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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424500 |
| Transcript ID | LotjaGi1g1v0424500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase subunit a; TAIR: AT2G21410.1 vacuolar proton ATPase A2; Swiss-Prot: sp|Q9SJT7|VHAA2_ARATH V-type proton ATPase subunit a2; TrEMBL-Plants: tr|I1K7M8|I1K7M8_SOYBN V-type proton ATPase subunit a; Found in the gene: LotjaGi1g1v0424500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91898515..91900650) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTGGTGACTGGGGGCATGGTATATGCTTATTACTGGCATCTTTGTATTTCATAATCAAAGAAAAGAAGTTTTCTTC TCAGGTATTTAACTCATGTATATTTGCTGAGTGTTCTCTCATTTTTAATGTAAGCACCAGTTTTGTTTGATATTGTTAAT GGCAGAAACTTGGAGACATATTAGAAATGGCTTTTGGGGGACGCTATATTATTATGTTGATGGCACTATTCTCAATCTAC ACCGGCTTGATATATAATGAATTCTTCTCAATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGCCGTGAGTCTTC ATGCAGGTGGTTACCAATTCAATTTATTCAACAAACTACTTTTTATATATGCTAATTGAGTGATTGGTCACAATATTATT TGTAAGTTTAGTGTATTATTACTTTTATAGGGATGCTTCTACAACAGGTTTAATGAAAGTGCGGGGCACTTACCCATTTG GTGTGGATCCTAAATGGCATGGTACTCGAAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTCTACTG GGAGTATCTCAGATGAATCTTGGAATCATGTTGAGTTACTATAATGGAAAATACTTTGGAAACGACATAGATGTCTGGTA ATAGAGAAAATATAGTTTTAGTTGAATGTGGTCTGTTGTTTATCTGTGTCCCGTTTGATTTTTTGATGTTGCTTCAGGTA CCAGTTTGTTCCCCAGATGATATTCTTAAACAGCCTATTCGGCTACCTTTCACTCCTCATAATTGTAAAATGGTGGACTG GATCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAGCTGATGATTTGGGTGAAAACCAGCTCTTT GTTGGACAAAGGTTCCTTCAAGTAAGAAATTTCAAATCTCATTTATTTTTTTGTTAGTTATATTGAACATGAACAGATGT CAAATATGAACTGTCTACTATTTCATTGCTGTTAGATTGTGCTGCTACTGTTGGCACTCGTCGCTGTACCTTGGATGCTA TTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCTAGAAGTATACTCTAAACTATTATTTATCTTGTTTTTTGTTTTTAT TTGTTCTTATTGAACCCCGTTTTAATTTTTTACCTTGCTTCATCAGAGGCATCAAGGTGAATCTTACTCTTTGCTCTATG CTGGGGATGAACCTCTTGAATCAGAGTCAAATAGTACTCCCCGCGATCATGAGGAGTTTGATTTCAGCGAGGTTTTAGTG CACCAACTGATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACGGCTTCATACCTACGTTTATGGGCCCTCAG GTAGGTAGTTGAAAGCGTTTGTTGCTGTTCTGTGAACTAACTTTGGTTAGAAACTTACAATGAATTAAAGTTCAACATAG ATGTGTGCACGCTATCCCTTCAAGCAAGGTAATTGGAATGCAATTTAGGCTTTGATAAATTGCAATTCATGGATGGCAAG AACTATGAATCAGTAAAGGTCCAATGGATTTTTGGAATCCAGTTTAGTCCTTAGGAATGAAAGAAACCTCACACAAAATG CATACGTACTTTGAAGGAAAATATTGGAAAATTAGTCACTTAGAAGTGTTGCAAGAAACCTTTATCTTATTATTGTACAG ACTTCAGCGATCTCATTAAATGTGTACATCTCCAAATGCATCATAACCTACAATTTAAATTTTTCTTTGGTTTTTGGTCT TGTTCAGTCTAGCTCATTCAGAGTTATCAAGCGTTTTCTATGACAAAGTTCTACTTCTAGCATTGGGGTAAGTTCTTTTA GCTTTGTTATGTAATAACTGGTGGGCATGAAGAAGGTTACCTGGTGCATTAAAACCCTTATATATTGATGTTTGTTTAAC TCATGCAGGTATAGCAACATCATTGTTCTCATTGTTGGCATTATTGTTTACATATGTGCTACTGTTGGTGTGTTACTGGT AATGGAAAGTCTGAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTTGAGTTTCAGAACAAATTTTATCAGGGAGATG GTTACAAGTTCTTTCCATTTTCATTTACATCACTTAATAATGAGGATGAACTGTAG
CDS sequence (LotjaGi1g1v0424500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTATTACTGGCATCTTTGTATTTCATAATCAAAGAAAAGAAGTTTTCTTCTCAGAAACTTGGAGACATATTAGAAA TGGCTTTTGGGGGACGCTATATTATTATGTTGATGGCACTATTCTCAATCTACACCGGGATGCTTCTACAACAGGTTTAA TGAAAGTGCGGGGCACTTACCCATTTGGTGTGGATCCTAAATGGCATGGTACTCGAAGTGAACTTCCATTTCTTAACTCT TTGAAAATGAAGATGTCAATTCTACTGGGAGTATCTCAGATGAATCTTGGAATCATGTTGAGTTACTATAATGGAAAATA CTTTGGAAACGACATAGATGTCTGGTACCAGTTTGTTCCCCAGATGATATTCTTAAACAGCCTATTCGGCTACCTTTCAC TCCTCATAATTGTAAAATGGTGGACTGGATCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAGCT GATGATTTGGGTGAAAACCAGCTCTTTGTTGGACAAAGGTTCCTTCAAATTGTGCTGCTACTGTTGGCACTCGTCGCTGT ACCTTGGATGCTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCTAGAAAGGCATCAAGGTGAATCTTACTCTTTGC TCTATGCTGGGGATGAACCTCTTGAATCAGAGTCAAATAGTACTCCCCGCGATCATGAGGAGTTTGATTTCAGCGAGGTT TTAGTGCACCAACTGATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACGGCTTCTCTAGCTCATTCAGAGTT ATCAAGCGTTTTCTATGACAAAGTTCTACTTCTAGCATTGGGGTATAGCAACATCATTGTTCTCATTGTTGGCATTATTG TTTACATATGTGCTACTGTTGGTGTGTTACTGGTAATGGAAAGTCTGAGTGCTTTCTTGCATGCTTTGAGACTTCACTGG GTTGAGTTTCAGAACAAATTTTATCAGGGAGATGGTTACAAGTTCTTTCCATTTTCATTTACATCACTTAATAATGAGGA TGAACTGTAG
Protein sequence (LotjaGi1g1v0424500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLITGIFVFHNQRKEVFFSETWRHIRNGFWGTLYYYVDGTILNLHRDASTTGLMKVRGTYPFGVDPKWHGTRSELPFLNS LKMKMSILLGVSQMNLGIMLSYYNGKYFGNDIDVWYQFVPQMIFLNSLFGYLSLLIIVKWWTGSQADLYHVMIYMFLSPA DDLGENQLFVGQRFLQIVLLLLALVAVPWMLLPKPFLLKKQHLERHQGESYSLLYAGDEPLESESNSTPRDHEEFDFSEV LVHQLIHTIEFVLGAVSNTASLAHSELSSVFYDKVLLLALGYSNIIVLIVGIIVYICATVGVLLVMESLSAFLHALRLHW VEFQNKFYQGDGYKFFPFSFTSLNNEDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| PANTHER | 46 | 348 | 303 | 9.8E-160 | ||
| PANTHER | 46 | 348 | 303 | 9.8E-160 | – | |
| Pfam | 47 | 340 | 294 | 4.4E-109 | ||
| Phobius | 85 | 103 | 19 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 123 | 142 | 20 | - | – | |
| Phobius | 143 | 173 | 31 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 174 | 192 | 19 | - | – | |
| Phobius | 193 | 284 | 92 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| Phobius | 285 | 306 | 22 | - | – | |
| Phobius | 307 | 349 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0424500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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