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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0399600 |
| Transcript ID | LotjaGi1g1v0399600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptide peptidase-like protein; TAIR: AT2G03120.1 signal peptide peptidase; Swiss-Prot: sp|O81062|SIP_ARATH Signal peptide peptidase; TrEMBL-Plants: tr|I3S2E3|I3S2E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0399600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88670980..88675749) extracted from Lotus japonicus Gifu genome v1.2.
TCAATCGATGTTAATGGAATTTTGTATGTCATTGCAGGTTTAACCTTGGCACCGCTTGTTGTGAAAGTGGATCCGAATTT AAATGTTATTTTGACTGCCTGCATCACTGTGTTTGTCGGATGTTATCGTTCTGTCAAACCAACCCCACCAACTGTAAGTT GTAGCTTTGCCCATTCTCTGCTTCACATTGCGCTATTCGTTACTAGAGATCTGATTTTTCTGGACTATGTTGTGAACAAT TATGCAGGAGACGATGTCCAATGAGCATGCCATGCGGTTTCCCTTTGTTGGGAGTGCAATGTTGCTATCACTTTTCTTAC TCTTTAAGTTTCTCTCAAAGGACTTGGTGAACACTGTTTTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCGCTCTCG TATGTTATTTTCTTTGTTTTCATTGTACTTGTTATGTAGTCCATAGAATCATTTTTTACATATATGCTATTTTATCGCTC ATTTTTTCTTCTACTGTCTACAGGGCAACATTATTGCCATCCATTAAACGCTTTCTGCCAAATCATTGGAATGACGACAA CATAGTCTGGCGTTTTCCATATTTTCGTTGTATGTGACATTCTGCCTCCTTATTTTTCTTTTGCTTTGATAGATGTTTTT CTCTTCTTCCTTTGAGTTTGTAGTTCAATGATGGCATTCTTTGGCTATTATCAATCATAACACCGATAGCTGCAACTTGT TCTGTGATGTACCTAATTGAATATCAAAATGTTTGGGAGTTCTTTATTTATTGACAATGCATATACTGTTTCAACTAGAT GTTTCATTCTAAGTTTTAACCCTTTTTTTAGTGAAATTACTTAATATCTAAGAGTAGGTCATGGTGCATGTTTGTATCTA TTTTTTAATGCTCCTTGCACATAAAAATTCATTCCCAAATGAATCGTGAACTATTCTTGAAAAGGGATTTTAAAATTACC AAGTAGAACAAAGAATAATGCTTAATGCATTCATTCCTTGTTAAAGTGTGTTGTTTTTGCTACTTTCAGCTGTTTGCACT TGATCTAGTTGACATTAAGTTGCTTCTATCATGCAGAATGATATTTTTCCTTACACCTTTCTTAAACAGCTTTAGAGGTT GAGTTTACAAGATCACAGATAGTTGCTGCAATCCCTGGGACATTTTTTTGTGCTTGGTATGCTTTGCGGAAGCATTGGTT GGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGTTTGGCACTTTACCTGCATTTATGTAATAATATGTACATCTA TGTTTGTATATATAAAATTTAATTGATTGGTACACAACCAATCAGAAACAACTGATTTTAAATAAAAATCTGCATACTAA CAACCAGTTATAGCTTTTATTCATGCCGATTATAAATAGATTGAAACTGGTCGAATTATAAATCGATTGAAACTGATAGA TAATAGAAAACCTGTATGCCGGCAGTTTTACTTAATAAACTTATATATTTATGGAATTATGGTATCTAATTGACAATAAA AAATGGACAGCATTATTCAAGGTTCGATAGTGGTAGGTTTGCTTACAGATTTTGAGAGTATAGATACCAATTTACTTGAC AAATATCAAATGACAACAATTAGAAAATGTACATATACATGTCCATCAACCATTAATTATTTTAAGGATACTGAACCAAT TATATTTGCATGTCCATCAACCATTTCCTATAATAATTCATTTTTGTCAATTGAACCAGTAAGTCATGCATTTTATACGA TTAATGGTGTACATTTACATGTCCATCAACCATTAATTATTTTAAGGATACTGAACCAATTATATTTGCATGTCCATCAA CCATGTCCTATAATAATTCATTTTTATCAGTTGAACCAGTAAGTCATGCATTTTATACGATTTAAATCAGTAAACAGGAT GTGATACCTATTACTTCATCCTTGACATTTACAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTC TCTTGGTAGGTATTTTTAACTGTAATTAATGGTGCTCAAGGCTTCAATATTTTTAAAACCATTTAATTGCATGTTTTAAA AGATCTTGTTTTCTATACCAAAAATCCGTTTGCTGCAGATAAACCTGTCCACTCATCTTTGTCTGTTTCTTTTAAGAAAT TTTAGAGAATCATGTGGCTTTTGTGGTTGTTATAAAATACAATAAAATGGACTTGAGCTTGATTTACTTGCTCTCTATTG GTTTGTCCATTTACTTTTGAGTTTTGACCATCTCAATCACATGTAAACTCATAAAATGCCTGATTAGATTGCCTTCTATA TTTTTTCCCATGTATATAATCAAATCTTACCTTCCAAAAGCATGTGATTTTTCCCATGTATATTATTCTTTGACTTTTAA ATTCATGTATTTTGCAGGCTGGTCTTTTTGTCTATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTTAGCGTTGCC AAATCATTCGATGCTCCAATTAAGGTTAAAATCTCGCGAACCAAAATTGAACTTTTTGTTTCAGATGAAAAATGTAACAA TTTTTCTGATACATTTTTTTTTCCAGCTATTGTTCCCTACAGCAGATGCTGTGAGGCCATTTTCAATGCTTGGGCTTGGT GATATTGTTATCCCTGGTAGGATGACTCATTGATGCCGTATTGATTTTTTTTTCCTTTTTGGTGAAATTACCTGTAATAA TGTAGTTCTAAGTATATATCTGCGATTGGATTTTTTAACCTGTGTTTGGAAGATTTTGGGAGAAGGGGATAGAATGGAAA AGGGATCAAATGAACGTTAATCATAGGGAAAGAGAGTTTCACATCGCTGTCATGTGATGAGTTCGCATTTGTGAGGCTAA CGATTCCCTCTAATTTGCCGGGCCTGTTGTGAAAAAAGCCTGCTTGGACCAGTCCAGTGGAACTTCCATACTAAAGAAAA ATGGAAAGGGAAGGGGTGGGGTGGAGTGGAAAAGAGATATGTTCCCTTGTTTCCCCCTGTTTGGATGATTAAATTAAATG AGGGAAGGAAGAGGAAGGTAAAGGTCGCGTGTGTAGAGTTTCCTCATAACCTACATTGGAGGGGAACAAAAAGTGGGGGG GAAGGGCTTTCCCCAAATTCTCTTCCCCCCCACAAGTTTTTGGAATTCCAAACAAACAAGGCGACTTATCCCCATTTCTA CCTTTTAATTCTCTAACAGTAAGAGAACAAATACGGCAACCAACTAGAAAACAACAGAGAGAGACTGAGAGGGAGATAAC ACATATCTCTAACATAGTTCAATTCTCCCATTATTCCTCATGCAAGTGACGATACAATCCAACTCCCTCGGTATCTAGGG CTTCAAAGTTCTCCTAGTTTTAGTCATGAGACATTGTCGTGTCCCTTATTTTTTCCATTATGAAAAACTTTTTGTTGAAT TAAATTTGTCTTTGCTTGATTGGACAAACTGTAGCATGTGGTGGTAGGAGACTGTTTTTAAAGAGGACTTTACAAATATT TTTTGCTTCTTATGAATTTAAAATACTGATTTTAAGTTGTAAGTCAGATTATATGCTACTTCATGCTTTTGCTTTCAAGA TAATTTCAGTTATTAGTTTACTGCCTCAAATTAGAGTGGCGATGCTTCTCGTTGGATGTGTCAGAAATTAGTCTGTATCA ATAAAGACTAGTGTTATTTAAAAATTTTGAAATGTGTATATGCATGCAGTCAATTGATGTGTAGAATCCATTCATACATA TATGCAAAAGTAAATAGTTTATCTACAATCACTTGGTTGTTACATCTATTTTGACCACAAATGTTTTCTCTTCAGGTATT TTTGTAGCATTGGCTTTACGGTTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAAAGTGCATTTTTAGGATACGC TGTTGGTGTGATCCTTACAATTGTAGTGATGAATTGGTTTCAGGCTGCACAGGTGACTGATAGTTCCATTTTATTCCTTT TTTATTGATAGTTTTTTTTGGGGGGGGGGGTCAGGGTTGTAATCATTATTGCCCAATGCACTACTAATACATGGATACCT TAGTTTGTGGAACTATCATGGATTTTGGAGACTATCCTTCTCTACTAACGTTTTCCCCTTTATTGTATTCTTGTTGTCAG CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCGTATGGAATGGTGAAGTCAAACAGGT TTGTTTCTCTTTTCTCATATCAGTGTTACTCCATCCTTTTTATGTGTTTTATTTGCTTCATGTTTTTTTTATATAGCATG TATAATGGAAATAGTGAATATTATTTTCAATGTAACCCCATTAAGAAATGATAAAGTGCCACATATTGCTGTAAAATCTT TTGGCAGTTTCTTAAAAAGGATTATATGAGGCATGAAATCGGCCACTGATAGTGCCATACATGGAACTCATTGCCAGTAG ACCAACTTTATCCCATATAGCAATAATTGACATCATCTTTGGCACCACTAGCAAGAGAGTATATTTTCTAAATAGCCTTC TATATTGAAAATTATCATAGACATGGTTGTGTGATTTAAGAATTTTGCAGTGGATGCCTGGCATTTATGCTTGCTAGAGG TGGTTTAGCTAAGTTAGTTCTGACAACTTTTTCATTTTTACTTATGCAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCA ATTCATCCCAAGAAGAAGTTGATGCTAAAGTTACCAAAAAGGATGAATAA
CDS sequence (LotjaGi1g1v0399600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAATGAGCATGCCATGCGGTTTCCCTTTGTTGGGAGTGCAATGTTGCTATCACTTTTCTTACTCTTTAAGTTTCT CTCAAAGGACTTGGTGAACACTGTTTTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCGCTCTCGTATGTTATTTTCT TTGTTTTCATTGTACTTGTTATGGCAACATTATTGCCATCCATTAAACGCTTTCTGCCAAATCATTGGAATGACGACAAC ATAGTCTGGCGTTTTCCATATTTTCGTTCTTTAGAGGTTGAGTTTACAAGATCACAGATAGTTGCTGCAATCCCTGGGAC ATTTTTTTGTGCTTGGTATGCTTTGCGGAAGCATTGGTTGGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGGAA TTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTTTTTGTCTATGACATTTTCTGGGTT TTCTTCACTCCTGTGATGGTTAGCGTTGCCAAATCATTCGATGCTCCAATTAAGCTATTGTTCCCTACAGCAGATGCTGT GAGGCCATTTTCAATGCTTGGGCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTACGGTTTGATGTGT CCAGAGGAAAACAGCCCCAGTATTTCAAAAGTGCATTTTTAGGATACGCTGTTGGTGTGATCCTTACAATTGTAGTGATG AATTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCGTATG GAATGGTGAAGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCATCCCAAGAAGAAGTTGATGCTAAAG TTACCAAAAAGGATGAATAA
Protein sequence (LotjaGi1g1v0399600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSYVIFFVFIVLVMATLLPSIKRFLPNHWNDDN IVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWV FFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVM NWFQAAQPALLYIVPSVIGFLAAHCVWNGEVKQLLEFDESKTANSSQEEVDAKVTKKDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 3.9E-160 | ||
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SMART | 1 | 268 | 268 | 2.9E-83 | ||
| PANTHER | 1 | 298 | 298 | 3.9E-160 | ||
| Pfam | 1 | 280 | 280 | 8.6E-85 | ||
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 37 | 9 | - | – | |
| Phobius | 38 | 65 | 28 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 66 | 94 | 29 | - | – | |
| Phobius | 95 | 114 | 20 | - | – | |
| Phobius | 115 | 119 | 5 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| Phobius | 140 | 145 | 6 | - | – | |
| Phobius | 146 | 170 | 25 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 190 | 209 | 20 | - | – | |
| Phobius | 210 | 220 | 11 | - | – | |
| Phobius | 221 | 243 | 23 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 244 | 248 | 5 | - | – | |
| Phobius | 249 | 267 | 19 | - | – | |
| TMHMM | 250 | 267 | 18 | - | – | |
| Phobius | 268 | 299 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0399600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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