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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0374700 |
| Transcript ID | LotjaGi1g1v0374700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein family; TAIR: AT4G10720.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q8GYH5|BAD1_ARATH Ankyrin repeat-containing protein BDA1; TrEMBL-Plants: tr|I1JU42|I1JU42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85283442..85285603) extracted from Lotus japonicus Gifu genome v1.2.
GCAAATTGCCATCATCAAAACCCAAATCTTCAAATAAAAAGCTAGATAATTAAAGTGCAGCCTTTCCTTAACTAACTACA CATTTTCCTTTTAAATTCTAATTTGCTCACATACATCATGAATGACCCATTGAAGGCAGCTTCACAAATGGGAGATATAG ACTTTCTCTACAAACTGATTCAGATGGAACCATTTCTGTTGGAGCACACTGATTTGATCCCATTTGTTGATACTCCTCTG CATATTGCTGCTGCTGCTGGGCATGCCAGTTTTGCCACTGAGATTATGAGACTCAAACCTTCCTTTGCTTGGAAGTTGAA TCCCTATGGTCTCAGCCCCATGCACCTTGCTTTGCAAAACAAACATTACAGAATGGTTCAACGCTTCGTCTACATTGACA AGGACCTCGTTCGAGTGAAAGGGAGGGAAGGCCTTACCCCTTTACATGTTGTAACTCAAGCTGGAAAAACTGATCTCATA GTTAAATTCTTATCAGCATGTCCAGGTTCCATTGAAGATGTCACTGTTCAGAGTGAGACTGCTCTTCATATTGCTGTGAG ATATCAACAGTTTCAGGCACTGGAGGTCTTGCTCGGCTGGCTTCAGAGGACCTGCCATAAACATGCTCCCAAACAGGAAA AACGGGTTCTCAACTGGGAGGATGAGGCAGGAAACACTATTCTCCACATTTCAGTTCTCCAAGGATTCCCACAGGTATGT CATGTATCCTCTGATATCCTTCATTTTTATTCTCATTAGAAATATAATATAAAATCATTCGTATGTTTTCACATAACAGT TTAAACTTTTTAAATAGTTGTTCATGGTAATGTATTAGAGCTTTTAAATCCTTGTTACCCTTATTATTCTAATAAAAAAT TAAAAATTCAACTAAGACCAATAGACTCTTGTTGAGAGGGTTGTTAGAAATATAGTATAAAATATTTTTATGTGTTTTCA CCTAACCACTTATATCATCAAGTTTCAATTAATTAATTCAGCTACCATATTCAGGGACAGAATCAAAAAATGGGGCAATC ATCCCCAAAAGCAAAGAAAAGTATCTCAGCAGTGTTCTAACTTCTAATTACCCCCTCAAAAAATTTACTCTGCATCCTTC AAGTAACCATTGTTGATTTTGCTTTATATGTAACAAATTTAGCCCCTACTCATTTTTCCTAGCTACCGCCCTGGTATTAA TATTGTAGATTTTCATCCATATGTGCAGGCAGTTAGATTGTTGATAGATACCAAGATAGACTTAAATGTTAAGAATTTGG AGGGTTTAACAGCATTGGACATAGTGGAGATGCATCAGACACACCCTTACAGTGCAGAGATCAGGGACATGATAGTTACA GCAGGAGCTTTACATGGTTTTTCACTTTCTGCTGCAGCACCCTGTGAACAAGAGCTAAGATCCAAAATCACATTCAATGA GAGAGTAGCAATTTGCGCTACTCGCCTCAGAAGGAGAATATCAAACGACACGCGCAATGCTTTGTTGGTTGTAGCTATTC TTTTCGCGACAAGCACATATGATGCAGCACTTAACCCTCCTGGTGGCGTTTACCAGTCTGATAGTAGTAGTACTGCTTCA TATAAGAGGACCGGTCTCAGGCCTGCTAGTAATAGTCATGGTGATAGAGTGCAAGAAAATCTTGGGAAAGTGGTGATGAA GATTCAAACATTCTTTTGGTTCTGGTCATTCAATACATGTTCCTTCTATCTTTCAATTTTGATGATATGTTTGCTAATGC CTAGAGGGCGCATCAGTGTTATAGTGACTTCTCCACTCATTCTATTTTCTGGTTGCTATGTCTTCTCCATGCTGGTCATA TCACCTAGTGTTAAGTGTACCATTGCCACAGTTGCTCTGCCATGCATGCTTATGTTATTCTACTGTTGGGGAACTTCAGT GTACATTAGATTAGCCAAAAAGCTTAGAAATTATGGTAATCAACATGAAGACAAGTCCAGGTTTTCAGGGGGAAACAGAT GGTAATGGTATGGTATAAATATGTTGCATCTTGTAACACTTACACTTGACAAGAATGTCTCTAATTGGTTACACCATGTA CAAGTCTATACTCAAAACAGCATTTTTTCTGCTTAAATATGTCATAGCTCAATAATTAATTCCCCCTTTAATCACCCACA TT
CDS sequence (LotjaGi1g1v0374700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGACCCATTGAAGGCAGCTTCACAAATGGGAGATATAGACTTTCTCTACAAACTGATTCAGATGGAACCATTTCT GTTGGAGCACACTGATTTGATCCCATTTGTTGATACTCCTCTGCATATTGCTGCTGCTGCTGGGCATGCCAGTTTTGCCA CTGAGATTATGAGACTCAAACCTTCCTTTGCTTGGAAGTTGAATCCCTATGGTCTCAGCCCCATGCACCTTGCTTTGCAA AACAAACATTACAGAATGGTTCAACGCTTCGTCTACATTGACAAGGACCTCGTTCGAGTGAAAGGGAGGGAAGGCCTTAC CCCTTTACATGTTGTAACTCAAGCTGGAAAAACTGATCTCATAGTTAAATTCTTATCAGCATGTCCAGGTTCCATTGAAG ATGTCACTGTTCAGAGTGAGACTGCTCTTCATATTGCTGTGAGATATCAACAGTTTCAGGCACTGGAGGTCTTGCTCGGC TGGCTTCAGAGGACCTGCCATAAACATGCTCCCAAACAGGAAAAACGGGTTCTCAACTGGGAGGATGAGGCAGGAAACAC TATTCTCCACATTTCAGTTCTCCAAGGATTCCCACAGGCAGTTAGATTGTTGATAGATACCAAGATAGACTTAAATGTTA AGAATTTGGAGGGTTTAACAGCATTGGACATAGTGGAGATGCATCAGACACACCCTTACAGTGCAGAGATCAGGGACATG ATAGTTACAGCAGGAGCTTTACATGGTTTTTCACTTTCTGCTGCAGCACCCTGTGAACAAGAGCTAAGATCCAAAATCAC ATTCAATGAGAGAGTAGCAATTTGCGCTACTCGCCTCAGAAGGAGAATATCAAACGACACGCGCAATGCTTTGTTGGTTG TAGCTATTCTTTTCGCGACAAGCACATATGATGCAGCACTTAACCCTCCTGGTGGCGTTTACCAGTCTGATAGTAGTAGT ACTGCTTCATATAAGAGGACCGGTCTCAGGCCTGCTAGTAATAGTCATGGTGATAGAGTGCAAGAAAATCTTGGGAAAGT GGTGATGAAGATTCAAACATTCTTTTGGTTCTGGTCATTCAATACATGTTCCTTCTATCTTTCAATTTTGATGATATGTT TGCTAATGCCTAGAGGGCGCATCAGTGTTATAGTGACTTCTCCACTCATTCTATTTTCTGGTTGCTATGTCTTCTCCATG CTGGTCATATCACCTAGTGTTAAGTGTACCATTGCCACAGTTGCTCTGCCATGCATGCTTATGTTATTCTACTGTTGGGG AACTTCAGTGTACATTAGATTAGCCAAAAAGCTTAGAAATTATGGTAATCAACATGAAGACAAGTCCAGGTTTTCAGGGG GAAACAGATGGTAA
Protein sequence (LotjaGi1g1v0374700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDPLKAASQMGDIDFLYKLIQMEPFLLEHTDLIPFVDTPLHIAAAAGHASFATEIMRLKPSFAWKLNPYGLSPMHLALQ NKHYRMVQRFVYIDKDLVRVKGREGLTPLHVVTQAGKTDLIVKFLSACPGSIEDVTVQSETALHIAVRYQQFQALEVLLG WLQRTCHKHAPKQEKRVLNWEDEAGNTILHISVLQGFPQAVRLLIDTKIDLNVKNLEGLTALDIVEMHQTHPYSAEIRDM IVTAGALHGFSLSAAAPCEQELRSKITFNERVAICATRLRRRISNDTRNALLVVAILFATSTYDAALNPPGGVYQSDSSS TASYKRTGLRPASNSHGDRVQENLGKVVMKIQTFFWFWSFNTCSFYLSILMICLLMPRGRISVIVTSPLILFSGCYVFSM LVISPSVKCTIATVALPCMLMLFYCWGTSVYIRLAKKLRNYGNQHEDKSRFSGGNRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 256 | 256 | 1.4E-34 | ||
| Phobius | 1 | 289 | 289 | - | – | |
| ProSiteProfiles | 1 | 222 | 222 | 26.841 | ||
| PANTHER | 3 | 439 | 437 | 9.6E-146 | – | |
| PANTHER | 3 | 439 | 437 | 9.6E-146 | – | |
| SUPERFAMILY | 4 | 229 | 226 | 5.39E-32 | ||
| SMART | 36 | 65 | 30 | 31.0 | ||
| SMART | 70 | 99 | 30 | 4.4 | ||
| SMART | 104 | 134 | 31 | 5.8 | ||
| Pfam | 104 | 159 | 56 | 8.6E-7 | ||
| ProSiteProfiles | 104 | 125 | 22 | 8.763 | ||
| SMART | 138 | 168 | 31 | 1400.0 | ||
| Pfam | 176 | 224 | 49 | 8.7E-9 | – | |
| SMART | 184 | 213 | 30 | 0.054 | ||
| ProSiteProfiles | 184 | 216 | 33 | 10.045 | ||
| Pfam | 285 | 378 | 94 | 1.5E-13 | ||
| TMHMM | 290 | 307 | 18 | - | – | |
| Phobius | 290 | 307 | 18 | - | – | |
| Phobius | 308 | 354 | 47 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 355 | 376 | 22 | - | – | |
| Phobius | 377 | 382 | 6 | - | – | |
| TMHMM | 381 | 403 | 23 | - | – | |
| Phobius | 383 | 404 | 22 | - | – | |
| Phobius | 405 | 409 | 5 | - | – | |
| Phobius | 410 | 432 | 23 | - | – | |
| TMHMM | 413 | 435 | 23 | - | – | |
| Phobius | 433 | 457 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0374700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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