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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390200 |
| Transcript ID | LotjaGi1g1v0390200.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|A0A0B2Q4J0|A0A0B2Q4J0_GLYSO Syntaxin-32; Found in the gene: LotjaGi1g1v0390200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87353506..87357412) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCACGAATTCCACAGCATCACAGAGAGGTTGAAGAAATC AGGATCTGGACCCAATGGACCTGCCACCACCACCACCACCTCATCCAGATCGGAGGAACCCCGTTCTGCCATTGCTATGC AATCAGAATTCAACAAAAGAGCCTCCAAAATCGGTTACGGCATTCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCAAAA TGTAACCAATTCCATTGATTCACTCACTATTTCTCAACACTGACTATTCAATGCTAGTTTATGTGATTGTTTTAGAACTA TGCAAATGCAATCAATAGCTTTAGCTTTCTATTTGTTATGGTTTGCAGTGGCGAAAAGGACTTCGGTTTTCGATGACCCT ACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAGGATATTACTGCGCTAAACTCCGCGGTTGTTGATCTTCAGTT ACTCAGCAATTCTAGGAATGAGAGTGGAAATGCTTCTGCCGACACGACTAGTCATTCCACCACGGTTGTAGATGACCTCA AGACGCGGTTGATGGGTGCCACGAAGGAGTTTAAAGATGTTCTCACCATGAGAACTGAGGTAATGATAATGTACTGTATT GGTGTGTTTTTTGTGTGGATGTTTTGCACCTTCATGTCTGAGGCTGATGATGATGTTGTGTTGTTGTGTTTTGTGAAGAA CATGAAAGTACACGAGAGTAGGAGACAATTGTTTTCGGCCTCTGCCTCGAAAGATTCTGCTAACCCTTTTGTCCGTCAGC GACCTTTAGCTACGAGGTCCGCTGCTAGTTCTTCTGATGCCCCTGCACCTCCATGGGCTAGTGGTTCGCAATCTTCATCC CAGTTGTTTCCTAAGTAAGTTGTGTTGTTCTATCTTTGTTCTTTTGTTGATTCGTTGTAGGCTCTAGTTAAGCACCGCTT TGTTGTTTTCCTGCTGATTTTTTATGCAATGCAGGTAAACTAATTTATTAGATAATCTGCATTACTGCTTCTTCATCGCT TAATTTGTAGTAGTATGCCATTAGACTATTGAGGTGCATAATTTTTATTCAAAGGAACTGGCGATTCTAGTGAAGATTGA TCTATTCATATTGAGCAAAAGCGTAGCTACATACCCTTGTTTTATTTGACTTCCTCAAATTGTCATTTGAAGTATAATAG AACTCAAATTTGCTGCTTTTTGGCACAAGTGCACCACCATTGGGTCCATATTTATTAATTTCAGTTTGGAAAGTATGTCT TTACTCCCTCCTTTGTGATTGCATTTGTTAGATAGAGTATATAGATAAAAATAGATAATATGCATCGAGTTGTAATGAGT GATCAGTACTGAGCAGTCTGAGCTATGGAACTGTTAAGTTAGAGTTACTTAGGTATTGGTTAGAATTCTGTTAGAGAAGT TACTTTATAACTGCAGTTTGCAACAAGCCTGGTTAGGCTTTATGTCCACTCATATATTGTAGAATCATTCAGATATGAAA TTATCACTTCAGAAACAGTTTTTCTCTATCTTTTCACTTCTATGAACTCTAACAGCATTGAACAGACATAAGTTCGTAAC CTTTGCTTTACTGTATTAATTAATTAAATCACTTAAATTAATTTATGGATTTCATTTGCTTGTTTGCTTACAACTAGGCC TGTCAAACAGGGTGTCTCGTCAAACCTTGTTTTGTTGCCCTAGCCTGGACTGAGAAAACTGTAGGACTAGTAAACTTGGC CCGGCCTAGGGAAATTGGCTGGTCAAACAGGATAGCCCAAAATGCATGTAGAAAAGCAGGAAGGCTCATTCAAAATGTCA GACCATTTTCCTTTATTGGGATGACTTGGCCTGACAAAGAGGATTGGAATTGAAATGGCAGGTCTTCCTAAAAAAATTGT GCATCTGGGACCAAATTAAGAGCTCTAGTTACAAGCATGACTTGTGGATCCTTTCCTATTTAATAATGAAAACTTTTGCT ATGCTTAATATTTTAAGGTTGTTTCAGGTTGGATTAAATTCTTTCTGGAACTATGGCTCCAGACATTTTTTTTTTTGATT TAAAACTTTCATGGCTTTAAATCTACAGGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAACAACAA CAGCAACAGCAGCAACAGATAGTTCCTTTACAAGACAGTTACATGCAAAGCAGAGCAGAAGCACTTCAGAATGTTGAGTC CACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGGTTGCCATCAGGTATT TATATGTCGAACTCATGTTGCTATACAAACCTCTAACAACCTAGTCTATAAATATTGTACTTCTGAATCACGTTAATATC GATAACTAATCAAAATACTTCCAGTTTCAAGAAGTTTGTAGTTAAGATGATTATAGATACTGATTTAAAATACAAGAGAA AGAAAGTAAGAAACTTTTATTGAATATTCTCCTCCAATGTTGCATCAACGGTTATCCAGGGTCAAGAAGAGGAAGAATGG GATAAAACGTAGTCTTTCCAAGCAATTTGAGAGCTTGGCCTCTCCCACCCAAAACCAATTGACCAACTAATACTTTCCTT ACATTCTCTGTTTCTATTTATAGAGGTCTTATTCTTTAATTACTCTAACCACATTCCTAAAGAGGCATCCTCGTAAATAT GCCCAACTATATCAAGGGCTGGCGCACTTGATTCATTGGCTCGTGTGATGTAAGCTTTCCTAATGGGGATCTGTTCCTAA AGATGATTTGGTTGTTTACTGTGTATTTACTATAGGGTTGTGATGCCATTCTGTTTGAATTGCTTGTTTTGGTGCTTACT AGAGAAATGTCTTGCATAAGAATTTAGCTAGGTGGACTGGGTTTCTTGTCTGTTGGAGATGATTGGGTTGTTAACTGCAT GTTGACTTTAGGGTTGTGAGTGCCATGCCCTTAAAATTGGTTATTTTGGTGCTTATTGAGTGGAGACTAGAGAGATGACT TTTATAAGAATTTAGCCTCCTTTAAAATACAAGGAAAAGTTTAAAGCTTTAAAGTATTGGTGGATAACTTTTGATGAAAA TAAAAACAGATGATGTCATAGTAACTTCATGAACAAGTAATCTGGTGCTTGCACTTGAAAAAGACCTGAACCTTTGATGT CTTCTAATCAGTTGTTGTCCGCATGCACTTTGTTTTCTATAAAGTACCTTCTACACTTAGTGCCTTAGTGGAGTTAAATC GTATGCATAGAACCCGTGCTTTGCCCTCCCTTGTGTTGCTTTTATAATTCCTCAATCTTATTTGTTGCTTTCAGTATGTA CGGGGTCTTGCCATAGAAACATTTCCTCCCGGTTCCAATGTATTTGGTGACAGTTAAAACTTAGCCTGCTCTTTCATCTT TGGTCTGGGGACCGAGTTGCGCATAAAATCTTTTATGTTCACTTTAATCTCCTCTTCCCTCCTTGTTTATGCCTGTTTTT AGTTAGTTTTTTTGGGTGTCTGATTTTGTCATTTATTTGTTGAATATGTTTTGGGATGTGTGGATACACATATGCTAGGA TTACAGTATAAAACTAGTTGTAATTTGGTGTGAACAATTTCATACATATACTTTGATTGCTGCTGATAAGGTGAAATTGC TTGATCTTTTCTTTCATATTGGCCAATTGTCACAATGGCGAGGTTTACAGAGGTATTGAATTTGCAGGATTGATGAAAAC ATGGATGATACATTGGCAAACGTGGAGGGGGCGCAAGGTGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTG GCTCATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG
CDS sequence (LotjaGi1g1v0390200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCACGAATTCCACAGCATCACAGAGAGGTTGAAGAAATC AGGATCTGGACCCAATGGACCTGCCACCACCACCACCACCTCATCCAGATCGGAGGAACCCCGTTCTGCCATTGCTATGC AATCAGAATTCAACAAAAGAGCCTCCAAAATCGGTTACGGCATTCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCAAAA TTGGCGAAAAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAGGATATTAC TGCGCTAAACTCCGCGGTTGTTGATCTTCAGTTACTCAGCAATTCTAGGAATGAGAGTGGAAATGCTTCTGCCGACACGA CTAGTCATTCCACCACGGTTGTAGATGACCTCAAGACGCGGTTGATGGGTGCCACGAAGGAGTTTAAAGATGTTCTCACC ATGAGAACTGAGAACATGAAAGTACACGAGAGTAGGAGACAATTGTTTTCGGCCTCTGCCTCGAAAGATTCTGCTAACCC TTTTGTCCGTCAGCGACCTTTAGCTACGAGGTCCGCTGCTAGTTCTTCTGATGCCCCTGCACCTCCATGGGCTAGTGGTT CGCAATCTTCATCCCAGTTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAACAACAA CAGCAACAGCAGCAACAGATAGTTCCTTTACAAGACAGTTACATGCAAAGCAGAGCAGAAGCACTTCAGAATGTTGAGTC CACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGGTTGCATCCTCGATTG ATGAAAACATGGATGATACATTGGCAAACGTGGAGGGGGCGCAAGGTGCTTTGTTGAAGTATCTGAACAGCATATCTTCT AATAGGTGGCTCATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG
Protein sequence (LotjaGi1g1v0390200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVKSAQSSYRDRTHEFHSITERLKKSGSGPNGPATTTTTSSRSEEPRSAIAMQSEFNKRASKIGYGIHQTSQKLAKLAK LAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNASADTTSHSTTVVDDLKTRLMGATKEFKDVLT MRTENMKVHESRRQLFSASASKDSANPFVRQRPLATRSAASSSDAPAPPWASGSQSSSQLFPKKQVDGESQPLLQQQQQQ QQQQQQIVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVASSIDENMDDTLANVEGAQGALLKYLNSISS NRWLMIKIFFVLIFFLMVFLFFVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| Phobius | 1 | 322 | 322 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 2 | 343 | 342 | 7.6E-165 | – | |
| PANTHER | 2 | 343 | 342 | 7.6E-165 | – | |
| Pfam | 8 | 26 | 19 | 4.1E-4 | ||
| MobiDBLite | 30 | 51 | 22 | - | – | |
| SUPERFAMILY | 54 | 307 | 254 | 1.41E-44 | ||
| MobiDBLite | 169 | 240 | 72 | - | – | |
| MobiDBLite | 172 | 186 | 15 | - | – | |
| MobiDBLite | 195 | 240 | 46 | - | – | |
| Gene3D | 235 | 344 | 110 | 1.3E-16 | – | |
| SMART | 247 | 314 | 68 | 6.1E-15 | ||
| ProSiteProfiles | 252 | 314 | 63 | 17.714 | ||
| CDD | 255 | 333 | 79 | 2.89479E-40 | – | |
| Pfam | 292 | 340 | 49 | 7.4E-15 | ||
| TMHMM | 321 | 343 | 23 | - | – | |
| Phobius | 323 | 343 | 21 | - | – | |
| Phobius | 344 | 344 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0390200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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