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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0415600 |
| Transcript ID | LotjaGi1g1v0415600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhamnogalacturonate lyase; TAIR: AT1G09890.4 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1JV26|I1JV26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0415600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90846267..90850600) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAGCACAAACTGTTTATTTTTTTTCTTTTCCAAACGTTGTGCTAAAAACCAGCCACTGTCACTGAACCATATAAAGG ACATGCTTTCTTCTCATTAGAAAGATAATTTCTTAGCCATTTTCAAACCACTCTGAATCTGTGAGACCTTCATTGTGCAC ATATCTGGTTTACTGCTACTACAACCATGCCACCTCTTGGGGTGCAACTCAGTATTCAAGATCGTCATGTATTTAAATCT CTCTAGAATGATTTTCCTTCCATCTGAATGAATAACTTTTACACTCGTCTCAATTAGATTGTTTTAAGACTATTATAAAA CTTCATGTGTAGGTGGTGATGGACAATGGCATACTACAAGTCACATTGTCCAATCCTGAGGGAATTGTGACTGGAATTCA GTACAATAGCATTGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGGTACACCCTACAAAGACACAATTGTT AATTTTTACAGATTAAGGAACATTGTTTGGCTCTCCTCCCAGTAACACAATTCTTTTTGTAACTTCATGTAGATATTGGG ACCTTGTTTGGAGCTCACCAACCAGTACAGGAACCACCGGTAGATTTGATGTGTATGTCTCTCTCTCAGCTATGTGTGTT GATAATTAGTTTCACAAACTCATGGCATATATTTGAATTTTCTGTTTGTTCCTCCCATTATATCTATAATCATCTAGTCA CGTCTAGTTTATTTTCACATGTTTTCAAAATCTTTATATTGTAAGTAAAGCACATTTTGTGATACACGTTTGTGAGGGCA GGATAAAGGGAACCACTTTCAAAGTTATAGTGGAAAATGAGGACCAAGTTGAGGTATCCTTCACTAGGATGTGGGATGCT TCCCTTGAGGGCAAGTTGGTTCCTTTGAATATTGATAAGAGGTTAGTGAAACCTACCCTCAATAACATTGTTAAGATGGT GGCACTGGATATGAAAAATCTATATCTATTATCGATTTTATTATGCATGTGTGACTTTTAGGTTCATAATGCTTCGTGGT TGTTCTGGCTTCTACTCGTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATAGC TTTCAAGCTTAGAAAAGAGAAGTACGTAAGCATTCAAAGCTTAACATTTTATTTTATGTTCTGTAATTAACTTTCTTGCT TCTAGTCATTGTTGATCATAGGCTAATATATATGCTATGTTTTGTGCGGTCAGGTTCCATTATATGGCAATGGCAGATAA TAGACAAAGAGACATGCCTCTTCCAGATGACAGAGTACCACCTAAAGGCCAACCACTTGCATATCCAGAAGCAGTTCTAC TTGTCAACCCTATTGAACCAGAACTAAAAGGAGAGGTATATTTACATTAAAAGATCTTAAAGTGTCCCAAGGACATAGAT ATGCACTTTGACATATATGATCCTTATACACCCAAACAATATATACTCATCATTTTTCTCTGTTTTTACATGTCTCATTA TATTTCATATTCATTGCTTCACTGTCTTCTCTTATTCTCTCACTACGCTTGTCTACACCTATTGAATGTCTACACAACAT TTTAGGCACAATGATTGCAATTTTGATGTATAGGTGGATGACAAGTACCAATATTCATGTGATAACAAAGATAGCCAAGT TCATGGATGGATTTGCAAGGATCCGGGTGTCGGATTCTGGCTAATTACGCCTAGCAATGAGTTTCGATCTGGTGGACCCC TCAAACAAAACTTAACTTCCCACGTTGGACCTACCACGCTTGCTGTAAGTGCTTAATTAATCATGTGCATGGAAGAAATG TAATCAAATTGTTAAGTATGGTGCTATAACTTGGATCTGATTTTAGAATGTTGTTGGTCTAAAATAACACAATCAGGTGT TTCTAAGCGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCA GTTTTTATCTATTTAAATTCTACTGATGATGGAAGTGCCGTCCCTAATCTATGGGACGATGCTAAACTGCAGGTTCAATA TTACTTACTTTATCAATCTACATATAATATAAAGCTAGATTTTCTAACACAAGAACATATATACCAATTAACTTATAGAT GTTGGTGGAAGTCCAAAGCTGGCCCTACAGTTTTCCTGATTCAGATGATTTCTCAAAGTGGGATGAACGTGGTAATGTTA GTGGCAGACTTTTGGTTAGAGACAGGTGAGTTCTTATAAGTTGTGTTTTTAAGAGTAATCATAGCCCCTGAAAAATTTCT TATATATTTGTCTAAATCCCTTAGATTTGTTTTTGGTCATCAAATTTTGGAAATTAAGAATGAGAACCTCCTAAACTTGC TTGTCAAATTAACTGAATCAATTCTGCACTTGAGAAGTTAATCCCTGAATCAAATATATAATAGTTTGTTTTCTAACAAT TCCATTTTGGCATATAAAATATATAGGTATATAGACGATGACTACATATCAGCGAAAGGTGCCTACGTTGGCTTGGCTCC ACCTGGAGAAGTGGGATCTTGGCAAAGAGAATGCAAGGTAACTTGAAAAAAAGGAAAAACATGGTCTAGTCTTCAGTGTA CATGTTCTTGTTAGTGTGCTCATTTCACTATGATGCACAATATTCCTTTTAATGATGCATATTGCATAATATGTTCTTAT TAGATTTTATTTGTGATCAGAATTACCAGTTTTGGGCTAAAGCAGATGATGATGGCTATTTCACCATCAGCAATATTCGT GTTGGCGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTGACTATGACCATAACAGA AGGTATTCATCAACCAGTTTTATCACTTTTATTTTTGAAGCTACAGAAAGTTTTTGTGCTAAGTATTTTGTATTTGGTTT CTATGAAAACAGTTTGTGACATAGACATTGGGGATCTTGTATATGAGCCACCAAGAGATGGTCCCACATTGTGGGAAATA GGCATCCCTGATCGCTCTGCTGCCGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCA TCCTGACAAGTTAGTCACCTCTTTGGCTAATTGGCTTTACATTTCAACTTAAACTTTCATATTATTAAGCATTTAGTGTA TGTTTGAAACTTCTTCTACAATTGATTCTGAAGCCAAATTTTATATGATAAGAAAATTTTCAAAATCCAAAGATTGACTT CATTGGACCACATTAATTTCCCATGTAAATGCATTTTAAATTAACCAAGACTATATATATTGTAATAGTTGATTATAATT TGCAGGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACTGTTGGTGT TAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGTAGAGAGCCAGTAGTTTCATCACTGGTTTCACATTAC AAACTTGTTATATTTGCAGCAAGGTGAAACAAAAAATTGTTGACTTTTCCTCTCCATTTTAGGAAGAAAGATGACAATAC TTATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAGCAGTATTTATAAACTTCGAGTGGCTT TGGCATCAGCCACATTTTCTGAACTTCAGGTACATCAATTTTCTTACTTGATTATATGAATTGAGTTGATGGTAATACTA GTTAAGTTCAAGGTTGTTCATAAATACTCTGTTTACAATTTTAAGGTTCGAGTTAATGATCCAAAAGCAAATCGTCCTCT ATTTTCAAGTGGATTGATTGGAAGGGATAACTCAATCGCTAGACATGGAATTCATGGCCTTTATTGGCTTTACAATGTGG ACATACCAGGCACTCGACTTGTAGAAGGAGATAACACCATCTTCTTGACACAGACAAGAGGCAATGGCCCATTTCAAGCT ATTATGTATGATTATATTCGTTTGGAAGGTCCATCTGAGTCTAGTTTCAATAAGAAAAATTAAGAGAGCTTTTAGAAGGT CCATCTATAGTCTAGCAATTCCTTACATTGTGTCTGACTATGTAAAGAAATTTTGCTACTTGTTCTTCAATTATTGCTCA TTGTGTATGCGAAGTCTACCTTGAAGTTCTTTAAGCTTTGTCTTTAGTTCGATCACTGGACTCATGTATGGATAAAACAT TATTAAGAGGGTTGTTGTCACTTTGACATCTGAGTGTATGGTGAAATCTCTGAGGTGGGAGGACATTGAGAAAAAAATGT TACATAAATTTTTA
CDS sequence (LotjaGi1g1v0415600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCTCTTGGGGTGCAACTCAGTATTCAAGATCGTCATGTGGTGATGGACAATGGCATACTACAAGTCACATTGTC CAATCCTGAGGGAATTGTGACTGGAATTCAGTACAATAGCATTGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACA GAGGATATTGGGACCTTGTTTGGAGCTCACCAACCAGTACAGGAACCACCGGTAGATTTGATGTGATAAAGGGAACCACT TTCAAAGTTATAGTGGAAAATGAGGACCAAGTTGAGGTATCCTTCACTAGGATGTGGGATGCTTCCCTTGAGGGCAAGTT GGTTCCTTTGAATATTGATAAGAGGTTCATAATGCTTCGTGGTTGTTCTGGCTTCTACTCGTATGCAATTTATGAGCACT TGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATAGCTTTCAAGCTTAGAAAAGAGAAGTTCCATTATATGGCA ATGGCAGATAATAGACAAAGAGACATGCCTCTTCCAGATGACAGAGTACCACCTAAAGGCCAACCACTTGCATATCCAGA AGCAGTTCTACTTGTCAACCCTATTGAACCAGAACTAAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGATAACA AAGATAGCCAAGTTCATGGATGGATTTGCAAGGATCCGGGTGTCGGATTCTGGCTAATTACGCCTAGCAATGAGTTTCGA TCTGGTGGACCCCTCAAACAAAACTTAACTTCCCACGTTGGACCTACCACGCTTGCTGTGTTTCTAAGCGCTCATTATAG CGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTTATCTATTTAAATT CTACTGATGATGGAAGTGCCGTCCCTAATCTATGGGACGATGCTAAACTGCAGATGTTGGTGGAAGTCCAAAGCTGGCCC TACAGTTTTCCTGATTCAGATGATTTCTCAAAGTGGGATGAACGTGGTAATGTTAGTGGCAGACTTTTGGTTAGAGACAG GTATATAGACGATGACTACATATCAGCGAAAGGTGCCTACGTTGGCTTGGCTCCACCTGGAGAAGTGGGATCTTGGCAAA GAGAATGCAAGAATTACCAGTTTTGGGCTAAAGCAGATGATGATGGCTATTTCACCATCAGCAATATTCGTGTTGGCGAC TATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTGACTATGACCATAACAGAAGTTTGTGA CATAGACATTGGGGATCTTGTATATGAGCCACCAAGAGATGGTCCCACATTGTGGGAAATAGGCATCCCTGATCGCTCTG CTGCCGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAA TATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACTGTTGGTGTTAGTGACTACACCAA AGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAATACTTATCAAGGAACCACATGGCAAATCAAGTTTAAGC TTGATAATGTGAACAAAAGCAGTATTTATAAACTTCGAGTGGCTTTGGCATCAGCCACATTTTCTGAACTTCAGGTTCGA GTTAATGATCCAAAAGCAAATCGTCCTCTATTTTCAAGTGGATTGATTGGAAGGGATAACTCAATCGCTAGACATGGAAT TCATGGCCTTTATTGGCTTTACAATGTGGACATACCAGGCACTCGACTTGTAGAAGGAGATAACACCATCTTCTTGACAC AGACAAGAGGCAATGGCCCATTTCAAGCTATTATGTATGATTATATTCGTTTGGAAGGTCCATCTGAGTCTAGTTTCAAT AAGAAAAATTAA
Protein sequence (LotjaGi1g1v0415600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPLGVQLSIQDRHVVMDNGILQVTLSNPEGIVTGIQYNSIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGRFDVIKGTT FKVIVENEDQVEVSFTRMWDASLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKEKFHYMA MADNRQRDMPLPDDRVPPKGQPLAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICKDPGVGFWLITPSNEFR SGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSTDDGSAVPNLWDDAKLQMLVEVQSWP YSFPDSDDFSKWDERGNVSGRLLVRDRYIDDDYISAKGAYVGLAPPGEVGSWQRECKNYQFWAKADDDGYFTISNIRVGD YNVYAWVPGFIGDYKYDVTMTITEVCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQ YGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSIYKLRVALASATFSELQVR VNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTRLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEGPSESSFN KKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 635 | 634 | 0.0 | – | |
| PANTHER | 2 | 635 | 634 | 0.0 | – | |
| Pfam | 7 | 203 | 197 | 1.3E-94 | ||
| CDD | 8 | 297 | 290 | 6.88522E-80 | – | |
| SUPERFAMILY | 11 | 296 | 286 | 3.14E-7 | ||
| CDD | 334 | 433 | 100 | 1.47568E-32 | ||
| Pfam | 357 | 428 | 72 | 2.6E-25 | ||
| SUPERFAMILY | 377 | 430 | 54 | 3.33E-9 | ||
| SUPERFAMILY | 440 | 632 | 193 | 2.64E-53 | ||
| Pfam | 443 | 631 | 189 | 1.2E-56 | ||
| CDD | 445 | 632 | 188 | 1.89059E-58 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0415600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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