACATGCCTTAAGCGACA CCAAAACAGCTGTGAAACAATTAAACAAGCTTATATCAGGGCTCTTGGTAGTTGTGACCTTAGTAGTGTGGCTTCTGCTA ATGGAGATCGCAACAACAAAATTGCTTTTATTCCTCTCGTCGCAGCTATTGCTTGCAGGTTTCATGTTTTCAAACACATG CAAGAATATATTTGAAGCTATCATCTTTGTATTCGTAATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTAGATGGTG TTCAGGTAAACCTATAGCACCTAAGTTTTTTATGTCTTAGTTTGAGATTTGCAAATTAATGTGTTATGATAACATGGCAG ATGGTTGTTGAAGAAATGAATATATTGACTACAGTCTTCTTGAAAGCTAATAATGAGAAAGTTTACTATCCAAACTCTGT TCTGGCCACAAAACCCATTAGCAACTATTACAGAAGCCCAGATATGGTTGATAATGTAGATTTCTCAATTGATTTCATGA CACCAGCAGAGAAAATTGGGGCCCTGAAGGAAAATATAAAGAGGTATGCTTATTGTATCTTCTTGGGTAAATCAGTAGGG TATTTACTCTTTAGTATCCTTTTTGTCTCTGGAAATTTGAACTCCCCTTCATTAAATGCTTTTGTTGTAAGGTTATGTCA TAGCTTCTAAGTATTATTTTTTCGGATTAGGATCCTCTCAAACATTGTGTCTATCTCTCTGTTCATAAATATTCAAAGGG TCCTATTTAATACATGTGAAGAGAGACATAAACACAAAATCTAAATATGACGAAACATGTGAGAATCCTGATCCTATTTT GTCCATTCATGGACAGAGTAATTCTTGCATGCGCGGTGCTTATAGATACAATCAACCAAAAGCTTAAGATATATCAAAAT AACAATTATTTCAATGGACTTTGAATCTTTGATTACTCCAATGACACTTTCTCATGCATGTGACTAATAGAAGGAAAATT GAACTTTCTTTTGGAATGCCTTCTGAGTTTTTCACTTGTTGCTGTGATTTAATTTCTAATCAACATTGTGGAAGCACAAT ATCATACATTCATACTCAAGATTACTATATAATGAGCATGTTGCATTATATCCTATTGTGAATTAAGATCTTGCTTTTAA GTTTGATAGAGACTTAATGGTCCCATTTACTTATTATAAGTCAAGGTGTTCATCTCAAATAGGAATATAGTCAGGTTATT TTGTCACGAAATTGGAACAAGTCTTATTCCAGTCTTGGTAGCATGTGCATGTCTATGCTTTTCTCTGTTCTAATGTCATA TTGAAAATTAGGTACGTGGAGAAAAATCCCCAATACTGGCATCCTGGTCACAGCTTAATTGTGATGGAGATTGAAAATGT GAATAAGATTAAGATGAGTCTCTTTGTTATCCACACAATGAACTTTCAAGAGTATCCAGAGAAGAGTAAGCGAAGAAGTG AGCTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTTAATATCAGATACAACCTTCTTCCGCAAGATGTTCATCTCAGA CATGTGGAACCAGATATGAGTGCACACAAATAGATGATTCTTGCTCTTTACTCCGCAACAGCATGAATGTAGCTTCATCC ATTTGTTTTATTTGTCAAATACCATCAGAACTTTTTCCTACATTTAGATTATGAAATTGTGACTTCAGGACTCTTTTTTA TGAGTATGACTGACTATTCTAACTATATCTGAATCTGAGAACCAAATCTTTCACCTTAGTTGTTAATTTCAGTAGTTTTC TGATGACAAAACAGTACTTGAGTACCAAAATATTCTTCAGGTATCGTTACGAAATGGTAACTGGTAAGTGGCATTGGATT ATCAATTTTTACCCCTGTATGGTCATTTGTCCTCATATTGTATTTTTTATCATGTAATTGGTTATTTACTTTTTCATCTG TACCAAAAGTTTCATGCTAAATACTGGTGCCGTACTTATGAAATACTTAAAACAGTTGCATCTAACAAATAATTTAATTT TCTGGTTCAGGTTTTATTTTTATTTTTCCTCAAATGGTGGTTTCTGGGCTGATTTGTCTTTTTGCTAGGTCTTTGTAACC ATTTTCTGGTTTTGGGCTGACTCCCTTACTTATCTAAATATTTGGATTTCAACCACACAAAAAAAAAAATCTAATTTTCC CCATTTTCATACTTTTAAGTTAAGGTTTTTAAAAGAAATAAAC
CDS sequence (LotjaGi1g1v0370600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTAATAAGCAGCAAGCAAGTGAAGTGAGCATGATAGAGAAGAGAAGAGAAGTGGTGGTGACCATTGCAAATGC TGCAGGTGGAGAGAGCCATGACTTGAAAGTTGTTGAACCTTCCACACCAAGGGTGGATTCACCTCAGAGAATGGAAAATG AGGTTTCTGCAGCTGCAACAAAGTCACCACCCTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCTAGTCCAAACAAG CCCCCCAAAATTCCCACCACCACCAACAACAACAACCTCATCAGAAGGAAATCACTCTCAAGGTCAGTGTATTCCAAGCC CAAATCAAGATTTGGTGAACAACCTTACATTGATGGTGGTACTACCATTTTAGAAGAGAATGAAACTGTAACTTTGCAAG AACAAATAGGTTCACCATATAGAAACTCTTTCAAATCTGGGGTGGTTAATAGAACTATCTCCATCACTTCTGTTATCACT CCCAGGACACCATTGATGGCTTCTCCTGGTCCTACTGAGGATCCTGATGAAATCATTTACAAGAAGGTTGAATTGAGCAA AGGATACCATAGGAGACTGACAACTAAGGTTTTGATTGAATGGTTTGTGTTTGTATTCATTTTTGGTAACCTGCTTGCTA GCTTAACAGTTGGCAAGTTGAGAAATTTCAAGATTTGGGGTTTAGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACA TTTTGTGGCTTGTTGGTCTCCAAATGGTTCATGCACCTTGTTGTTTTCTTGATTGAGATGAATTTCTTGTTGAAGAAAAA GGTGTTGTACTTTGTCCATGGGCTGAAGAAATGTGTGCAGGTCTTCATTTGGCTTGGCTTGGTTCTTATCACATGGGTTC TGTTAATCAATAGCGGCTCGGTCCGGCGATCGGATCTTGCCAATAAAATTTTGGATGGTATAACATGGACTCTTGTTTCC TTTCTCATTGGAGCATTCCTGTGGTTCATAAAGACATTGTTGCTGAAGATTTTGGCATCAACTTTCCATGTGAAATCGTT CTTCGATCGGATTCAAGAATCAATATTCCATCAGTATATTCTGCAGACTCTCTCCGGGCCTCCACTTATAGAAGAGGCTG AGAAGGTTGGGGGATCGCAAAGCATCGGTCATTTTAGTTTCAGGAGCACAACTAGTAAAGGAGGTAAAAAGAAAGAGGTT ATTGATATGGCAAAGCTTCACCAGATAAAGCAAGAGAAAGTTTCTGCGTGGACAATGAAACTTTTGATAGATGCGGTGAC AAACTCAAGGCTTACCACAATCTCTAATTCACTGGATGAAAGTTTCTATGATTGTGAAAATGAACAAGCTGATAAAGAGA TTACAAATGAGATGGAAGCAACTGCTGCAGCCTACTACATTTTTAGGAATCTTTCTGCGCCTGGTTGCACGTACATTGAT GATGATGAACTGCGAAGGTTCATGATTAAGGAAGAAGTGCGTTATATATATCCCCTACTAGCTGAAGCAGAGACGGGACA AATTACCAGAAAGTCATTAACAGCATGGGTGTTGAAGGTATACCAAGAACGCAGAGCATTGGCACATGCCTTAAGCGACA CCAAAACAGCTGTGAAACAATTAAACAAGCTTATATCAGGGCTCTTGGTAGTTGTGACCTTAGTAGTGTGGCTTCTGCTA ATGGAGATCGCAACAACAAAATTGCTTTTATTCCTCTCGTCGCAGCTATTGCTTGCAGGTTTCATGTTTTCAAACACATG CAAGAATATATTTGAAGCTATCATCTTTGTATTCGTAATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTAGATGGTG TTCAGATGGTTGTTGAAGAAATGAATATATTGACTACAGTCTTCTTGAAAGCTAATAATGAGAAAGTTTACTATCCAAAC TCTGTTCTGGCCACAAAACCCATTAGCAACTATTACAGAAGCCCAGATATGGTTGATAATGTAGATTTCTCAATTGATTT CATGACACCAGCAGAGAAAATTGGGGCCCTGAAGGAAAATATAAAGAGGTACGTGGAGAAAAATCCCCAATACTGGCATC CTGGTCACAGCTTAATTGTGATGGAGATTGAAAATGTGAATAAGATTAAGATGAGTCTCTTTGTTATCCACACAATGAAC TTTCAAGAGTATCCAGAGAAGAGTAAGCGAAGAAGTGAGCTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTTAATAT CAGATACAACCTTCTTCCGCAAGATGTTCATCTCAGACATGTGGAACCAGATATGAGTGCACACAAATAG
Protein sequence (LotjaGi1g1v0370600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGNKQQASEVSMIEKRREVVVTIANAAGGESHDLKVVEPSTPRVDSPQRMENEVSAAATKSPPLNCASPEIRFMPSPNK PPKIPTTTNNNNLIRRKSLSRSVYSKPKSRFGEQPYIDGGTTILEENETVTLQEQIGSPYRNSFKSGVVNRTISITSVIT PRTPLMASPGPTEDPDEIIYKKVELSKGYHRRLTTKVLIEWFVFVFIFGNLLASLTVGKLRNFKIWGLGFWRWCVLVMVT FCGLLVSKWFMHLVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWLGLVLITWVLLINSGSVRRSDLANKILDGITWTLVS FLIGAFLWFIKTLLLKILASTFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSQSIGHFSFRSTTSKGGKKKEV IDMAKLHQIKQEKVSAWTMKLLIDAVTNSRLTTISNSLDESFYDCENEQADKEITNEMEATAAAYYIFRNLSAPGCTYID DDELRRFMIKEEVRYIYPLLAEAETGQITRKSLTAWVLKVYQERRALAHALSDTKTAVKQLNKLISGLLVVVTLVVWLLL MEIATTKLLLFLSSQLLLAGFMFSNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTVFLKANNEKVYYPN SVLATKPISNYYRSPDMVDNVDFSIDFMTPAEKIGALKENIKRYVEKNPQYWHPGHSLIVMEIENVNKIKMSLFVIHTMN FQEYPEKSKRRSELVMEIKKIFEELNIRYNLLPQDVHLRHVEPDMSAHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 196 | 196 | - | – | |
| PIRSF | 4 | 768 | 765 | 1.8E-204 | ||
| PANTHER | 14 | 766 | 753 | 0.0 | – | |
| PANTHER | 14 | 766 | 753 | 0.0 | – | |
| MobiDBLite | 33 | 66 | 34 | - | – | |
| MobiDBLite | 46 | 63 | 18 | - | – | |
| TMHMM | 197 | 216 | 20 | - | – | |
| Phobius | 197 | 218 | 22 | - | – | |
| Phobius | 219 | 229 | 11 | - | – | |
| Phobius | 230 | 258 | 29 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 259 | 278 | 20 | - | – | |
| TMHMM | 279 | 298 | 20 | - | – | |
| Phobius | 279 | 298 | 20 | - | – | |
| Phobius | 299 | 309 | 11 | - | – | |
| Phobius | 310 | 330 | 21 | - | – | |
| TMHMM | 313 | 335 | 23 | - | – | |
| Phobius | 331 | 543 | 213 | - | – | |
| Pfam | 543 | 748 | 206 | 1.4E-24 | ||
| TMHMM | 544 | 566 | 23 | - | – | |
| Phobius | 544 | 564 | 21 | - | – | |
| Phobius | 565 | 575 | 11 | - | – | |
| Phobius | 576 | 599 | 24 | - | – | |
| TMHMM | 576 | 598 | 23 | - | – | |
| SUPERFAMILY | 591 | 651 | 61 | 4.9E-12 | ||
| Phobius | 600 | 769 | 170 | - | – | |
| Gene3D | 602 | 651 | 50 | 1.9E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0370600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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