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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0381800 |
| Transcript ID | LotjaGi1g1v0381800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-5; TAIR: AT5G11100.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|A0A0R0JHJ4|A0A0R0JHJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0381800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86470509..86477140) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGCTCAACACGTTCACATATTACTTTAGCAATAATCAATGAATATTTACATTAGAATTTATTTACTTACTTACATTA ATGACACGAATTTGAATGATTAATTGAATAATTAATGGTTCTGGTTAGTGATTACCCGCGCGTACATCCACATCCTCAAC GCAACGTAACTAACTCTTCAACAGACACTCTTTCTTCTCCCTCTCTCTTCATCTTCCTCTGTTTCTTTCTTCAGTGATCG ATGAACGAGATGCTTGAGCTGAAACGACGACATTTCACAATCTTCAATTAGAAGTTAATTTCCGTTGCGAAAATGGGATT CATCAGCGGCATGATCGTCGGTGTCGCCGTCGGAATCGGATTGATCGTCGCTTACGCTCGTCACGAGAGTTTCCGATCCA AGCGTCGTTCCGATTTGGTATGTAAAAACCAAAATCCACATTCATTGCATTCTAACTCGTTAGCTTCCTTTGTACGCATC ATGGTTTGGTTTTTGTGAATGGCTTTTAGGCTAAGACAATTGCAAGGTTTGCGAGGATGACGGTGGAAGATTCCAGAAAG CTTCTTCTTCCTAAGTTCTATCCGTCATGGGTGGTTTTCACTCGGAGACAGAAGTTGAGTTCACTGCACTTCAAATTTTC AGCGAATGCGGACGGAGTAACTTTAATTTTGATCTGGATTCTGATGTTAATTTGTTCATTTTCTGCAGTTAAATTGGCTT AATAGCCAATTAAGCAAGCTGTGGCCATATATTAATGAGGTTCTTAATTTGATTTGGTTTTTCATTTGCTAAGTTTGTTG ATATAATGATATGTATTAATTGAATGAATCTAGCTAGAGTTTTGATGTAATGTGGAAATGTGCTTAGGCGGCGTCGGAGT TGATTAGAAGCAATGTTGAACCCATTCTTGAACAATATAAGCCAATTGTTTTGTCATCTCTCACCTTCTCCAAGTTGACC CTTGGCACTGTGGCTCCACAATTTACAGGTTAGCTACATTACTAATAATGAGTAAGCCTTAGATTTTGTATTCGCATGCT ATATCTGGTGGCTTGTTATTAGTTAGTACTTAGTAATGTAAAAAATTGAAAACATTGATAATTCTGGCTCATGCTTGTGC TTCTGGATTCCACCGTCCCTGGTACATTAGGGCTTATAATCAAGTTCAACAAATTTAAGAGAGTCGGACGGTGTCCAATT TATTAATATTAAATGTTGGTTTTGTTCATCTCTGCAATTTCGTGCTGATACTGATATATGCTGCTTGAACTATCTAGGAA TTGAAATTGTCGATGAGGATAGTGGGCCTAATGGAGTGACCATGGAGCTAGAGATGCAGTGGGATGGTAACCCGAATATA GTTCTTGACATCAAAACCAAAGTTGGTGTTGTAATTCCTGTGCAGGTGATATATAAATCATTGCCCTCTTCTGACTTTTT TGTATGCTGATGATATTTTCTAATAAGTTGTACTCAATAACCTTAGCTGGCTGCCAAATTGTTTGTATTAGGATGGCTTT GTGCATTAACTTTAAATCTTAACCATCTTTCCAAGAGAAAGAAGATGAAGCAATCAACCTTTTTGACTGATGAACATATA AATTTCTATACATAACAATACTTGATAGTCCTACTCTATTTTGTTTTGTTTCCTTTTATTGTTAATGAGTTGCGTTGCGT CTATCAAAGAATAAATTCTATGAAATGGTTATGCCATGTAGTTTGTTCATTGAATTTTATCTTGCTTTCATCTAATACCT AAATGTCCTTTAACTTCCATGCCAAACTTCCCCGAGGTTTTAGTGAACTGGATGGTTGAGAATGCTATCGCTGCTTCCTT GAATTGAGAAGATAACAGTATAGGCAGTACTCCGATTCTTTAGTTCATAATAGAAGTAGAAAATATTATAAGAGGAGAAA GTTGTTCATACCAGGAGGCGCCCCCTTCTATTTATAAGGAACCTACTATCATTTTAGTCCATTCTATCTCTTTCTGTAAT TCTAAAGTCTTAGTGACCTCATTAATGTCTGTAAATGTCAACATTTAAGTAATTCCTTATCATTCTGTTCTGTCTTCCCT GGCAACTTGTTTATATAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCGCTTGTAAATGAGTT TCCTGGTTTTGGAGCTGTGTGTTTTTCCTTGAGAGAAAAGGTGAGTTATATTGTCTTGTGACTTATACTTTCATTACTCA ATAAAAGACAATATCTCGACATTTATTTATCAAAGAATTATTTCAGCATGTTGAAGATAGGATGAGTTACCCAACATTGT TTACCGATACCTATGCTTTTTGTTGTCAAGTAACTGGAAACAAATATGAGAAAGCTCAAGCTTTCTTCGCAAGTTGGATT TTGGAGGGGCGGGAATGGAAAGGGGAGGCTCATGAGAAGCCCTCCTCTTGTTTGATAGCTTTGTAAGAAAGGGATAAACT TTGAAGAATTTTTTAAAATCCTTCAAACTCCTCAAAGACCTTCCTTTAGCTATTTTGTGAAGCTCCCCCAAATTGGAGGT TTTTGAAGAATTATGAACTTCCGAACAAGGGGAGGGATTACCCTCCCTTCCCCTTTTCTTTCCCCTCCCCTTCCTTTACC GTCAAAGCCTTCACATTCCCTCTCTAAAAAACTCCCAAAAAAAGCCTAAAGAAAAACGAGCAGTTAATGAGTTTGTTCAA ATATTTGTAAATTAAAAATTCCAACTATTTATATTTCATGTTTTTATTTGTTCTGCCAACAGAGAGATCTGGATTTTACT CTCAAAGTGGTTGGTGGTGACATATCAGCTATACCGGGGATATCTGATGCCATAGAGGTATAAGCAAATTATACATAGTT TTGTGGTACTGATATTTTTCCTTTGACTAATGTTACTTAGTTTGCACATGCTATACTACCATGCACCTGATCTTCATGTG TAACAGGATTTGGTAGTTATGTAATAAATTAATAATCAGGCACTGCCATTTTCTTTATTCTGTTTAAAATCTTTATGACA TATCAAAAGTTTTGATAGGTAATTTCTTCGCAGATGGTGAAGATAAATTCCATGCCAAGAAGCATTTCTTTTCTTTTATA CTCTTCCCCCCTATTTTTTCAGGAGATCTTGAACTTTGGTTCTGAAATTTTGTTAACATTCATGTATATGTATGTCTGAG TCCCAAAGGTTTGAACAGAGTGTGCAATATAGTCCTAATGCATTGTAATGTAAATCACGGAGAAGTATAATCAATTACAA AAGTTAGGTATATTAATCCTGCATTGCATTGTCAATAACTTGCTAACTCATACAACACTCTACCTCAGTAATAAACTCCT CTGTTAATTATTCAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTAT ACCTGGGGACTACAGGTATCTAACAGTTCGTTACTATTTTCTTCCAGTAGGAGGACAAAATTATTTATTTAGGAGCTGAT AGTGATGTATGGATCTGAATCAGTTTTCTGCTTTGGTGACTGCAACCTGTCTTGTAATGGCAAGTAAATCCTTAAGCATG TGCAGTTATGCATCTTCATATATCAATGAAGAGCTAGAAAGTTGACACTGCTAGAAGGAATTATAGCAGTTAGTCTACTT TCACTAGGCTAGCCAAATGAAAACTATATTCTAGGCTTCTGTAAATTAATGTCACATTTGTTCCAAAATGTCTTTAACCT TTATTTCTGCCATCATCTTCTGTGTCATTTTCATCACATGTAGCATAGCATGCATATCATTTATGTGTACTTTATTGCTG TTTCTTTTTTATTTCTTTAATTCAAACGCTACATGATTGTTCTTCCTTTCACAGCAACCTAGAATTGAAACCGGTTGGAA CATTGGAAGTAAAACTAGTGCAAGCAAAAAACTTAACAAATAAAGATCTGATTGGGAAATCCGATCCTTATGCTACCGTA TTTGTACGCCCTCTTCGTGAGAGAACAAAAACCAGTAAAACAATCGTAAGACTAACTCTCTTTCCAATGGAAGCTTCCTT TATTTTAATTTATTTATTGTTGTGTTGGTTAATCCATTTGCTTGGTATGTTCAGAACAACCAGCTGAATCCAATATGGAA TGAGCACTTCGATTTCATTGTCGAAGATGCATCAACCCAGCACTTGACCATAAGAATTTTTGATGATGAAGGAGTTCAAG CATCTGAGCTTCTTGGCTGTGCCCAAATTCCGCTGAAGGAACTCGAACCTGGTAAAGTAAAGGATGTATGGTTGAAATTG GTGAAGGATCTGGAAATCCATAGAGATAACAAATACAGGGGTGAGGTAAGATAGTTTATTCTTAGTGTCTTCATTACATT CATCTGGCATTCTAGATTCTAACTGATCAATACCAAGGAAATTACTAAAAGTTACATTACTAAACACAAGAAGAGGACCC ATGATTACCGCCAAATAACATAATTTAGCTTTGACACATCAGCATTTCTTCCGATTTTCCTTTGTAAAATCATTGCTGTA AATGTAATGACCAATTAATGTAGAGCTTAGCCGTTTGCCATGAGTAGAATACTAAACCATGGCTTTCAAGTTTATCAAGT ATATTATAAAATGGTCAATATAGGGGGTGTGTGTATGAAATAAGAAAGTTCTAGGCACAAGTTTGATCTATAATGACCTT AGAATCTGGTAAACTTGTTACTTGTGCTCTTTGTTATATTATCACATACTTGTATCTTAGTATTCTATTCATGGAAATTC AGATTATAGCAGTTCATAAACCTTCTTTAGTATATTATACCTCATATAGGTGCAGTTGGAGCTCTTGTACTGCCCATTTG GGGTTGATACCAACTTTAAGAACCCTTTTGACCCTGAGTACTCATTAACCACGTTCGAGAAGACCCTTAAGAGTGGAGTA GTTGACGCAGAGGATGAGGATCTTACAAAAGCATCACCATCACGGAGGAGAAGCAACGTGATTGTAAGAGGTGTTCTATC TGTAACAGTGATTTCAGCTGAAGACTTGCCAGTAGTGGACTTCATGGGCAAAGCTGATCCATTTGTCGTCCTAATGTTGA AAAAATCAGAAAAGAAACTGAAGAGCAGGGTAAGATTTAGGATAATCTCGGTCTGAAACATTTTTGTATATCAGTGTTTA ACTAATTTTTTGTCTAGAGCAATATAAATTTGAATAATTAATTGATTAACAACCTGAAGTAGTTGAGTGCAAATTAGTTA AAAACGTATTAAGTTGATTGTATTTGTATACACTGGTTTTCATATACTTGTAATGGACTGAATAATAATTCCTTATTCTC AGGTTGTAAATGAATCCCTAAACCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGCTTGCACGAAATGTTA ATTATTGAAGTCTGGGATCATGATACGTTTGGCAAGGTGATACCTCTTTAATTTTCTATTTAACTTGTTTGTTTCTAAGT ACTGCTTGATTTCAAACATAATTCAACAACTCTGTTTTCTTTGCCACAACTCAATTTTTTACATCTATATTACATTTCTT TATATTTCTCTCTACTTTCTTTTCATATATCACTTGTTAAGCCTCCCATTATTTCTTTCTTTCGTCCACGATGCCTATTT ATCCAGAGTTAAAAAAACTCCTATTAATTAACACTTAACAGAAGTTACTTTCTTTGTTAAGTTGTGAAAAGAAGGGTGTT TCATGTGCTTTCTGAATGAGAAGTTTGTTCACAAAACACTCTCTAGCACACTATTTCAAATTCTCTGAATATTATACTGC ACTTTTTTATAACTATCGAAATGCATGAATTTTTCAGGAAAAAATGGGAAGAGTGATCATGACACTGACTAAGGTCATCT TAGAAGGGGAATACGATGAAACTTTTCCTCTAGATGCAGCTAAATCCGGGAAGATCACTTTGCATCTGAGGTGGACTCCC CAGCATAAGTACCGGGATCCTTAGTAGACTTTCTAGTTTCTACACGTTTGTTGTAATTTATTTTCTTAAAAAAGTGGTTT TTTTTAGAAATGATTTTTCATAAATACAAACACAAAATTTGCTGGTTGTGCAATACAACACAGTTGTCATGAGGGAATCA GAATCTGTAGTCCAATTTCTACTTGTGTTATTTTGGCAATTTGGATTTGGCAATTGGCACACCGCACACACACTCCAATT TCTGCTTGATTATCTAAGTCAGAGATGAAAATTGGTAGACCATTTTCAAAACATGTGGTTTAACTTAAACCAGATTCAGG TTAGACCAAATATATTTATTAAAGGCTTAAATATATTTGTATTCTCTATATAATAGGATTATCTTTTAAGCAAATAGATG GTTTTAGTCTCTGTCGTTGACTCCTGTTAAAAAATGTTGTGACGTGACTAACAAAGTTCTACATCAATATTTGACACACC AATGATCTTATGTGACATCCTACATTATTTTTTTCATCCAATTGACCTTAAATGTAAGGACTAAAACCAAATGACTCATT CTTTTAGGGCTAAGCACACAGGGGTCCCTCCATTTTCAATTCACCGCCTTCTGTAAGCACCACACCTTCTTC
CDS sequence (LotjaGi1g1v0381800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTCATCAGCGGCATGATCGTCGGTGTCGCCGTCGGAATCGGATTGATCGTCGCTTACGCTCGTCACGAGAGTTT CCGATCCAAGCGTCGTTCCGATTTGGCTAAGACAATTGCAAGGTTTGCGAGGATGACGGTGGAAGATTCCAGAAAGCTTC TTCTTCCTAAGTTCTATCCGTCATGGGTGGTTTTCACTCGGAGACAGAAGTTAAATTGGCTTAATAGCCAATTAAGCAAG CTGTGGCCATATATTAATGAGGCGGCGTCGGAGTTGATTAGAAGCAATGTTGAACCCATTCTTGAACAATATAAGCCAAT TGTTTTGTCATCTCTCACCTTCTCCAAGTTGACCCTTGGCACTGTGGCTCCACAATTTACAGGAATTGAAATTGTCGATG AGGATAGTGGGCCTAATGGAGTGACCATGGAGCTAGAGATGCAGTGGGATGGTAACCCGAATATAGTTCTTGACATCAAA ACCAAAGTTGGTGTTGTAATTCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCGCT TGTAAATGAGTTTCCTGGTTTTGGAGCTGTGTGTTTTTCCTTGAGAGAAAAGAGAGATCTGGATTTTACTCTCAAAGTGG TTGGTGGTGACATATCAGCTATACCGGGGATATCTGATGCCATAGAGGAAACAATTCGAGATGCCATTGAAGACTCTATA ACTTGGCCAGTACGCAAAATTATACCAATTATACCTGGGGACTACAGCAACCTAGAATTGAAACCGGTTGGAACATTGGA AGTAAAACTAGTGCAAGCAAAAAACTTAACAAATAAAGATCTGATTGGGAAATCCGATCCTTATGCTACCGTATTTGTAC GCCCTCTTCGTGAGAGAACAAAAACCAGTAAAACAATCAACAACCAGCTGAATCCAATATGGAATGAGCACTTCGATTTC ATTGTCGAAGATGCATCAACCCAGCACTTGACCATAAGAATTTTTGATGATGAAGGAGTTCAAGCATCTGAGCTTCTTGG CTGTGCCCAAATTCCGCTGAAGGAACTCGAACCTGGTAAAGTAAAGGATGTATGGTTGAAATTGGTGAAGGATCTGGAAA TCCATAGAGATAACAAATACAGGGGTGAGGTGCAGTTGGAGCTCTTGTACTGCCCATTTGGGGTTGATACCAACTTTAAG AACCCTTTTGACCCTGAGTACTCATTAACCACGTTCGAGAAGACCCTTAAGAGTGGAGTAGTTGACGCAGAGGATGAGGA TCTTACAAAAGCATCACCATCACGGAGGAGAAGCAACGTGATTGTAAGAGGTGTTCTATCTGTAACAGTGATTTCAGCTG AAGACTTGCCAGTAGTGGACTTCATGGGCAAAGCTGATCCATTTGTCGTCCTAATGTTGAAAAAATCAGAAAAGAAACTG AAGAGCAGGGTTGTAAATGAATCCCTAAACCCAGTATGGAATCAAACATTTGACTTTGTTGTGGAGGATGGCTTGCACGA AATGTTAATTATTGAAGTCTGGGATCATGATACGTTTGGCAAGGAAAAAATGGGAAGAGTGATCATGACACTGACTAAGG TCATCTTAGAAGGGGAATACGATGAAACTTTTCCTCTAGATGCAGCTAAATCCGGGAAGATCACTTTGCATCTGAGGTGG ACTCCCCAGCATAAGTACCGGGATCCTTAG
Protein sequence (LotjaGi1g1v0381800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFISGMIVGVAVGIGLIVAYARHESFRSKRRSDLAKTIARFARMTVEDSRKLLLPKFYPSWVVFTRRQKLNWLNSQLSK LWPYINEAASELIRSNVEPILEQYKPIVLSSLTFSKLTLGTVAPQFTGIEIVDEDSGPNGVTMELEMQWDGNPNIVLDIK TKVGVVIPVQVKNIGFTGVFRLIFKPLVNEFPGFGAVCFSLREKRDLDFTLKVVGGDISAIPGISDAIEETIRDAIEDSI TWPVRKIIPIIPGDYSNLELKPVGTLEVKLVQAKNLTNKDLIGKSDPYATVFVRPLRERTKTSKTINNQLNPIWNEHFDF IVEDASTQHLTIRIFDDEGVQASELLGCAQIPLKELEPGKVKDVWLKLVKDLEIHRDNKYRGEVQLELLYCPFGVDTNFK NPFDPEYSLTTFEKTLKSGVVDAEDEDLTKASPSRRRSNVIVRGVLSVTVISAEDLPVVDFMGKADPFVVLMLKKSEKKL KSRVVNESLNPVWNQTFDFVVEDGLHEMLIIEVWDHDTFGKEKMGRVIMTLTKVILEGEYDETFPLDAAKSGKITLHLRW TPQHKYRDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 568 | 568 | 0.0 | – | |
| PANTHER | 1 | 568 | 568 | 0.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 2 | 24 | 23 | - | – | |
| Phobius | 6 | 22 | 17 | - | – | |
| Phobius | 23 | 569 | 547 | - | – | |
| ProSiteProfiles | 67 | 251 | 185 | 30.283 | ||
| Pfam | 70 | 250 | 181 | 8.3E-16 | ||
| ProSiteProfiles | 251 | 350 | 100 | 15.918 | ||
| Gene3D | 260 | 398 | 139 | 1.6E-31 | ||
| SUPERFAMILY | 262 | 393 | 132 | 1.93E-30 | – | |
| Pfam | 264 | 368 | 105 | 3.0E-24 | ||
| SMART | 265 | 365 | 101 | 1.1E-23 | ||
| CDD | 266 | 368 | 103 | 1.56831E-26 | – | |
| SUPERFAMILY | 440 | 563 | 124 | 6.55E-32 | – | |
| ProSiteProfiles | 441 | 528 | 88 | 15.814 | ||
| Gene3D | 442 | 568 | 127 | 4.8E-34 | ||
| Pfam | 444 | 546 | 103 | 3.9E-24 | ||
| SMART | 445 | 543 | 99 | 3.1E-21 | ||
| CDD | 446 | 546 | 101 | 3.6731E-21 | – | |
| PRINTS | 461 | 473 | 13 | 4.3E-6 | ||
| PRINTS | 487 | 500 | 14 | 4.3E-6 | ||
| PRINTS | 509 | 517 | 9 | 4.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0381800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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