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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0404000 |
| Transcript ID | LotjaGi1g1v0404000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT4G32780.1 phosphoinositide binding protein; Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|K7KIW2|K7KIW2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89289336..89293696) extracted from Lotus japonicus Gifu genome v1.2.
AACAGAATTCAACAAAAGATGGGGGTAAAGAAGAAGAAAAAAAAAACCCTTTTGTCGTTTGCTTTGATAGATGAAAATAA TAGATTCACGCGGGAACACTGTAGCCAAATGACATTGTCCACACTCCACAGCAAGGTCAACTGTAAAACTAACCCAATTG ACAGAACATTATAATTAAACATTATCTAGTTTTTGCAAAATAATGTAAAGAAGCAGCGTACAAAAGGGTCCCCAAAGCTC TATTTTAGAAAGTGATAGGGGTGACAAAGGAGAATCTAGTAATGATGAACTCGGCTGCCATAAAAATAGGTCTTTAACTC TTTATCAATAAAGCACTAAGAGGTGGAATTCAAAAGCAACTTAAGTTGGAAGACAAGAATGAATGGCCTCTAAATTGGGT CCTTTCATTCATCACTCATCAGTCATCACTAGGAATCTTTTATGTTGTTTTCATTTTCCTTAATAAAGAAAACTTGGAAA CAACATCATATTTTCCTTTTAAATATCACACTGTTGCTCATCAGTCCTCTCATCATCTTGTTCTTGCTCTCAATTCTCAC TCTCACTATGAGATTTTTAATCTCCAGTCTCCTGAGTTTTGAGTGATATTGAGGCATTAGGGTATCAATATTTACAAGTG AGTGTTCACTTTGTTTTTTCATTCTAAGACAATTTCTCAATTTTCTCCATCAGGCTCCAAAAGTTATCCTACTAATATAT ATATATACTTCACATGATGAAACAAAAAAGAATCCACACTTCTTCTAATTCTTATGATTAAGCTCCATTCAGGTGAAATC ATTGCACTAATTTTCTGTGATTATTTACAATGTCAGTGAGCTCCAGCATGCCTAGCTCTAAATGCTCAGTTCATCACCTA GGGAACATTGATGAGAATGCTCCTGCAGATTGGCCTGCATCATCTGGTGCTCAGCTTGATACTCCAACTGAATCTATGGA GTTCCTTGCTAGATCATGGAGTCTTTCAGCCATGGAACTCTCCAAAGCACTGCATAGCACCACCAATATTAAGACCTCCA CTGGTGTTGAGATGCCAAGTTCGTGCCCTTCTGGTAATCAATTATGTACCACGGGTTCTGCTGCTTCAAAGGATTCTGTA AGAACATTTTCTTTGAGAGGATTATTTAAATTAGGCCATTAGCAATACTTTTAGCTACTTCCTTTTTAGTTGACAATGCA TCATGTGAACTGAATGAAAATCATGCAAACACTATATATATTAGTTCTCGTAAAACAGATTTTTCACACACACACACACA CACACACACCTGTGCAGGGTAAAGAAAAGGAAAAAGGAATATCTATTCTAAACCCTCCAAAAGGGAATTTCAAGTGAAAG AAAATTCCCAGAATAGACATATAGTTTTCTGGTCAAGGATTCTTCAATAGTCTCATGTCTTCCTGTTGCTTTATACATTA ATATTGGTTCTGGATTTCTGATGCAAGTTACTTTAGCAGTTATCTGACAGCTCTTGCCCTCCAATTTCACCAAAAGACAG TGATGAAACGAAGGTACTTTACTGCTCCACGTCTTATATGGTAACAAAAATAATCACAAGACACAAGAAACAATTTGGTC CATTTTTCAGCTTCAATTAAGAGTTGGAAGACTGTCATTTGGGGTTAGCTTGCTTTCATGAAGTTGTTTTATAGCATGTT TTGATCAATTTCTCTTCATTCAAAATCAATTCGAAAACTCATAAGCGACTCACATAAGCCTATCCCCAGGACTAATTATG ACTTTGGAAACAATTGTAGAAGAACTTAGTTTCTCCTTGACAATAACTGCGTGCCATCAACAGTTGACACCCATAACTAT CAAACCTTGTTTATCACAGTGAGTCAATCTTTAGCGTGCCTAAATCATTGACATACCAGTCTGTCATATGCAGGATTTAT TTTTATTCCATCAAGCAATCAATCCAGAATTCCTTTACAGTCAGAACTTGCTGAGGAATGGGGTATCTTGCATTTAACCC TATGATCATCATAGACTCAAATGCGAGCTTAATGTATTACTATACTAATCAGTGGTTTCTTTCCTAATTTTTAAATTCTT GGTGCAAATTTTTGCACCAGATTTACAAGGGATTGCTTAGAGGGAAGACAATGGGTAGGTGGATGAAAGACCAGAAAGAG AGGAAAAAGCAAGAAATTAGGAGCCAAAATGCTCAGTTGCATGCTGCAGTATCTGTGGTTGGTGTTGCTGCTGCTGTTGC AGCAGTGGTAGCTTCAATAGCATCACCTGAAATGCCTAATGCCGACCAAAAGAACCCTACCATAGCCTCTGCTGCAATTG CATCTGCAGCAGCTTTAGTGGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGGGCTGAACATGACCAAATTATAACA GTAGTCGACTCTGCCATTAATGCAAAAACCAATGGAGATATTATGGCTCTAACAGCCGGAGCAGCCACAGGTATCAAAAC TTGAAGTTCAATTCTCAATTTCAGACCAAAATGAACCGTGTTTTATGACAGCTCCACTTATTTTTATGAAAGTAGACTCC ATCTAAAATTCATACACCAAGTCATCTGACTCCATAAATTAATCTAAGCTCAAAGGAAAAAAGTGAAAAGGACAATAAAT AAACTCATACTTACTGAGCAACATAATAGTAAGGAAAACTCGGCTAAAACCTGCATTCTATGATTTATTTCCCCTTGATA TAGTCAGATTCTAACACAAAATAAGAGGAAATATAATGAACTAAATGCTTTGTTGGCAGCTTTGCGAGGAGCGGCTACTC TAAAGGCAAGGCTGCAAAAGGGGCTTGGAGCCACTGCAATTCCTCTAGTTGACGAGAAGCATGATCAAAGCAAAGAAGCA AACATTTTGACAGCACTGGACTGTGTCTTTAGAGGAGGACAACTTCTCAAACGTACAAGAAAAGGTATGTTTACTGAAAT GTTTGCAAAAATGGCTTCATTTGAAAAGAATAAAAGGATACATGTGTATAGAAGTTTACACCTCTAATGTATGCAAAGAT GCTGTTTTATCTTTTGCAGGAGCTCTGCACTGGAAGCAAGTGTCTTTCAATATAAACTCAAATTTGCAGGTAATTGATAG AAGAGACTTCATACATTCATTAACAGATCATAGGCATGAGTTCCAATAATTTCCAAGAGCTTAGCTGCCTAGAAAGTTTA ACTAGTTCTGGCATAGATCAATATTTCAAGGCTCCTGTTGGTCAATCTTTTATTATTATTTGGAATATCTACTAAACACA AAATGACAACAGGTCGTCGCAAAAATGAAAAGCAAGCATATGGCAGGAACATTCACAAAAAAGAAGAAATGTAAGCAAAG TTTCTTACACAGCACTTACTTATTTTATTCCTGCCACTGGTCAACAATGTTAAGGTATGGCCTAAAATGACAGATATAGT CACTGGAGTTGGCATTGATGTCCAAGCTTGGCCCGGAAGGGAGAAGGAAGACATCGGTGAAAAGAGGGCATACTTTGGAA TAAAAACAGCAGACAGGATAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGCAC ATATTGAATTGCAGTGCCAAAGTAGCATAATAAAAAATAATAAAATTTCCATTGGGGTTGTTTGTAAATATACATTTTAC TTTTCTTTCCTTTCTTCTCACAGTGATTGGAGGGGGTTACACAGATGGATTGTAGATTTTACAGTCACTGTATGAATGTA AGATTTCACCGACAAAATTGTTAGATTTGCATAAGTTCTGTGAAGATGTGTCGGATCCTATAGTTCCTTCAGAAAATCAA CATTATCAACAAATACCTGCATGAAGTAACAAACAAGTCAGACTATAAACTAAGACGCAGCATGTGAATTCGAACATAAT GAGAAGGCTTCCATCAGTGCATTGTACTGCACAAAAAGTCTAAGAGGAATATGTCTAGAGAACTCTAGGTGACAGGTTTG AAAAAAAGTGGTAACAATATGAGAACACATTATTTCACACATATGCTTGGTCTGTTTTTTAAAAAGTGATTAATTTACAA GGTAAATGTGTTGATTGTTTAAAAAAACGAATCAACTACACAGTATGTGGAAAAGTGTCACTGACAATAAAAGTTTGTTA CTAGCATTCCTCACATTAGAAAATTCGATACAGAAATCAAACTCTAGAATATCTCTCTGTCTTTTTGGTTTGGTTCTTTA CATAATTCATTAATTTACCCACATGTCATTCCTCTCATGACTACCCTCTTTGTTACGCATTACTCATACCACCTATCAAT TCATCTACTAAACCCTTATGAGTTTCATCAATGCATGTAGG
CDS sequence (LotjaGi1g1v0404000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCCAGCATGCCTAGCTCTAAATGCTCAGTTCATCACCTAGGGAACATTGATGAGAATGCTCCTGCAGATTGGCC TGCATCATCTGGTGCTCAGCTTGATACTCCAACTGAATCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCAGCCATGG AACTCTCCAAAGCACTGCATAGCACCACCAATATTAAGACCTCCACTGGTGTTGAGATGCCAAGTTCGTGCCCTTCTGGT AATCAATTATGTACCACGGGTTCTGCTGCTTCAAAGGATTCTTTATCTGACAGCTCTTGCCCTCCAATTTCACCAAAAGA CAGTGATGAAACGAAGGATTTATTTTTATTCCATCAAGCAATCAATCCAGAATTCCTTTACAGTCAGAACTTGCTGAGGA ATGGGATTTACAAGGGATTGCTTAGAGGGAAGACAATGGGTAGGTGGATGAAAGACCAGAAAGAGAGGAAAAAGCAAGAA ATTAGGAGCCAAAATGCTCAGTTGCATGCTGCAGTATCTGTGGTTGGTGTTGCTGCTGCTGTTGCAGCAGTGGTAGCTTC AATAGCATCACCTGAAATGCCTAATGCCGACCAAAAGAACCCTACCATAGCCTCTGCTGCAATTGCATCTGCAGCAGCTT TAGTGGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGGGCTGAACATGACCAAATTATAACAGTAGTCGACTCTGCC ATTAATGCAAAAACCAATGGAGATATTATGGCTCTAACAGCCGGAGCAGCCACAGCTTTGCGAGGAGCGGCTACTCTAAA GGCAAGGCTGCAAAAGGGGCTTGGAGCCACTGCAATTCCTCTAGTTGACGAGAAGCATGATCAAAGCAAAGAAGCAAACA TTTTGACAGCACTGGACTGTGTCTTTAGAGGAGGACAACTTCTCAAACGTACAAGAAAAGGAGCTCTGCACTGGAAGCAA GTGTCTTTCAATATAAACTCAAATTTGCAGGTCGTCGCAAAAATGAAAAGCAAGCATATGGCAGGAACATTCACAAAAAA GAAGAAATATATAGTCACTGGAGTTGGCATTGATGTCCAAGCTTGGCCCGGAAGGGAGAAGGAAGACATCGGTGAAAAGA GGGCATACTTTGGAATAAAAACAGCAGACAGGATAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTT GAGGGGATCCAGCACATATTGAATTGCAGTGCCAAAGTAGCATAA
Protein sequence (LotjaGi1g1v0404000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSMPSSKCSVHHLGNIDENAPADWPASSGAQLDTPTESMEFLARSWSLSAMELSKALHSTTNIKTSTGVEMPSSCPSG NQLCTTGSAASKDSLSDSSCPPISPKDSDETKDLFLFHQAINPEFLYSQNLLRNGIYKGLLRGKTMGRWMKDQKERKKQE IRSQNAQLHAAVSVVGVAAAVAAVVASIASPEMPNADQKNPTIASAAIASAAALVASHCIEIAEDMGAEHDQIITVVDSA INAKTNGDIMALTAGAATALRGAATLKARLQKGLGATAIPLVDEKHDQSKEANILTALDCVFRGGQLLKRTRKGALHWKQ VSFNINSNLQVVAKMKSKHMAGTFTKKKKYIVTGVGIDVQAWPGREKEDIGEKRAYFGIKTADRIIEFECGSKGDKQFWL EGIQHILNCSAKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 165 | 165 | - | – | |
| PANTHER | 5 | 413 | 409 | 5.3E-181 | ||
| PANTHER | 5 | 413 | 409 | 5.3E-181 | – | |
| Pfam | 35 | 280 | 246 | 3.5E-84 | ||
| MobiDBLite | 87 | 105 | 19 | - | – | |
| MobiDBLite | 87 | 106 | 20 | - | – | |
| Coils | 151 | 171 | 21 | - | – | |
| Phobius | 166 | 189 | 24 | - | – | |
| Phobius | 190 | 414 | 225 | - | – | |
| Gene3D | 282 | 413 | 132 | 1.3E-5 | ||
| SUPERFAMILY | 289 | 407 | 119 | 2.32E-7 | – | |
| ProSiteProfiles | 300 | 408 | 109 | 6.945 | ||
| Pfam | 306 | 410 | 105 | 5.4E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0404000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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