Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0419500.1

Overview

Field Value
Gene ID LotjaGi1g1v0419500
Transcript ID LotjaGi1g1v0419500.1
Lotus japonicus genome version Gifu v1.2
Description DNA-3-methyladenine glycosylase 1; TAIR: AT1G19480.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1; TrEMBL-Plants: tr|I1JTA6|I1JTA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0419500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91316076..91321391) extracted from Lotus japonicus Gifu genome v1.2.

TGAGACTTATGTTAACTAGAAATATGACAAGAAAAAAAATCTTATAAACACCATAGAGATTCCACCCTAGCGAGAGACAT TAAGTAGCTACGTCGTCTCATGTTAACCGCGTGAGTGTTTATCTAAACATCTTTGTCCATTGTAATTTGTCCACCAAATC CAAATTCAGAAGAAAAACACCAAGCAGTATTGGGCTTTTGAGGGCTTGGGCCGATAATGCAGAAATTCACGTGCAGCACG CAGTTCAAGGTGGCGTGGTGAGATGAAGAAAACAGACACCTACCTACACCACACCACACCACACCACACCACACCACACC ACTCGAAAAATCGACCAAGACGCAGACGAAAACACCGGAAGTTTTGAGGACGAAGAAGACCCAGTGAGTTCAATTCATTC AATCGATTGCATTTGCATTCCACATTCACATTCACCTTCATCAATTCAAATTTCAATTCAATTCAATTCAATCTCTCACA CATGGGCGAACCCCAATCCCTAACCCCAACCCAGATTGAACCTCACCCTCAGCCCCAATTACCTCCCTCCTCCGCCCCAC CATCCACCGTCGCCGCCGCCATCATTACCCCAGACCCCGAACTCACCAATGTCCCCCCGCCAAACCATGCCCCGGCAACC AAAATCCCCCTCCGCCCTCGCAAGATCCGGAAGCTCTCTCCTGAAACGACGACCACCACCACCACCACCTCCGAATCCCA ATCAGAAACCCCAAAACCCACCGCCACCGGCAAGTCAGCCACCGGGCGCAACAACAACAAGGCGGCTCAACAGCAGCAGC GAACCCTAGCGGCACCCAGAGTGATTGCCAGGCCACTTTCCTGCGAAGGCGAGGTGGAGATCGCACTGCGCTATCTCCGC AACGCAGACCCTCTCCTCTCCCCTCTCATCGACATTCATCAGCCTCCTACCTTCGACAGCTTCAACACCCCATTCCTGGC GCTAACGCGCAGCATCTTGTACCAGCAGCTGGCGTATAAAGCCGGTACCTCGATATATACCCGATTCATCGCCTTATGTG GTGGGGAAGCCGGTGTTGTTCCGGAAACTGTGCTTGCGTTAACTCCTCCGCAGCTTCGCCAGATTGGGGTTTCGGGGCGG AAGGCGAGTTATCTTCATGATTTGGCTAGGAAATACCAGAATGGGATACTCTCTGATTCTGCAATTGTAAATATGGATGA TAAGTCGCTTTTTACTATGCTCACCATGGTTAATGGAATTGGGTCTTGGTCTGTTCACATGTTCATGATATTCTCACTGC ATAGACCTGATGTTCTTCCCATCAATGATCTCGGTGTTCGCAAAGGGGTTCAGTTTCTTTATGGTCTTGAAGACTTGCCT CGGCCCTCTCAGATGGACCAGTTGTGTGAGAAGTGGAGGCCTTATCGCTCGGTTGCTTCCTGGTATATGTGGAGATTTGT TGAAGCAAAGGGAACTCCTTCAAGTGCCGTGGCAGTGGCTACCGGTGCTAGCTTGCAACACCACCAGCAGGAGCAGCAAC AACAACAGCAGCAGCAGCAGCACCCTCCACAGCCACAGCTTCTGGATCCCATTAACAGCATGTTTAATCTCGGGTAAGAC TTTGGTTTATTGCATTGCCTCCCCTTACACTCCTTATATTTTATTTTAGGTTTATTGAATATCTGCTTATTTGGAATTAA ATGCTTTTGTCCATATATCATTTGGAGTGATCATTTACCTTGCAACTCTTTAACTTTTTTCTTACTTCAATTTAAGTTGT AATGGATTGTTTTGAAAATGTATGAAAGGCTTGCTTCCTCAAAATTGCATCTGTTGCTTCGAATGGCTATGGTAGTAATC AAATATTTCCCAATGGCTTACGAGCCTTCAGGTGCTTGGCTTTGTTTTAGATACGTTAGGCACTATATATATATATATAT ATATTGTGGAGGAGCTTTATTGGAAATGAAGCTAGCATAGTCCTCGTGAATTTTCACTCCTTCTAGATGCGTTTCTTTTG ATTTATTTAGGAAAATTTCACTTCTGTTATCTTTACTACACCTCTTGTTGTGTAGTTTTCTGATCAAAATATGCACTATC TTCTTATTAAGGAATGCTGTATTCTTTCTTTTCCTTGATTAGGTAAGCCTTCGTACCTCATGGTTGCATATCATGGTTTT CATGTTTTATCATTGTTGAAATTTACATTGAGTCAGCATAATGCTAGAGTTTAACCCTGTAAAAAAATTGGTTGCTCATT TTCTCTTCCTGTTGAAGAAGGAACACCTTAAGTGTTTTCATTCGTCCTTTGGCTAAAAGAGTCTCTATTTGTTCTTTGTG GTTGGTGAAGATTATTGTCACAAAACTTCGTTGGAGTTGCCTTTGGCTGATGGTCATTTCATTTAAGGCGTTCATTTGTT TAATACAAGGAAACTTTAAAAGATAAACAAAGTGATGCGCAATACCTGATAGCAGGGTGTCTTGTGGAAGAAATTTAGTG CCTTTTGTGCCTTAATGTTAATCACAACAAGATATATCAGATGTGATTATAATCGATACTTTTTTTTTTCTTGTTACCTT TTTTTTGTGAATGCAGTTTCATGTGTCTGTTAATCTTGTGATCAAATAGCGATGACAAAACCAGAAATAATTTAACATTC CCTTTGAAATGAGTGGAAACTTGAAAGAACCTGGGACATTGCTTGATCTCTATGGAATATAGAGTGTATTATGAGGTGAA AAGCACTTCCTGGCATTCCCTTGCACTATTATTATGTGGACTAAAAGAAGTGAGGAAGCCTATAGTCATGTAGAAAAGCA TGCCATAACATGTAAGATAGGAAGTGACAAAACTATTTAACAAAGAATCACAAGGAAATGGATGTTTTGATGTTTAAAAA TAGAACTAGAACTACAAAGACTAGAATTGATGATACTATAAGTAAAATTTGATTACTTAAATATGTAGTAGTGAATGCAT AGCTAGTGATTTTTGGGATTGGAAGAAGTGCTACAGGTCACAGGAGTCAGATTATCTTCTCATTGAAGAAAATTTGTTGA GAGGAACTCATTGTTGCGCCATTATACACATTTACATGATGGATATGTATATTTAACATGATCATCCTAGGACGCTTTAG ACAGAAATGTACATTACGATTGCATGATTTGCACGGATATGAGGATTTATTTAACATTTAAGTTTACATTCTAACATTAA TTTTTTAGGCTTCAAGTTGAAAAGGCTAGGCTAGTTTGGTATTAAGGCTATCTTATGTTATAAATTATACTGTACAGCGG CTTAAGTTTTTCCTTAAATGTTCCTTGGGTGATTATAACTGTCAAGAGGAACAAAGAGGTCATATTTTGGAATCTCATAT GTAGTTTGCTTTCCTGTGTCCTTGTGGCCTTTTTAGTAGTTGATGTTTTTTTGCTGTGGTATGTTTCACTATTACCATTA ATTAATATGATTTGATCATTGAACCTTCATGGTGGGTATGTTTTTTAGGTTTTACATCAGTTCTTACCATGTTTTGGAAT TTTGCTTCTTATGCCCCTTCGTAGTATTATTTTGGTGTCTTTAATTGGATTAATCTTGTGTCTATTTAGTTGAGAGAAGC TTCTCTAATGTGGTCCATCATCTGAATATAAATCTTAAAACCTATATTAGACAATCTTTTGTCGGTAAAAGTTGTCTTTG GAATCCTTGTCATAACATTATGTAAATGAGATGAAGTTTTTTCTTTCACCGGTTGTTTTGATAATCTCTCCTATGTAGAC TTATATATAATTTCTAGATTATACTTAGATATGTTCTGTTTTGTCCGTTTGTTTTGAGTTGTATTTGAAGTCTGTTCATG CTGTATCCACTCTAATATCCAATGCACTTGATTGTGCTTTGATCGTGCCAGCTGCCAAATATTTCCTTATAATTTTTTTC ATGTATGTTATATAACTAAATGCCAAGTTTAGTTACTTGAAGGATAGGTTTGTGAATTTCAAGGTATAGAATACATGTCT TTCATTTGTGCTTCCTTCCTTTTTTTACTCATCTTCTTCGAGGTTTGTAGTTATTTATATTGTGTAACCTAGTATTGTAA CTATCATGCACGTCTCATTTTTCTGTCATTCACTACAGGGCCACCTGTGCTTGGGGACAATGATTACTCGTGAAATTGTG AAGTTTGTACTGAAACTTGGACATTGCATTGAAGGGTTAGTCTATGATTGCCATGTGTTCAATAAATCCTGTGCAAGATT AATAAAGACCAGTCCTTAATGACCAGTCCTTAATTTTGTTTTGTTGATCAGTAATTGTAGTGGTTGGAGGCCGAATTCAA GTTGTCAAGCTGTCTTTTTGTTAGATATAAGAGAGAAGTATTTCACTACCTTTGCCACTTGGTAATGTCACAATGGTTTG AACTTTGGACATTGTAACTATTATGAGTCCTTATTTAACGAACTCCTTGTGGATGGGCCCTTTGTGAATTCTTATATCGT CAACATAAGATTTCAGTAATTCTTATCCTCATTGATCTATCATTCATTTATGGGTTTTGATGAAGAATGCATGGTATGCA GTATGCTACACTTGTAAACAATCTGATCCATTCATAGTCACTAACTCATATGTTTAGCCTCACATCATCAATACGTGTAA TTGATGATTGACTCATTCCCAACATATAATAGTCCTTAAAACTTAACGTCGTTTTCAAATCATATATAGTTATGTGCAGA AGTTTTTCTTACCACAATTGCATATATTAAGAATCAATGGAGGAAGGGTGATGGAGTATAGTAAACTCAGACATCAACTA ACTGACAGTTTTTGCCATTGTGGCTCAAGGTCACTAGGATATTCTCATGGAATGTCCGTTTATTCCTTTCTATTGTCATT GTAATCTTCACTTTGTGTTTGGATCTGACACTACATGCAACTACATACATCCTAAATAATCTAACTATAATAGGGTAACT GATGTAGTGTTTTGGATCACACACTAGATTTTGCAAGTAAAATGAAAATGCAGCTCGAGTACGAGAATTATGATCCTTCA TTCCCTGACCAACCTGTGGTTGACTTATACCTCCCTATGTGGGCCAAATTACCAGCCTTCAAAACTAAACCAGCCTTCAT ATGGGTTGAAGAGATGAACACAACCACCACCACCTCCTCTCCCCTGTTTCTCACATATCAACAACTCAATGCCTCAGTCA ATGCCATCTCCTCTCACCTCCTTATTCCACTGCAAAGAGGTGACACTGTCTTGCTTCTTTGTTCTCCAGGGCTTGACCTA GTTGAACTCATATTTGGTTGTCAAAGAGCTGGTCTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0419500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCGAACCCCAATCCCTAACCCCAACCCAGATTGAACCTCACCCTCAGCCCCAATTACCTCCCTCCTCCGCCCCACC ATCCACCGTCGCCGCCGCCATCATTACCCCAGACCCCGAACTCACCAATGTCCCCCCGCCAAACCATGCCCCGGCAACCA AAATCCCCCTCCGCCCTCGCAAGATCCGGAAGCTCTCTCCTGAAACGACGACCACCACCACCACCACCTCCGAATCCCAA TCAGAAACCCCAAAACCCACCGCCACCGGCAAGTCAGCCACCGGGCGCAACAACAACAAGGCGGCTCAACAGCAGCAGCG AACCCTAGCGGCACCCAGAGTGATTGCCAGGCCACTTTCCTGCGAAGGCGAGGTGGAGATCGCACTGCGCTATCTCCGCA ACGCAGACCCTCTCCTCTCCCCTCTCATCGACATTCATCAGCCTCCTACCTTCGACAGCTTCAACACCCCATTCCTGGCG CTAACGCGCAGCATCTTGTACCAGCAGCTGGCGTATAAAGCCGGTACCTCGATATATACCCGATTCATCGCCTTATGTGG TGGGGAAGCCGGTGTTGTTCCGGAAACTGTGCTTGCGTTAACTCCTCCGCAGCTTCGCCAGATTGGGGTTTCGGGGCGGA AGGCGAGTTATCTTCATGATTTGGCTAGGAAATACCAGAATGGGATACTCTCTGATTCTGCAATTGTAAATATGGATGAT AAGTCGCTTTTTACTATGCTCACCATGGTTAATGGAATTGGGTCTTGGTCTGTTCACATGTTCATGATATTCTCACTGCA TAGACCTGATGTTCTTCCCATCAATGATCTCGGTGTTCGCAAAGGGGTTCAGTTTCTTTATGGTCTTGAAGACTTGCCTC GGCCCTCTCAGATGGACCAGTTGTGTGAGAAGTGGAGGCCTTATCGCTCGGTTGCTTCCTGGTATATGTGGAGATTTGTT GAAGCAAAGGGAACTCCTTCAAGTGCCGTGGCAGTGGCTACCGGTGCTAGCTTGCAACACCACCAGCAGGAGCAGCAACA ACAACAGCAGCAGCAGCAGCACCCTCCACAGCCACAGCTTCTGGATCCCATTAACAGCATGTTTAATCTCGGGGCCACCT GTGCTTGGGGACAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0419500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEPQSLTPTQIEPHPQPQLPPSSAPPSTVAAAIITPDPELTNVPPPNHAPATKIPLRPRKIRKLSPETTTTTTTTSESQ SETPKPTATGKSATGRNNNKAAQQQQRTLAAPRVIARPLSCEGEVEIALRYLRNADPLLSPLIDIHQPPTFDSFNTPFLA LTRSILYQQLAYKAGTSIYTRFIALCGGEAGVVPETVLALTPPQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDD KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQFLYGLEDLPRPSQMDQLCEKWRPYRSVASWYMWRFV EAKGTPSSAVAVATGASLQHHQQEQQQQQQQQQHPPQPQLLDPINSMFNLGATCAWGQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 110 110 - –
PANTHER
PTHR43003
40 345 306 4.0E-151 –
PANTHER
PTHR43003:SF7
40 345 306 4.0E-151 –
MobiDBLite
mobidb-lite
66 110 45 - –
Gene3D
G3DSA:1.10.1670.40
130 318 189 2.9E-64 –
SUPERFAMILY
SSF48150
148 319 172 2.62E-37
IPR011257
Gene3D
G3DSA:1.10.340.30
156 268 113 2.9E-64 –
CDD
cd00056
158 319 162 1.91101E-29
IPR003265
Pfam
PF00730
163 306 144 1.1E-18
IPR003265
SMART
SM00478
166 321 156 3.6E-10
IPR003265
MobiDBLite
mobidb-lite
335 362 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0006284
Biological process Base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0419500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…