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LotjaGi1g1v0382900.1

Overview

Field Value
Gene ID LotjaGi1g1v0382900
Transcript ID LotjaGi1g1v0382900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:86633021..86636671) extracted from Lotus japonicus Gifu genome v1.2.

AAACGCATCAGACAAAATCCCCCCACACATTCGTTCCTTGCTCCCACCGACGCCCCAGATTTAAATTCACAACTCCTCCA CCGCACCACCACTCCACGTGTCCACATCCCAACGGTTAAATCAGAAAAAAATCACCATCATCAATGGAAAAAACGAGTCC ACATCACCGTAAACCGTACGCGTCGTATTGTAATTAAACTAAACCCCCAACCTCCTTCATTCTTCAGACACACACAGTTC TCTTCTTCCGGTAGCTACCATTCACCCTCTCTCTCCTCTTTCTCTCTCTTCTTTCTCTCTCATCGCCGTTCCCTCAGATC TCACCTCCGGCACCGACCATAACCGTTTCAACTTCCTACAGCAGCTACCTAATCGGAGCCTCCACCACCGTTTTCCGCCG CGGATCTAGCACCTGAGGTAAGATTCAACGACCTATCTAGCAATCTGTTGACTAATTGAAGAAGAATTTCAACCGTTTTT CTATGCTTTTTCTACTTTTGGAAGATTTCTTAATTCAAACTTCAAACGTAACGCTTTCATTTGATTTGATTCATAATCAT AGGCATAGAAGAAGAGTGTTAGTGTTGATTAATTGATTGATTGATTGATTGATTGAAGATTCGATGGCTTCGAGCACGAT TCGGAAGGCGATTGGTGCGGTGAAGGACCAGACCAGCATAGGGATAGCCAAGGTGGCGAGCAACATGGCGCCGGAGCTTG AGGTGGCGATTGTGAAGGCGACGAGCCACGATGAGGATCCGGCGAGTGAGAAGTACGCGCGGGAGGTTTTGAATTTGATG TCATACTCGCGCGGCTATGTTCACGCGTGTGTGTCGGCGGTGTCTAAGAGATTGGGGAAGACGAGGGACTGGATCGTGGC TTTGAAGGCGCTGATGTTGACTCACCGGTTGATGAATGAGGGTCCTCCGTTGTTCCAGGAGGAGATCGTGTATGCTACAC GGAGGGGGACTAGGCTGCTTAATATGTCTGATTTCAGGGATGAGGCTCACTCCAGCTCTTGGGATCACTCTGCTTTTGTC AGGACCTATGCTTTGTATCTGGATCAGCGCCTCGAGATGATGCTTTTCGACAGGAAGAGTAGCCTTGGTGGAGCTGGTGC TGGTAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGAAGTTCTGCTGATGATAGGTTTGGTGGGAGAGACAATTTCA GGTCGCCGCCTTATGAGTATGAATCAGGAGGGTTTAGAGGGGAAAGCGGGTACGGGAATAATGGGATGAGGAGGACGAGA TCGTTTGGGGATATGACTGAAACGGCGGGGCGCGAGGACAACAACAAGAAGGTTGTGACTCCCCTCAGGGATATGAAGCC AGAGAGGATTTTTGCTAAGATGGGTCATTTGCAGAGGCTGTTGGACCGTTTCTTGGCTTGCAGGCCTACTGGGTTGGCTA AGAATAGCAGGATGATTTTGATTGCCCTGTATCCGGTTGTTAAAGAGAGCTTTCAGTTGTATGCTGATATATGTGATGCT TTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTACACGGATTGCGTGAAGGCCTTTGATGCTTATGCAAGTGCGGC TAAGCAGATTGATGAGCTGGTTGCATTCTATAATTGGTGCAAGGATACGGGTGTGGGGAGGTCCTCGGAGTACCCTGAAG TTCAGAGGATTACTGCTAAGTTGCTGGAGACATTGGAGGAGTTTGTGAGGGATAGGGCCAAGAGGCCGAAAAGTCCTGAG AGGAAAGAGGAACCAGTACTGCAGATTGAACAGCCAGAAGAGGAGCCTGTACCGGATATGAACGAAATCAAGGCACTGCC TCCACCTGAGAATTATACCCCGCCACCTCAACCTGAGCCAGAGCCTAAACCACAACCACAAGTTCAGGAGGACTTGGTGA ATCTGAGGGAGGATGCAGTCACTGCAGATGACCAGGGCAATAGATTTGCTTTGGCACTCTTTGCTGGTGCACCAGCTAAT GGAAATGGATCATGGCAAGCCTTTCCCTCAAACGGACAGCCGGAAGTGACTTCAGCTTGGCAAAACCCAGCGGCAGAACC TGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGGCAAACCAGAAGGCAGCTTTAGGTGGTGGCC TTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTCAGCACTGCCAATCTGAGTGGAGGA AGTGCAAGTAGCGTGGCATTGCCAGGACCGGGGAAGACCACAACACCTGTTTTAGCTCTTCCAGCCCCAGATGGATCGGT GCAGCCAGTTAATCAGGATCCATTTGCAGCATCATTGACCATTCCACCCCCTTCCTATGTGCAAATGGCTGATATGGAGA AGAAGCAGCACTTGCTCGTGCAGGAGCAACAGGTTTGGAATCAGTATGCGAGGGATGGGATGCAAGGCCAATCTAGCTTG GCCAAATTGAACGGTGCCGGATACTATCCTGGAGGTCCTATGCCAATGATGCCTTATGGGATGCCCCCAGTCAATGGAAT GGGACCTCCAACCGGGTATTACCAAGCTCCTTACTGATTTTGCCACATACATATAGGTTGTTTCGTTTATTTTCATTTTT TACTATGACATAGTGTTTTTCCTTTGTTTGAAATGGTGTCATCTTATTATTCTTGAGACCTGCACATCAGTAGGATGGGG ATGCTAAGGAGACTGAGTTTAACGAAACAACTTCTTGTTGGGTTTTGGTGCTGGGAGAGATGTGTAACTCAGTTGTATTG TCTCTGTCTGTGTCTTTTGTAATAGTAGCATTTTCTTCTCCATTTTGTATTCAAGTGATTCTTGTTCCTTGCAACAAACG CTTAACTACTGTAAATTTCATCAAATGCTGGTACTGAGTACTGACAATCTTGATTGGTTACGCCGATTGATAATTCATCT TGTGGGAATAGCTGTGGCTGCTTATTAAGCAAATGATAGTGAAAGTTTAATTGTCATTTGTACTGTATCTTAATCTTAAT TTTTTGATTGGTTGTGTAGAACTAAACTCATGTAAGAAATACTGTTAGATATTTCAGTAAGTTGCTGGGTTGAACATTCA GGAGTGAACTTTCAGTTTGGTCATTTTTCGTTTTCTTCTTAGCTTTGGTGACCTAATTTAACTGTTTCATTACTCTTTTC ATGGATCATAATTAGATGGCGAGTAACATCTATCGTGGCATTGAAGTTTTTTTTTTTGGGTCTATTCATCATTGGCATAT ATGGTTGTCCCATACTCTTCAATTGAATTATAGAACTATTTTTGTAAGATCAATTTGGTTGAAATTGTCAATGAGGGGTG ATCTGTCATCCTAGTCTATAGGTATTACATGTTTTTTGGGATACTGTTTCATAGTTATTTTCCGAGCTTTTGGGGTTGTT CATCTGTAATCTACGGAGATATATTATGGAATTGAAGGCTTTAGAAAGTGTGTTGAAAATGGTTGAAAGCTACAAGGTTC TAGTTCTATTAATAATTTGGATTCAAGTTCAAATCTTCCAAATCACTTTTTCCCACAATTAATTCTCGCTTATTCAAACA TGCAGTAAAGAAGTTATGAATTTGTCCATTTATTTTGTTTCTTGTTGGCAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0382900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGAGCACGATTCGGAAGGCGATTGGTGCGGTGAAGGACCAGACCAGCATAGGGATAGCCAAGGTGGCGAGCAA CATGGCGCCGGAGCTTGAGGTGGCGATTGTGAAGGCGACGAGCCACGATGAGGATCCGGCGAGTGAGAAGTACGCGCGGG AGGTTTTGAATTTGATGTCATACTCGCGCGGCTATGTTCACGCGTGTGTGTCGGCGGTGTCTAAGAGATTGGGGAAGACG AGGGACTGGATCGTGGCTTTGAAGGCGCTGATGTTGACTCACCGGTTGATGAATGAGGGTCCTCCGTTGTTCCAGGAGGA GATCGTGTATGCTACACGGAGGGGGACTAGGCTGCTTAATATGTCTGATTTCAGGGATGAGGCTCACTCCAGCTCTTGGG ATCACTCTGCTTTTGTCAGGACCTATGCTTTGTATCTGGATCAGCGCCTCGAGATGATGCTTTTCGACAGGAAGAGTAGC CTTGGTGGAGCTGGTGCTGGTAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGAAGTTCTGCTGATGATAGGTTTGG TGGGAGAGACAATTTCAGGTCGCCGCCTTATGAGTATGAATCAGGAGGGTTTAGAGGGGAAAGCGGGTACGGGAATAATG GGATGAGGAGGACGAGATCGTTTGGGGATATGACTGAAACGGCGGGGCGCGAGGACAACAACAAGAAGGTTGTGACTCCC CTCAGGGATATGAAGCCAGAGAGGATTTTTGCTAAGATGGGTCATTTGCAGAGGCTGTTGGACCGTTTCTTGGCTTGCAG GCCTACTGGGTTGGCTAAGAATAGCAGGATGATTTTGATTGCCCTGTATCCGGTTGTTAAAGAGAGCTTTCAGTTGTATG CTGATATATGTGATGCTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTACACGGATTGCGTGAAGGCCTTTGAT GCTTATGCAAGTGCGGCTAAGCAGATTGATGAGCTGGTTGCATTCTATAATTGGTGCAAGGATACGGGTGTGGGGAGGTC CTCGGAGTACCCTGAAGTTCAGAGGATTACTGCTAAGTTGCTGGAGACATTGGAGGAGTTTGTGAGGGATAGGGCCAAGA GGCCGAAAAGTCCTGAGAGGAAAGAGGAACCAGTACTGCAGATTGAACAGCCAGAAGAGGAGCCTGTACCGGATATGAAC GAAATCAAGGCACTGCCTCCACCTGAGAATTATACCCCGCCACCTCAACCTGAGCCAGAGCCTAAACCACAACCACAAGT TCAGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGATGACCAGGGCAATAGATTTGCTTTGGCACTCTTTG CTGGTGCACCAGCTAATGGAAATGGATCATGGCAAGCCTTTCCCTCAAACGGACAGCCGGAAGTGACTTCAGCTTGGCAA AACCCAGCGGCAGAACCTGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGGCAAACCAGAAGGC AGCTTTAGGTGGTGGCCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTCAGCACTG CCAATCTGAGTGGAGGAAGTGCAAGTAGCGTGGCATTGCCAGGACCGGGGAAGACCACAACACCTGTTTTAGCTCTTCCA GCCCCAGATGGATCGGTGCAGCCAGTTAATCAGGATCCATTTGCAGCATCATTGACCATTCCACCCCCTTCCTATGTGCA AATGGCTGATATGGAGAAGAAGCAGCACTTGCTCGTGCAGGAGCAACAGGTTTGGAATCAGTATGCGAGGGATGGGATGC AAGGCCAATCTAGCTTGGCCAAATTGAACGGTGCCGGATACTATCCTGGAGGTCCTATGCCAATGATGCCTTATGGGATG CCCCCAGTCAATGGAATGGGACCTCCAACCGGGTATTACCAAGCTCCTTACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0382900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYAREVLNLMSYSRGYVHACVSAVSKRLGKT RDWIVALKALMLTHRLMNEGPPLFQEEIVYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLEMMLFDRKSS LGGAGAGSGGSGGGGGGGGSSADDRFGGRDNFRSPPYEYESGGFRGESGYGNNGMRRTRSFGDMTETAGREDNNKKVVTP LRDMKPERIFAKMGHLQRLLDRFLACRPTGLAKNSRMILIALYPVVKESFQLYADICDALAVLLDKFFDMEYTDCVKAFD AYASAAKQIDELVAFYNWCKDTGVGRSSEYPEVQRITAKLLETLEEFVRDRAKRPKSPERKEEPVLQIEQPEEEPVPDMN EIKALPPPENYTPPPQPEPEPKPQPQVQEDLVNLREDAVTADDQGNRFALALFAGAPANGNGSWQAFPSNGQPEVTSAWQ NPAAEPGKADWELALVETASNLANQKAALGGGLDPLLLNGMYDQGMVRQHVSTANLSGGSASSVALPGPGKTTTPVLALP APDGSVQPVNQDPFAASLTIPPPSYVQMADMEKKQHLLVQEQQVWNQYARDGMQGQSSLAKLNGAGYYPGGPMPMMPYGM PPVNGMGPPTGYYQAPY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22951
1 647 647 0.0 –
PANTHER
PTHR22951:SF13
1 647 647 0.0 –
Gene3D
G3DSA:1.25.40.90
3 156 154 7.7E-44
IPR008942
ProSiteProfiles
PS50942
24 160 137 32.234
IPR013809
SMART
SM00273
30 160 131 1.8E-42
IPR013809
SUPERFAMILY
SSF48464
30 151 122 5.38E-31
IPR008942
Pfam
PF07651
31 153 123 1.0E-39
IPR011417
CDD
cd16987
32 151 120 1.66412E-66 –
MobiDBLite
mobidb-lite
164 220 57 - –
Pfam
PF07651
226 370 145 1.4E-40
IPR011417
Gene3D
G3DSA:1.20.58.150
234 380 147 3.6E-40
IPR014712
SUPERFAMILY
SSF89009
240 370 131 2.9E-41 –
MobiDBLite
mobidb-lite
369 427 59 - –
MobiDBLite
mobidb-lite
369 388 20 - –
MobiDBLite
mobidb-lite
407 424 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0382900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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