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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0404000 |
| Transcript ID | LotjaGi1g1v0404000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT4G32780.1 phosphoinositide binding protein; Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|K7KIW2|K7KIW2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89289848..89293488) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTCATCAGTCCTCTCATCATCTTGTTCTTGCTCTCAATTCTCACTCTCACTATGAGATTTTTAATCTCCAGTCTCC TGAGTTTTGAGTGATATTGAGGCATTAGGGTATCAATATTTACAAGTGAGTGTTCACTTTGTTTTTTCATTCTAAGACAA TTTCTCAATTTTCTCCATCAGGCTCCAAAAGTTATCCTACTAATATATATATATACTTCACATGATGAAACAAAAAAGAA TCCACACTTCTTCTAATTCTTATGATTAAGCTCCATTCAGGTGAAATCATTGCACTAATTTTCTGTGATTATTTACAATG TCAGTGAGCTCCAGCATGCCTAGCTCTAAATGCTCAGTTCATCACCTAGGGAACATTGATGAGAATGCTCCTGCAGATTG GCCTGCATCATCTGGTGCTCAGCTTGATACTCCAACTGAATCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCAGCCA TGGAACTCTCCAAAGCACTGCATAGCACCACCAATATTAAGACCTCCACTGGTGTTGAGATGCCAAGTTCGTGCCCTTCT GGTAATCAATTATGTACCACGGGTTCTGCTGCTTCAAAGGATTCTGTAAGAACATTTTCTTTGAGAGGATTATTTAAATT AGGCCATTAGCAATACTTTTAGCTACTTCCTTTTTAGTTGACAATGCATCATGTGAACTGAATGAAAATCATGCAAACAC TATATATATTAGTTCTCGTAAAACAGATTTTTCACACACACACACACACACACACACCTGTGCAGGGTAAAGAAAAGGAA AAAGGAATATCTATTCTAAACCCTCCAAAAGGGAATTTCAAGTGAAAGAAAATTCCCAGAATAGACATATAGTTTTCTGG TCAAGGATTCTTCAATAGTCTCATGTCTTCCTGTTGCTTTATACATTAATATTGGTTCTGGATTTCTGATGCAAGTTACT TTAGCAGTTATCTGACAGCTCTTGCCCTCCAATTTCACCAAAAGACAGTGATGAAACGAAGGTACTTTACTGCTCCACGT CTTATATGGTAACAAAAATAATCACAAGACACAAGAAACAATTTGGTCCATTTTTCAGCTTCAATTAAGAGTTGGAAGAC TGTCATTTGGGGTTAGCTTGCTTTCATGAAGTTGTTTTATAGCATGTTTTGATCAATTTCTCTTCATTCAAAATCAATTC GAAAACTCATAAGCGACTCACATAAGCCTATCCCCAGGACTAATTATGACTTTGGAAACAATTGTAGAAGAACTTAGTTT CTCCTTGACAATAACTGCGTGCCATCAACAGTTGACACCCATAACTATCAAACCTTGTTTATCACAGTGAGTCAATCTTT AGCGTGCCTAAATCATTGACATACCAGTCTGTCATATGCAGGATTTATTTTTATTCCATCAAGCAATCAATCCAGAATTC CTTTACAGTCAGAACTTGCTGAGGAATGGGGTATCTTGCATTTAACCCTATGATCATCATAGACTCAAATGCGAGCTTAA TGTATTACTATACTAATCAGTGGTTTCTTTCCTAATTTTTAAATTCTTGGTGCAAATTTTTGCACCAGATTTACAAGGGA TTGCTTAGAGGGAAGACAATGGGTAGGTGGATGAAAGACCAGAAAGAGAGGAAAAAGCAAGAAATTAGGAGCCAAAATGC TCAGTTGCATGCTGCAGTATCTGTGGTTGGTGTTGCTGCTGCTGTTGCAGCAGTGGTAGCTTCAATAGCATCACCTGAAA TGCCTAATGCCGACCAAAAGAACCCTACCATAGCCTCTGCTGCAATTGCATCTGCAGCAGCTTTAGTGGCCTCTCACTGC ATTGAGATTGCAGAAGATATGGGGGCTGAACATGACCAAATTATAACAGTAGTCGACTCTGCCATTAATGCAAAAACCAA TGGAGATATTATGGCTCTAACAGCCGGAGCAGCCACAGGTATCAAAACTTGAAGTTCAATTCTCAATTTCAGACCAAAAT GAACCGTGTTTTATGACAGCTCCACTTATTTTTATGAAAGTAGACTCCATCTAAAATTCATACACCAAGTCATCTGACTC CATAAATTAATCTAAGCTCAAAGGAAAAAAGTGAAAAGGACAATAAATAAACTCATACTTACTGAGCAACATAATAGTAA GGAAAACTCGGCTAAAACCTGCATTCTATGATTTATTTCCCCTTGATATAGTCAGATTCTAACACAAAATAAGAGGAAAT ATAATGAACTAAATGCTTTGTTGGCAGCTTTGCGAGGAGCGGCTACTCTAAAGGCAAGGCTGCAAAAGGGGCTTGGAGCC ACTGCAATTCCTCTAGTTGACGAGAAGCATGATCAAAGCAAAGAAGCAAACATTTTGACAGCACTGGACTGTGTCTTTAG AGGAGGACAACTTCTCAAACGTACAAGAAAAGGTATGTTTACTGAAATGTTTGCAAAAATGGCTTCATTTGAAAAGAATA AAAGGATACATGTGTATAGAAGTTTACACCTCTAATGTATGCAAAGATGCTGTTTTATCTTTTGCAGGAGCTCTGCACTG GAAGCAAGTGTCTTTCAATATAAACTCAAATTTGCAGGTAATTGATAGAAGAGACTTCATACATTCATTAACAGATCATA GGCATGAGTTCCAATAATTTCCAAGAGCTTAGCTGCCTAGAAAGTTTAACTAGTTCTGGCATAGATCAATATTTCAAGGC TCCTGTTGGTCAATCTTTTATTATTATTTGGAATATCTACTAAACACAAAATGACAACAGGTCGTCGCAAAAATGAAAAG CAAGCATATGGCAGGAACATTCACAAAAAAGAAGAAATGTAAGCAAAGTTTCTTACACAGCACTTACTTATTTTATTCCT GCCACTGGTCAACAATGTTAAGGTATGGCCTAAAATGACAGATATAGTCACTGGAGTTGGCATTGATGTCCAAGCTTGGC CCGGAAGGGAGAAGGAAGACATCGGTGAAAAGAGGGCATACTTTGGAATAAAAACAGCAGACAGGATAATAGAATTTGAA TGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGCACATATTGAATTGCAGTGCCAAAGTAGCATAATA AAAAATAATAAAATTTCCATTGGGGTTGTTTGTAAATATACATTTTACTTTTCTTTCCTTTCTTCTCACAGTGATTGGAG GGGGTTACACAGATGGATTGTAGATTTTACAGTCACTGTATGAATGTAAGATTTCACCGACAAAATTGTTAGATTTGCAT AAGTTCTGTGAAGATGTGTCGGATCCTATAGTTCCTTCAGAAAATCAACATTATCAACAAATACCTGCATGAAGTAACAA ACAAGTCAGACTATAAACTAAGACGCAGCATGTGAATTCGAACATAATGAGAAGGCTTCCATCAGTGCATTGTACTGCAC AAAAAGTCTAAGAGGAATATGTCTAGAGAACTCTAGGTGACAGGTTTGAAAAAAAGTGGTAACAATATGAGAACACATTA TTTCACACATATGCTTGGTCTGTTTTTTAAAAAGTGATTAATTTACAAGGTAAATGTGTTGATTGTTTAAAAAAACGAAT CAACTACACAGTATGTGGAAAAGTGTCACTGACAATAAAAG
CDS sequence (LotjaGi1g1v0404000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCCAGCATGCCTAGCTCTAAATGCTCAGTTCATCACCTAGGGAACATTGATGAGAATGCTCCTGCAGATTGGCC TGCATCATCTGGTGCTCAGCTTGATACTCCAACTGAATCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCAGCCATGG AACTCTCCAAAGCACTGCATAGCACCACCAATATTAAGACCTCCACTGGTGTTGAGATGCCAAGTTCGTGCCCTTCTGGT AATCAATTATGTACCACGGGTTCTGCTGCTTCAAAGGATTCTCAGTTATCTGACAGCTCTTGCCCTCCAATTTCACCAAA AGACAGTGATGAAACGAAGGATTTATTTTTATTCCATCAAGCAATCAATCCAGAATTCCTTTACAGTCAGAACTTGCTGA GGAATGGGATTTACAAGGGATTGCTTAGAGGGAAGACAATGGGTAGGTGGATGAAAGACCAGAAAGAGAGGAAAAAGCAA GAAATTAGGAGCCAAAATGCTCAGTTGCATGCTGCAGTATCTGTGGTTGGTGTTGCTGCTGCTGTTGCAGCAGTGGTAGC TTCAATAGCATCACCTGAAATGCCTAATGCCGACCAAAAGAACCCTACCATAGCCTCTGCTGCAATTGCATCTGCAGCAG CTTTAGTGGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGGGCTGAACATGACCAAATTATAACAGTAGTCGACTCT GCCATTAATGCAAAAACCAATGGAGATATTATGGCTCTAACAGCCGGAGCAGCCACAGCTTTGCGAGGAGCGGCTACTCT AAAGGCAAGGCTGCAAAAGGGGCTTGGAGCCACTGCAATTCCTCTAGTTGACGAGAAGCATGATCAAAGCAAAGAAGCAA ACATTTTGACAGCACTGGACTGTGTCTTTAGAGGAGGACAACTTCTCAAACGTACAAGAAAAGGAGCTCTGCACTGGAAG CAAGTGTCTTTCAATATAAACTCAAATTTGCAGGTCGTCGCAAAAATGAAAAGCAAGCATATGGCAGGAACATTCACAAA AAAGAAGAAATATATAGTCACTGGAGTTGGCATTGATGTCCAAGCTTGGCCCGGAAGGGAGAAGGAAGACATCGGTGAAA AGAGGGCATACTTTGGAATAAAAACAGCAGACAGGATAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGG CTTGAGGGGATCCAGCACATATTGAATTGCAGTGCCAAAGTAGCATAA
Protein sequence (LotjaGi1g1v0404000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSMPSSKCSVHHLGNIDENAPADWPASSGAQLDTPTESMEFLARSWSLSAMELSKALHSTTNIKTSTGVEMPSSCPSG NQLCTTGSAASKDSQLSDSSCPPISPKDSDETKDLFLFHQAINPEFLYSQNLLRNGIYKGLLRGKTMGRWMKDQKERKKQ EIRSQNAQLHAAVSVVGVAAAVAAVVASIASPEMPNADQKNPTIASAAIASAAALVASHCIEIAEDMGAEHDQIITVVDS AINAKTNGDIMALTAGAATALRGAATLKARLQKGLGATAIPLVDEKHDQSKEANILTALDCVFRGGQLLKRTRKGALHWK QVSFNINSNLQVVAKMKSKHMAGTFTKKKKYIVTGVGIDVQAWPGREKEDIGEKRAYFGIKTADRIIEFECGSKGDKQFW LEGIQHILNCSAKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 166 | 166 | - | – | |
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 5 | 414 | 410 | 6.6E-181 | ||
| PANTHER | 5 | 414 | 410 | 6.6E-181 | – | |
| Pfam | 35 | 281 | 247 | 2.6E-84 | ||
| MobiDBLite | 86 | 106 | 21 | - | – | |
| MobiDBLite | 86 | 107 | 22 | - | – | |
| Coils | 152 | 172 | 21 | - | – | |
| Phobius | 167 | 190 | 24 | - | – | |
| Phobius | 191 | 415 | 225 | - | – | |
| Gene3D | 283 | 414 | 132 | 1.3E-5 | ||
| SUPERFAMILY | 290 | 408 | 119 | 2.32E-7 | – | |
| ProSiteProfiles | 301 | 409 | 109 | 6.945 | ||
| Pfam | 307 | 411 | 105 | 5.4E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0404000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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