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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0382900 |
| Transcript ID | LotjaGi1g1v0382900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86633644..86635617) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCGAGCACGATTCGGAAGGCGATTGGTGCGGTGAAGGACCAGACCAGCATAGGGATAGCCAAGGTGGCGAGCAA CATGGCGCCGGAGCTTGAGGTGGCGATTGTGAAGGCGACGAGCCACGATGAGGATCCGGCGAGTGAGAAGTACGCGCGGG AGGTTTTGAATTTGATGTCATACTCGCGCGGCTATGTTCACGCGTGTGTGTCGGCGGTGTCTAAGAGATTGGGGAAGACG AGGGACTGGATCGTGGCTTTGAAGGCGCTGATGTTGACTCACCGGTTGATGAATGAGGGTCCTCCGTTGTTCCAGGAGGA GATCGTGTATGCTACACGGAGGGGGACTAGGCTGCTTAATATGTCTGATTTCAGGGATGAGGCTCACTCCAGCTCTTGGG ATCACTCTGCTTTTGTCAGGACCTATGCTTTGTATCTGGATCAGCGCCTCGAGATGATGCTTTTCGACAGGAAGAGTAGC CTTGGTGGAGCTGGTGCTGGTAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGAAGTTCTGCTGATGATAGGTTTGG TGGGAGAGACAATTTCAGGTCGCCGCCTTATGAGTATGAATCAGGAGGGTTTAGAGGGGAAAGCGGGTACGGGAATAATG GGATGAGGAGGACGAGATCGTTTGGGGATATGACTGAAACGGCGGGGCGCGAGGACAACAACAAGAAGGTTGTGACTCCC CTCAGGGATATGAAGCCAGAGAGGATTTTTGCTAAGATGGGTCATTTGCAGAGGCTGTTGGACCGTTTCTTGGCTTGCAG GCCTACTGGGTTGGCTAAGAATAGCAGGATGATTTTGATTGCCCTGTATCCGGTTGTTAAAGAGAGCTTTCAGTTGTATG CTGATATATGTGATGCTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTACACGGATTGCGTGAAGGCCTTTGAT GCTTATGCAAGTGCGGCTAAGCAGATTGATGAGCTGGTTGCATTCTATAATTGGTGCAAGGATACGGGTGTGGGGAGGTC CTCGGAGTACCCTGAAGTTCAGAGGATTACTGCTAAGTTGCTGGAGACATTGGAGGAGTTTGTGAGGGATAGGGCCAAGA GGCCGAAAAGTCCTGAGAGGAAAGAGGAACCAGTACTGCAGATTGAACAGCCAGAAGAGGAGCCTGTACCGGATATGAAC GAAATCAAGGCACTGCCTCCACCTGAGAATTATACCCCGCCACCTCAACCTGAGCCAGAGCCTAAACCACAACCACAAGT TCAGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGATGACCAGGGCAATAGATTTGCTTTGGCACTCTTTG CTGGTGCACCAGCTAATGGAAATGGATCATGGCAAGCCTTTCCCTCAAACGGACAGCCGGAAGTGACTTCAGCTTGGCAA AACCCAGCGGCAGAACCTGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGGCAAACCAGAAGGC AGCTTTAGGTGGTGGCCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTCAGCACTG CCAATCTGAGTGGAGGAAGTGCAAGTAGCGTGGCATTGCCAGGACCGGGGAAGACCACAACACCTGTTTTAGCTCTTCCA GCCCCAGATGGATCGGTGCAGCCAGTTAATCAGGATCCATTTGCAGCATCATTGACCATTCCACCCCCTTCCTATGTGCA AATGGCTGATATGGAGAAGAAGCAGCACTTGCTCGTGCAGGAGCAACAGGTTTGGAATCAGTATGCGAGGGATGGGATGC AAGGCCAATCTAGCTTGGCCAAATTGAACGGTGCCGGATACTATCCTGGAGGTCCTATGCCAATGATGCCTTATGGGATG CCCCCAGTCAATGGAATGGGACCTCCAACCGGGTATTACCAAGCTCCTTACTGA
CDS sequence (LotjaGi1g1v0382900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGAGCACGATTCGGAAGGCGATTGGTGCGGTGAAGGACCAGACCAGCATAGGGATAGCCAAGGTGGCGAGCAA CATGGCGCCGGAGCTTGAGGTGGCGATTGTGAAGGCGACGAGCCACGATGAGGATCCGGCGAGTGAGAAGTACGCGCGGG AGGTTTTGAATTTGATGTCATACTCGCGCGGCTATGTTCACGCGTGTGTGTCGGCGGTGTCTAAGAGATTGGGGAAGACG AGGGACTGGATCGTGGCTTTGAAGGCGCTGATGTTGACTCACCGGTTGATGAATGAGGGTCCTCCGTTGTTCCAGGAGGA GATCGTGTATGCTACACGGAGGGGGACTAGGCTGCTTAATATGTCTGATTTCAGGGATGAGGCTCACTCCAGCTCTTGGG ATCACTCTGCTTTTGTCAGGACCTATGCTTTGTATCTGGATCAGCGCCTCGAGATGATGCTTTTCGACAGGAAGAGTGGT GGTGGAAGTTCTGCTGATGATAGGTTTGGTGGGAGAGACAATTTCAGGTCGCCGCCTTATGAGTATGAATCAGGAGGGTT TAGAGGGGAAAGCGGGTACGGGAATAATGGGATGAGGAGGACGAGATCGTTTGGGGATATGACTGAAACGGCGGGGCGCG AGGACAACAACAAGAAGGTTGTGACTCCCCTCAGGGATATGAAGCCAGAGAGGATTTTTGCTAAGATGGGTCATTTGCAG AGGCTGTTGGACCGTTTCTTGGCTTGCAGGCCTACTGGGTTGGCTAAGAATAGCAGGATGATTTTGATTGCCCTGTATCC GGTTGTTAAAGAGAGCTTTCAGTTGTATGCTGATATATGTGATGCTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGG AGTACACGGATTGCGTGAAGGCCTTTGATGCTTATGCAAGTGCGGCTAAGCAGATTGATGAGCTGGTTGCATTCTATAAT TGGTGCAAGGATACGGGTGTGGGGAGGTCCTCGGAGTACCCTGAAGTTCAGAGGATTACTGCTAAGTTGCTGGAGACATT GGAGGAGTTTGTGAGGGATAGGGCCAAGAGGCCGAAAAGTCCTGAGAGGAAAGAGGAACCAGTACTGCAGATTGAACAGC CAGAAGAGGAGCCTGTACCGGATATGAACGAAATCAAGGCACTGCCTCCACCTGAGAATTATACCCCGCCACCTCAACCT GAGCCAGAGCCTAAACCACAACCACAAGTTCAGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGATGACCA GGGCAATAGATTTGCTTTGGCACTCTTTGCTGGTGCACCAGCTAATGGAAATGGATCATGGCAAGCCTTTCCCTCAAACG GACAGCCGGAAGTGACTTCAGCTTGGCAAAACCCAGCGGCAGAACCTGGGAAAGCCGATTGGGAATTGGCATTGGTAGAG ACTGCTAGCAATTTGGCAAACCAGAAGGCAGCTTTAGGTGGTGGCCTTGATCCCTTATTGTTGAATGGCATGTATGATCA AGGAATGGTGAGGCAGCATGTCAGCACTGCCAATCTGAGTGGAGGAAGTGCAAGTAGCGTGGCATTGCCAGGACCGGGGA AGACCACAACACCTGTTTTAGCTCTTCCAGCCCCAGATGGATCGGTGCAGCCAGTTAATCAGGATCCATTTGCAGCATCA TTGACCATTCCACCCCCTTCCTATGTGCAAATGGCTGATATGGAGAAGAAGCAGCACTTGCTCGTGCAGGAGCAACAGGT TTGGAATCAGTATGCGAGGGATGGGATGCAAGGCCAATCTAGCTTGGCCAAATTGAACGGTGCCGGATACTATCCTGGAG GTCCTATGCCAATGATGCCTTATGGGATGCCCCCAGTCAATGGAATGGGACCTCCAACCGGGTATTACCAAGCTCCTTAC TGA
Protein sequence (LotjaGi1g1v0382900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYAREVLNLMSYSRGYVHACVSAVSKRLGKT RDWIVALKALMLTHRLMNEGPPLFQEEIVYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLEMMLFDRKSG GGSSADDRFGGRDNFRSPPYEYESGGFRGESGYGNNGMRRTRSFGDMTETAGREDNNKKVVTPLRDMKPERIFAKMGHLQ RLLDRFLACRPTGLAKNSRMILIALYPVVKESFQLYADICDALAVLLDKFFDMEYTDCVKAFDAYASAAKQIDELVAFYN WCKDTGVGRSSEYPEVQRITAKLLETLEEFVRDRAKRPKSPERKEEPVLQIEQPEEEPVPDMNEIKALPPPENYTPPPQP EPEPKPQPQVQEDLVNLREDAVTADDQGNRFALALFAGAPANGNGSWQAFPSNGQPEVTSAWQNPAAEPGKADWELALVE TASNLANQKAALGGGLDPLLLNGMYDQGMVRQHVSTANLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAAS LTIPPPSYVQMADMEKKQHLLVQEQQVWNQYARDGMQGQSSLAKLNGAGYYPGGPMPMMPYGMPPVNGMGPPTGYYQAPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 630 | 630 | 0.0 | – | |
| PANTHER | 1 | 630 | 630 | 0.0 | – | |
| Gene3D | 3 | 156 | 154 | 7.3E-44 | ||
| ProSiteProfiles | 24 | 160 | 137 | 31.987 | ||
| SMART | 30 | 160 | 131 | 3.6E-42 | ||
| SUPERFAMILY | 30 | 151 | 122 | 5.09E-31 | ||
| Pfam | 31 | 353 | 323 | 1.0E-82 | ||
| CDD | 32 | 151 | 120 | 1.22019E-66 | – | |
| Gene3D | 217 | 363 | 147 | 3.4E-40 | ||
| SUPERFAMILY | 223 | 353 | 131 | 2.79E-41 | – | |
| MobiDBLite | 352 | 371 | 20 | - | – | |
| MobiDBLite | 352 | 410 | 59 | - | – | |
| MobiDBLite | 390 | 407 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
| Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
| Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
| Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi1g1v0382900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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