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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0372200 |
| Transcript ID | LotjaGi1g1v0372200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170; TrEMBL-Plants: tr|G7J944|G7J944_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0372200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85025456..85028374) extracted from Lotus japonicus Gifu genome v1.2.
CTCACACCTTCACTCTCACACTCACACCCTCTCCCTCTTGCTCAATGCTTCACCATCCTCCGCGACGCCATTGCCGCCTC CGACTTACTCCTCGGAAAGCGAGCTCATGCCCGCATTCTAACCTCCGGCCACTACCCCGATCGTTTTCTAACCAACAACC TCATCACCATGTACGCCAAATGCGGCTCTCTTTCCTCAGCACGCCAACTGTTTGACACAACGCCTGAACATGACAGGGAC CTAGTCACCTGGAACTCCATTCTCGCTGCTTATGCCCGCGCCGGAGAACTCGACGGGGAGAAAACTCAAGAGGGTTTTCG CCTCTTCCGCCTTCTCCGTCAATCCGTGGAGCTCACCACCCGTCATACCTTGGCCCCTCTCTTCAAGATGTGTCTCCTCT CTGGTTCTCCATCAGCTTCTGAGACGCTGCACGGTTACGCTGTGAAGATTGGGCTGCAATGGGATGTGTTTGTGGCTGGG GCTTTGGTGAATATCTATGCCAAGTTTCGACGAATCAGAGATGCCCGTGTCCTGTTTGATAGGATGCCTCTGAGGGATGT GGTGCTCTGGAACGTGATGTTGAAGGCCTATGTGGAAATGGGTTTTGGGGATGAAGCTTTGCGCCTGTTCTCTGCGTTTC ACCGGAGTGGGCTGCGTCCTGATGGCATTAGTGTCCGAACTCTTCTAATGGGGTTTGGTCAAAAAACTGTTTTTGATAAG CAGTTGAATCAGGTTCGAGCTTATGCCAGTAAGTTGTTTCTTTGTGATGATGAGTCGGATGTCATTGTGTGGAACAAGAC CTTGTCTCAATATCTCCAAGCAGGAGAACCTTGGGAAGCTGTTGATTGTTTTAAAGACATGGTCAAATCACGTGTCCCAT ATGACAGCTTGACTTTAGTTGTGATAATGTCTGCGGTTGCGAGTGTGAACCATCTTGAACTGGGAAAGCAGATTCACGGC GTTGTTGTGAGATTAGGGATGGATCAGGTTGTCTCCCTTGCAAATAGCATTATCAATATGTATGTTAAGGCTGGTTCTGT TAATTATGCAAGGATAGTGTTCAGTCAAATGAAAGAAGCAGATTTAATATCGTGGAACACTGTGATATCTGGTTGTGCAC TTAGTGGTTTGGAGGAGTTGTCCACTAGCTTGTTCATTGATTTATTACGCACTGGCCTATTGCCAGATCAATTCACCATT GCGAGTGTTTTGAGGGCTTGCTCCTCTCTTAGAGAAAGCTACTATCTTGCGAGGCAGATTCATACTTGTGCATTAAAAGC TGGTATTGTCTTGGATTCATTTGTTTCAACTGCTCTAATTGATGTCTATTCTAAGAGTGGAAAGATGGAGGAAGCAGGGC TTCTTTTTCATAGCCAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGGTACATAGTGAGTTATAACTAT CGCGAAGCCTTGAGGCTCTTCAGTCTAATGTATAAAAGTGGGGAGAGAGTAGATCAGATCACTTTGGCGAATGCAGCCAA AGCCGCCGGATGCTTGGTGGGGCATGGGCAAGGGAAGCAAATTCATGCTGTCGTTATAAAAAGGAGGTTTGTTTTAGATT TGTTTGTAATTAGTGGTATTCTGGACATGTATCTGAAATGTGGAGAGATGGAAAGTGCACGCAAAGTTTTCAGTGGGATC CCTTGGCCAGATGATGTGGCATGGACCACTATGATTTCAGGTTGTGTGGAAAATGGGGAGGGGGAGCATGCTCTTTCTAC ATACCATCAAATGAGACATGCTGGGGTACAACCTGATGAGTATACCTTTGCTACCCTAGTCAAGGCTAGCTCTCTTTTAA CAGCTTTGGAACAGGGGAAACAGATTCATGCAAATGTCATAAAGTTGAACTGTGCTTTTGATCCTTTTGTCATGACCTCA CTTGTTGACATGTATGCCAAGTGTGGGAACATAGAAGATGCATATGGTTTGTTTAAGAGAATGGACACAAGGACTATTGC CTTGTGGAATGCTATGATAATAGGGTTAGCTCAATATGGGAATGCTGAAGAAGCCCTCTACTTTTTCAAAGATATGAAAT CTAAGGGTGTTACCCCAGATAGAGTTACTTTTATAGGGGTCCTTTCAGCGTGTAGTCATTCTGGTTTGATATCTGAAGCC TATGAAAATTTTTATTCTATGCAGAAAGACTATGGAATTGAACCTGAGATTGAGCACTATTCTTGTCTTGTGGATGCCCT TAGTCGTGCGGGTTGCATACAAGAAGCTGAAAAGGTGGTATCATCAATGCCTTTTGAAGGTTCTGCTTCAATGTATAGAA CTTTGCTCAATGCTTGTAGGGTTCAGGGAGACCAAGAGACTGGAAAACGCGTAGCAGAAAAGCTTTTTACCTTGGAGCCA TCTGATTCTGCGGCTTATGTTCTTTTATCCAATATTTATGCAGCTGCTAACCAATGGGAAAATGTGGTGAGTGCTAGAAA TATGATGAAAAGGGTAAATGTAAAGAAGGATCCAGGATTTAGTTGGGTAGATATCAAGAACAAGGTGCATTTATTTGTAG CTGGAGATACATCGCATGAAGAAACTGATTCAATATATAAAAAGGTGGAATGTGTTATGAAAAGGATCAGGGAAGAAGGA TATGTCCCTGATACAGACTTTACACTTGCTGATATAGAAGAAGAAGATAAAGAAAGTGCTTTGTACTATCATAGTGAGAA GTTAGCAATAGCTTACGGGCTCCTAAAAACTCCCCCATCCACCACATTAAGGATAATTAAAAACCTTAGAGTATGTGGAG ATTGCCATAACGCAATCAAATATATATCGAAGGTTTTTCAGCGAGAGATCGTTTTGAGAGATGCAAATCGATTTCATCGT TTCAGGAGTGGGAGCTGCTCTTGTGGTGATTACTGGTGA
CDS sequence (LotjaGi1g1v0372200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACGCCAAATGCGGCTCTCTTTCCTCAGCACGCCAACTGTTTGACACAACGCCTGAACATGACAGGGACCTAGTCAC CTGGAACTCCATTCTCGCTGCTTATGCCCGCGCCGGAGAACTCGACGGGGAGAAAACTCAAGAGGGTTTTCGCCTCTTCC GCCTTCTCCGTCAATCCGTGGAGCTCACCACCCGTCATACCTTGGCCCCTCTCTTCAAGATGTGTCTCCTCTCTGGTTCT CCATCAGCTTCTGAGACGCTGCACGGTTACGCTGTGAAGATTGGGCTGCAATGGGATGTGTTTGTGGCTGGGGCTTTGGT GAATATCTATGCCAAGTTTCGACGAATCAGAGATGCCCGTGTCCTGTTTGATAGGATGCCTCTGAGGGATGTGGTGCTCT GGAACGTGATGTTGAAGGCCTATGTGGAAATGGGTTTTGGGGATGAAGCTTTGCGCCTGTTCTCTGCGTTTCACCGGAGT GGGCTGCGTCCTGATGGCATTAGTGTCCGAACTCTTCTAATGGGGTTTGGTCAAAAAACTGTTTTTGATAAGCAGTTGAA TCAGGTTCGAGCTTATGCCAGTAAGTTGTTTCTTTGTGATGATGAGTCGGATGTCATTGTGTGGAACAAGACCTTGTCTC AATATCTCCAAGCAGGAGAACCTTGGGAAGCTGTTGATTGTTTTAAAGACATGGTCAAATCACGTGTCCCATATGACAGC TTGACTTTAGTTGTGATAATGTCTGCGGTTGCGAGTGTGAACCATCTTGAACTGGGAAAGCAGATTCACGGCGTTGTTGT GAGATTAGGGATGGATCAGGTTGTCTCCCTTGCAAATAGCATTATCAATATGTATGTTAAGGCTGGTTCTGTTAATTATG CAAGGATAGTGTTCAGTCAAATGAAAGAAGCAGATTTAATATCGTGGAACACTGTGATATCTGGTTGTGCACTTAGTGGT TTGGAGGAGTTGTCCACTAGCTTGTTCATTGATTTATTACGCACTGGCCTATTGCCAGATCAATTCACCATTGCGAGTGT TTTGAGGGCTTGCTCCTCTCTTAGAGAAAGCTACTATCTTGCGAGGCAGATTCATACTTGTGCATTAAAAGCTGGTATTG TCTTGGATTCATTTGTTTCAACTGCTCTAATTGATGTCTATTCTAAGAGTGGAAAGATGGAGGAAGCAGGGCTTCTTTTT CATAGCCAAGATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGGTACATAGTGAGTTATAACTATCGCGAAGC CTTGAGGCTCTTCAGTCTAATGTATAAAAGTGGGGAGAGAGTAGATCAGATCACTTTGGCGAATGCAGCCAAAGCCGCCG GATGCTTGGTGGGGCATGGGCAAGGGAAGCAAATTCATGCTGTCGTTATAAAAAGGAGGTTTGTTTTAGATTTGTTTGTA ATTAGTGGTATTCTGGACATGTATCTGAAATGTGGAGAGATGGAAAGTGCACGCAAAGTTTTCAGTGGGATCCCTTGGCC AGATGATGTGGCATGGACCACTATGATTTCAGGTTGTGTGGAAAATGGGGAGGGGGAGCATGCTCTTTCTACATACCATC AAATGAGACATGCTGGGGTACAACCTGATGAGTATACCTTTGCTACCCTAGTCAAGGCTAGCTCTCTTTTAACAGCTTTG GAACAGGGGAAACAGATTCATGCAAATGTCATAAAGTTGAACTGTGCTTTTGATCCTTTTGTCATGACCTCACTTGTTGA CATGTATGCCAAGTGTGGGAACATAGAAGATGCATATGGTTTGTTTAAGAGAATGGACACAAGGACTATTGCCTTGTGGA ATGCTATGATAATAGGGTTAGCTCAATATGGGAATGCTGAAGAAGCCCTCTACTTTTTCAAAGATATGAAATCTAAGGGT GTTACCCCAGATAGAGTTACTTTTATAGGGGTCCTTTCAGCGTGTAGTCATTCTGGTTTGATATCTGAAGCCTATGAAAA TTTTTATTCTATGCAGAAAGACTATGGAATTGAACCTGAGATTGAGCACTATTCTTGTCTTGTGGATGCCCTTAGTCGTG CGGGTTGCATACAAGAAGCTGAAAAGGTGGTATCATCAATGCCTTTTGAAGGTTCTGCTTCAATGTATAGAACTTTGCTC AATGCTTGTAGGGTTCAGGGAGACCAAGAGACTGGAAAACGCGTAGCAGAAAAGCTTTTTACCTTGGAGCCATCTGATTC TGCGGCTTATGTTCTTTTATCCAATATTTATGCAGCTGCTAACCAATGGGAAAATGTGGTGAGTGCTAGAAATATGATGA AAAGGGTAAATGTAAAGAAGGATCCAGGATTTAGTTGGGTAGATATCAAGAACAAGGTGCATTTATTTGTAGCTGGAGAT ACATCGCATGAAGAAACTGATTCAATATATAAAAAGGTGGAATGTGTTATGAAAAGGATCAGGGAAGAAGGATATGTCCC TGATACAGACTTTACACTTGCTGATATAGAAGAAGAAGATAAAGAAAGTGCTTTGTACTATCATAGTGAGAAGTTAGCAA TAGCTTACGGGCTCCTAAAAACTCCCCCATCCACCACATTAAGGATAATTAAAAACCTTAGAGTATGTGGAGATTGCCAT AACGCAATCAAATATATATCGAAGGTTTTTCAGCGAGAGATCGTTTTGAGAGATGCAAATCGATTTCATCGTTTCAGGAG TGGGAGCTGCTCTTGTGGTGATTACTGGTGA
Protein sequence (LotjaGi1g1v0372200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYAKCGSLSSARQLFDTTPEHDRDLVTWNSILAAYARAGELDGEKTQEGFRLFRLLRQSVELTTRHTLAPLFKMCLLSGS PSASETLHGYAVKIGLQWDVFVAGALVNIYAKFRRIRDARVLFDRMPLRDVVLWNVMLKAYVEMGFGDEALRLFSAFHRS GLRPDGISVRTLLMGFGQKTVFDKQLNQVRAYASKLFLCDDESDVIVWNKTLSQYLQAGEPWEAVDCFKDMVKSRVPYDS LTLVVIMSAVASVNHLELGKQIHGVVVRLGMDQVVSLANSIINMYVKAGSVNYARIVFSQMKEADLISWNTVISGCALSG LEELSTSLFIDLLRTGLLPDQFTIASVLRACSSLRESYYLARQIHTCALKAGIVLDSFVSTALIDVYSKSGKMEEAGLLF HSQDGFDLASWNAMMHGYIVSYNYREALRLFSLMYKSGERVDQITLANAAKAAGCLVGHGQGKQIHAVVIKRRFVLDLFV ISGILDMYLKCGEMESARKVFSGIPWPDDVAWTTMISGCVENGEGEHALSTYHQMRHAGVQPDEYTFATLVKASSLLTAL EQGKQIHANVIKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFKRMDTRTIALWNAMIIGLAQYGNAEEALYFFKDMKSKG VTPDRVTFIGVLSACSHSGLISEAYENFYSMQKDYGIEPEIEHYSCLVDALSRAGCIQEAEKVVSSMPFEGSASMYRTLL NACRVQGDQETGKRVAEKLFTLEPSDSAAYVLLSNIYAAANQWENVVSARNMMKRVNVKKDPGFSWVDIKNKVHLFVAGD TSHEETDSIYKKVECVMKRIREEGYVPDTDFTLADIEEEDKESALYYHSEKLAIAYGLLKTPPSTTLRIIKNLRVCGDCH NAIKYISKVFQREIVLRDANRFHRFRSGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 24 | 59 | 36 | 7.366 | ||
| Pfam | 26 | 42 | 17 | 0.17 | ||
| Gene3D | 43 | 201 | 159 | 9.9E-19 | ||
| PANTHER | 50 | 183 | 134 | 3.7E-146 | – | |
| ProSiteProfiles | 99 | 129 | 31 | 7.224 | ||
| Pfam | 105 | 129 | 25 | 0.4 | ||
| ProSiteProfiles | 130 | 164 | 35 | 11.663 | ||
| Pfam | 132 | 161 | 30 | 3.8E-4 | ||
| TIGRFAM | 132 | 165 | 34 | 4.1E-5 | ||
| ProSiteProfiles | 204 | 238 | 35 | 8.78 | ||
| Gene3D | 206 | 356 | 151 | 2.2E-24 | ||
| Pfam | 207 | 235 | 29 | 0.025 | ||
| ProSiteProfiles | 239 | 273 | 35 | 5.36 | ||
| PANTHER | 242 | 353 | 112 | 3.7E-146 | – | |
| ProSiteProfiles | 274 | 304 | 31 | 6.971 | ||
| Pfam | 279 | 304 | 26 | 0.019 | ||
| ProSiteProfiles | 305 | 339 | 35 | 9.482 | ||
| Pfam | 307 | 336 | 30 | 0.064 | ||
| ProSiteProfiles | 340 | 375 | 36 | 5.7 | ||
| Gene3D | 357 | 456 | 100 | 1.3E-12 | ||
| PANTHER | 361 | 452 | 92 | 3.7E-146 | – | |
| ProSiteProfiles | 376 | 406 | 31 | 6.467 | ||
| Pfam | 381 | 401 | 21 | 0.021 | ||
| ProSiteProfiles | 407 | 441 | 35 | 9.865 | ||
| Pfam | 410 | 438 | 29 | 4.1E-4 | ||
| TIGRFAM | 410 | 442 | 33 | 5.5E-5 | ||
| PANTHER | 454 | 555 | 102 | 3.7E-146 | – | |
| Gene3D | 457 | 557 | 101 | 2.0E-18 | ||
| ProSiteProfiles | 477 | 507 | 31 | 5.711 | ||
| Pfam | 507 | 553 | 47 | 7.3E-12 | ||
| ProSiteProfiles | 508 | 542 | 35 | 11.663 | ||
| TIGRFAM | 510 | 544 | 35 | 8.4E-9 | ||
| ProSiteProfiles | 543 | 577 | 35 | 5.514 | ||
| PANTHER | 554 | 774 | 221 | 3.7E-146 | – | |
| Gene3D | 558 | 663 | 106 | 3.9E-22 | ||
| ProSiteProfiles | 578 | 608 | 31 | 9.383 | ||
| Pfam | 582 | 607 | 26 | 1.4E-4 | ||
| TIGRFAM | 583 | 607 | 25 | 0.0021 | ||
| SUPERFAMILY | 585 | 767 | 183 | 1.09E-5 | ||
| ProSiteProfiles | 609 | 643 | 35 | 11.772 | ||
| Pfam | 610 | 656 | 47 | 4.5E-10 | ||
| TIGRFAM | 612 | 644 | 33 | 2.2E-8 | ||
| ProSiteProfiles | 644 | 679 | 36 | 8.298 | ||
| Gene3D | 664 | 824 | 161 | 2.1E-13 | ||
| ProSiteProfiles | 680 | 714 | 35 | 8.484 | ||
| Pfam | 683 | 711 | 29 | 0.0087 | ||
| TIGRFAM | 684 | 711 | 28 | 0.0016 | ||
| ProSiteProfiles | 746 | 780 | 35 | 6.654 | ||
| Pfam | 782 | 906 | 125 | 6.1E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0372200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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