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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0389700 |
| Transcript ID | LotjaGi1g1v0389700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ; TAIR: AT5G25530.2 DNAJ heat shock family protein; Swiss-Prot: sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4; TrEMBL-Plants: tr|I1K906|I1K906_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87307732..87310395) extracted from Lotus japonicus Gifu genome v1.2.
TATTAATCCCTTTCATGAAAATTAATATGTTAAAGTTTGTAATGTAGGAACCTGAAGAACCTTTAAAATGCTGCAATCCA TTTTCCTCTTGTAACCAAAAGTTACAAAAACGCTGCAATCCAATTCATCAACTTCCATATTTCTGAATTTTTTGACAATT GATTTTAGCATTATCGTTTGTTCCATTAGCACTTCATCCTAAATGTACCCTCTGAGAAAGTTATTGACTTTGCAGGAAGA ATAGTTGATTTCAAAATCTGGGTGTCCATGAAAAGAGCCTAAATTTTGAAATTTTGGCATTTTAGGATCCAACATTAATT GTAACATTTGCAAGATTTAGATCATTTTTCAATAAAAACATAAGAAAACATGGGTGTGGATTACTACCATACATTGAATG TGGAAAGAAATGCAACAGAGGATGATCTAAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCACCCTGACAAGAACCCC ACCAACAAAAAAGAAGCTGAAGCCAATTTCAAGCAGATTTCTGAGGCCTATGATGTAAGAAATCAATCCTTTGTTTCTTT CTCTTTTCAATTTTGCATTGCATTTTCTTTATACAGGAATATGTGTTTATCAATGATAATTATTCTCTTGTTCTGTGTCA TGCATGCTAGATTTGATGCAATTTTCTTCTAATCATAGGTGTCTACAATTTTAATAGCATATTATTAACTGGGCAAATTT AAGATTTAAAGGGTTTGGCTTTGGAGAAATTTTGAGAAAAATTTGTCAATTCAGGTATTGAGTGATCCTCAGAAGAGGGC AATTTATGATCAGCATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGGGCATGAAAATACAAATGGATTTAATCCCA GAAATGCAGAAGACATTTTTGCAGAATTCTTTGGAAGTAGTCCTTTTGGATTTGGATCATCAGGACCAGGGAGGTCCAAG AGATTCCCTTCTGATGGAGGGGGGGCATTTAGTGGATTCAATGGAAGTGACAACATTTTTAGAACATATAGTGAAAGGGG GAACATGCCAAAGAAGCCACCACCCGTAGAGACCAAATTGCCTTGCAGGTTGGAGGAGTTGTATTCTGGATCCACAAGGA AAATGAAGATCTCAAGGACTGTAATGGATGCCAAAGGGTAGGTATAATTTAATCATCTTGACCTATGTAGCATTTTGGAT TTATTTCTCCATATTCAATTTTGAAACTTTGAAGCCATTGTTTGTGCATGTTTAGATACACAACAAAAAATCATGGTGAG CCAAAATCACAGTGGGTAGAATTCTCTTAACTTTTAGGGTTGTCCACTGTGATTTTTGTTTCACCGTATTTTTCAATATG TCTATAATTATGTATTCAGAATTGAAACCCATAAGCTGCTGCCAGTGTGACATGCTTCTATTATTTCATTAGAATCAATT CTGAAACCCTAAAGTTACAGATGAAAGTTTCTCTTGAGAATCGATTCTGCATTCAAACTTATAACATGCTTTGATTAACT TATATTTATTCAGAACCAATTCTGGGAGTTTCTTGCCATAATTGATCTGGCTTCTGAATCAATTGTAGAAGGCCAAACAT GCACTTAATTATAGAAGGGTTCCCAAACAAATAAAAGTTTCTCACAACTATTGATTATGTCTTCAGAAGAATTTCCAAAT ATGCACTTGTTTCTTGACTTGCTTTGAGGACACAAGCATGGCCTTGTGCAATGGTAATATCACTAATTGCTTCATTGTCA ATTCTTCTAATGTGACTTTGCAAAAATTGCAGAAGATCGATTCCAGAAACAGAGATATTAACCATTGAAGTGAAGCCAGG TTGGAAGAAAGGGACCAAGATTACATTCCCAGACAAAGGGAATCAGCAAGCAAATCAACTGCCAGCAGACCTTGTGTTTG TGATTGATGAGAAGCCTCATGAGTTCTTCAAGAGAGATGGGAATGACCTCATTGTGAGCCAAAGGGTGTCACTAGCAGAA GCCATTGGAGGAACTGTACTAAATCTCACAACACTTGATAAACGAAGCTTGCGTGTGCCTGTGAATGAAATTGTTAGCCC TGGTTATGAGCTGGTTGTTGCAAATGAAGGAATGCCAATAACAAAGGAGCGTGGTTATAAGGGTGATTTGAGGATCATAT TTGAGGTTAAGTTCCCTACAAGATTGACGCCAGAACAAAGAGCTGGACTAAAGAGAGCATTGGGAGGCTGAGGGTCATGT CTTCTTCATATCCATAGCTTTCACTTCTTTTTTGCCGTAACAAAGGTATCCTCCATCAGAGGCAATCAAGTTCGAATCGG GAACAATATTATTAGTAGCTTTAACTCCTTTGAACAATGGTTGAAGCCAAAGTGGATCCTATACTAATACCGTCAATTTC CAGTCCCTTTTCAGTGTCTCTTGTATTGGCCTTGCCTTGGAAATTACTATGTATTTTCTATCTTTTTCTTTTCTTTTATC TTTCTCAGTGGTTTATAATTCTTCCATACATATTTGTGGGGTGTAAGATGAGACCTTCTCATTGTTGTATACTTGTATAT TTTGCTCAAACTTAAATAGTGAAATATAATATAGGCTGTAAATTGCACATAGCAGTCAGAAGAAAATGTTTCCTACATCT TATCTAAAGTTTTTACGGTTCTAA
CDS sequence (LotjaGi1g1v0389700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGATTACTACCATACATTGAATGTGGAAAGAAATGCAACAGAGGATGATCTAAAGAAAGCATATAGAAAGTT GGCCATGAAATGGCACCCTGACAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAGCAGATTTCTGAGGCCT ATGATGTATTGAGTGATCCTCAGAAGAGGGCAATTTATGATCAGCATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCT GGGCATGAAAATACAAATGGATTTAATCCCAGAAATGCAGAAGACATTTTTGCAGAATTCTTTGGAAGTAGTCCTTTTGG ATTTGGATCATCAGGACCAGGGAGGTCCAAGAGATTCCCTTCTGATGGAGGGGGGGCATTTAGTGGATTCAATGGAAGTG ACAACATTTTTAGAACATATAGTGAAAGGGGGAACATGCCAAAGAAGCCACCACCCGTAGAGACCAAATTGCCTTGCAGG TTGGAGGAGTTGTATTCTGGATCCACAAGGAAAATGAAGATCTCAAGGACTGTAATGGATGCCAAAGGAAGATCGATTCC AGAAACAGAGATATTAACCATTGAAGTGAAGCCAGGTTGGAAGAAAGGGACCAAGATTACATTCCCAGACAAAGGGAATC AGCAAGCAAATCAACTGCCAGCAGACCTTGTGTTTGTGATTGATGAGAAGCCTCATGAGTTCTTCAAGAGAGATGGGAAT GACCTCATTGTGAGCCAAAGGGTGTCACTAGCAGAAGCCATTGGAGGAACTGTACTAAATCTCACAACACTTGATAAACG AAGCTTGCGTGTGCCTGTGAATGAAATTGTTAGCCCTGGTTATGAGCTGGTTGTTGCAAATGAAGGAATGCCAATAACAA AGGAGCGTGGTTATAAGGGTGATTTGAGGATCATATTTGAGGTTAAGTTCCCTACAAGATTGACGCCAGAACAAAGAGCT GGACTAAAGAGAGCATTGGGAGGCTGA
Protein sequence (LotjaGi1g1v0389700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVDYYHTLNVERNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYDVLSDPQKRAIYDQHGEEGLKDRPPP GHENTNGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSKRFPSDGGGAFSGFNGSDNIFRTYSERGNMPKKPPPVETKLPCR LEELYSGSTRKMKISRTVMDAKGRSIPETEILTIEVKPGWKKGTKITFPDKGNQQANQLPADLVFVIDEKPHEFFKRDGN DLIVSQRVSLAEAIGGTVLNLTTLDKRSLRVPVNEIVSPGYELVVANEGMPITKERGYKGDLRIIFEVKFPTRLTPEQRA GLKRALGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 326 | 326 | 7.5E-137 | – | |
| PANTHER | 1 | 326 | 326 | 7.5E-137 | – | |
| Gene3D | 2 | 118 | 117 | 5.3E-39 | ||
| SUPERFAMILY | 3 | 110 | 108 | 1.2E-32 | ||
| SMART | 3 | 62 | 60 | 3.6E-31 | ||
| ProSiteProfiles | 4 | 70 | 67 | 23.857 | ||
| CDD | 4 | 59 | 56 | 1.22076E-24 | ||
| Pfam | 4 | 67 | 64 | 3.1E-27 | ||
| PRINTS | 6 | 24 | 19 | 5.6E-28 | ||
| PRINTS | 24 | 39 | 16 | 5.6E-28 | ||
| PRINTS | 42 | 62 | 21 | 5.6E-28 | ||
| ProSitePatterns | 47 | 66 | 20 | - | ||
| PRINTS | 62 | 81 | 20 | 5.6E-28 | ||
| MobiDBLite | 70 | 89 | 20 | - | – | |
| Gene3D | 151 | 230 | 80 | 4.0E-30 | – | |
| CDD | 151 | 314 | 164 | 3.15641E-47 | – | |
| SUPERFAMILY | 152 | 233 | 82 | 6.54E-16 | ||
| Pfam | 153 | 311 | 159 | 1.1E-40 | ||
| Gene3D | 231 | 327 | 97 | 1.2E-25 | – | |
| SUPERFAMILY | 234 | 320 | 87 | 2.49E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi1g1v0389700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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