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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424900 |
| Transcript ID | LotjaGi1g1v0424900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Forkhead-associated (FHA) domain protein; TAIR: AT3G54350.1 Forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1; TrEMBL-Plants: tr|K7KHS6|K7KHS6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0424900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91958049..91963542) extracted from Lotus japonicus Gifu genome v1.2.
ATTACACAGAAATTGCTCTTTTGTTATATCAAAATCAAATCCTAATTGATTCAATTGAAAATTGTAGCAGAAGAAAAAAA AGGGAAAAAAGAAAAAGCCGTTGCATTAGTGGGGTTTTGCGTTGCGGCGTATAAGGAAAACGGCTTAAAACCCTGAACGG AGGAGAAGAAGGAGGAGGACCAACCACTCATTCATTCACAACACAGACGCTGTGTTCTCGCCGGAGACACCGTCAGTCAC TGTTTTCGCCATGGGAGCTCTTCCCACCGTTTTCCCGTGGACTCGTGAGGACGATTTTCTCCTCAAAAACGCCGTTGAGG TTCTTTCTGATTTCTGCTTTGAGTTTCTTTCTCTTCTGCTGCTATGCGTTTTTTCTTCTTTCTCTTTTGCTTATAGCTTC AACACTGATATGAATTACACACAAATTATAGTGTCAATCATTGGTGAAATTTGCAAGTCATTGATGTAGTGAGGCCCATA GTTGTATTTTTGTTTGTTAATTTGAATGTTAATGTTTATGTCTGATTAGGGGCATGCACTTTGAGCTAACATGAATCTGA TATTCTTTTTATGTTTTCTCGCTTTAATTTTAGAGACAAACATTATAGGATTTATGTTTAGAAGATTAATCTTGAGTTTT TCATTTGCAGTCTGGTGCTTCCTTGGAATCACTGGCGAAAGGCGCAGTGAAGTTTTCTCGAAGATATAGTATTAAAGAAA TACAAGATAGATGGTATTCTATCCTCTATGATCCTGTTGTATCTGCGGAATCTGCTGCAACCATGGCAGACTTTGAGACT CGTGCGACGCCTCTCCCGTCAAGGTTTTTTAATTTTGGGCATTCGAAAGGACGTAAATCTGTTTCTGTAAGGAGTAAATG TAAAAGTGTCCGTTCTTCTTATTATGCCATGCGGAAGAGGTTACGCAAGGACTCGGCAACTTCCATGGACTTCAATTTTC TAGTTGATCCGGAAAATGGCGATTACGGGCTGAACGGAAGCGAGCCTTTGCCTGAAAATAGCATACCCGATGGTGCAACT TCGAATCACTTTTCAGATCTTGATCCGGCGCAATGCGTTTTTCCTGAAAATATGATTGATGGTAATGATGCAATTGATGG AGATACTGATCGTGTGGTTTACCCTGGAGCTGACCATGCAGTTGAAGACAATCTTCCCATTGAGCAAAATAGTATACTTG AGGAAGGATTGCAAATTCGTGGTGATGATGTGTCTTTGAATGGAGCTGCTGAGGAATTGGGGGTTCCAGAAAATATGGAT GTAGATAACTTGATTGGAGATGATAATATGCGTTTATCTGCATTGGATCATGTCGACAATGATCATGAAAATTTGTGTTC TGCGTTTTATGAAAATAATCTGTTTGATTCACCTGAGTTAGAGTGTGGGACATCATTTAACGCCTTACCATTATCTCCGC TGCCTGAAGTGCCTGAAATGACTGAATTATGGAGAACAGATGAGAACATTCCAGTAGTTAATTTTCAGTATGATGGTGGT TTAAAAGATTCTGTTGCTTGCGGTCTGGCTGACCTGTCTAATGAACTGGAATTTGATGATGATGAACTGTTTTTGATGAA TGGTGATAGAAAAGATGGGATTGATAAGGCTTACTATGATGATTTAAGTTTGCTCTTGCGATATCCTCCAATGGATGTTA GTCCAGATCAGGTACCTGAAAAGGCTGAAACAGAGTTGTTATTGGACTCACATGCCCATGTTGCAGATCTTTCAGTTCCA TGCCATGCAAAAGTAGATGATAACTCGGAGTCGCAATGCAGTAGTGTGCAAGTAGTTCACAAAATAGAGTTCCAAATGCC ACCTTCTGCCTCAGCTAAAGATCCTCATTTTCCTGAACTAGTTAACGGAGTTATTAACTGTGTACTGAATACTGAGGACC CAGAAGTTCCATCCAATGATGACGTTTTCCTACCCTTTGATGTGCCTCAGTCAACATTTTCTCATTCACATAAATCAAAA TCTAGAGAATTCAGTAAATCAATTCCGTCAACTTCTCATGATTATGGATTTAGTAATCATAGAGCTAGTGAAAGAGGTAA AACTTTGATGCAGGTTGAACAAAAAAACTCCAGACAGCCTTCTCAGATGATGGGATCTCAACTCCCAGGGCCTGTTTGTG GTTCTAAGGTAAAATGTGAGTTGCCCTATGGTCATGCATCACACACAGTGTCTAGGAGTGCAGTTATTGTTTCTGGTGGC TTAGTTGGAAACAATAATGCTGCAAACACAACCAATGCTCCTCTGCATGAAAATACAAAGGAAGAGCCTACCAAGGTTGG CTTGGCAAAGCATCTGAGCAATTGTGCGACAAATTCTTTGATTGAGAAACCAGGCGTTGGTTCTAATGACTTGAGGAACC ATCCTAAACCTAATGGTTCTAGCATACAACAGGAACAAGATGTAGCCTTGTCACTTGAAAATCATCAATTGCAACATACT GAAATGGGATCCTCAGATGTTCCTGAGGAGGACGAGGATTCTATAGAAAGTGATGATGATGTTCCTTATTATTCTGATAT AGAGGCAATGGTAAGGCGTGTTGAATTGAACTTCCAGTCAACTGTTAACACTTTTTTCATGTCTGTTGCTATTTCCTGAC ATATTCATTCTTCACTTCTACAGGTACTTGATATGGACTTGGATCCTGATGATCAGGATTTGTATTATAATGAGGAAGGT ATTGCAGAGCTATGAATTTTAACAGCTGTTGCTTGCTTTGTGCCCACTTGTTTCTTTGTTTTTTTGCTCCGAGAGAAGGG ACACCTAACATGAATTAATGACCCAACTGAATAACATTTCTTTTTCTTGATGCTTTTCTGATACTTGCCTTATAGTATGG GAACACACTTCAGATACTTGGGCAGTTAATAGCCACTTTGGACTTATTCTCTTCCTTGTGGTTGCCCATATTTCTGCAAT TTCTGAATAAATATAAAATGAGATAGATCCTTTCTGGAGTGAGCTTTGGCTGTACTTTTGTTGCTAGAATTCATGTTATC ATACTTACCATGCAATTCTGCAAATCAATTGCATAGTATATTGAATTTGTGAAATATTTACGAAATATGTGTTAATGTTT GCCTTGATCAAGATATGTCCATGAAATATGATCACATTGTTTATGCTAAATAAATCTAAGAACTAAAGGTCATGAAATAT GCTCGCGTAAACCATTTAATTTTTCATTGTTACCTCTACTGTATGATAGCTTAACAATGTGTATTCTGATTATGATTTAG TATCAAGTTATCAGCATGAGGAAACTAAGCAAGCTATCGTAAGGCTGGAACAGGGTGCTGATTCTATTACGCAGAGGGCC ATTGCTTCACATGGAGCATTTGCTATTTTATATGGTCGCCGCTCAAAGCATTATATTAAGAAAGCCGAGGTATTTGGGCA TGTAAATTTACTTGATCTACTAGTCATCTGAGAATCTTTTCCATTGATTCTTTTTTTGAATATTTAAAGCATAATGAGGT CATGTTATTTTTTGTAATAACTTCACTACTGCTAAAATTATCTCACAGGCATATTACATACATAGTTACACATCTTTCTG GATGTTTTATTCAGATTGTTTTTCTGTCTTGACGTGACACAGCGATTGATTTGTAAATTTGAGTCATTTGTTCAAACAGT CTAGGAAATAATATTTGGACAGGCCTGTTAATTAATCAATTATAAACATGAATGTGCTAGGGAAAAGTGCCCTGCTGAAA TAGACTTTGTTATTTCCTAGCACATAGAAGCTAAAATAGTGAAGATTACTTGTGATGCGTGACAGAAAATCTGATTGAAA TTGTGGTCAAGATTAAATTTAAGACATTGGACGATGCTTTTAATGATGGCTCAATTCATCCTGCAGGTTTTACTTGGACG AGCAGCAGAAGGTGTTCCTGTGGACATTGACTTGAGCAGAGAAGGGAATGCCAATACAATATCTCGACGTCAGGTTTGTT ATATTTACTTCTTTACTAACTTTGACTTAAATGTTAATGTAGCAGCAACAAAGTTGTTGCATTTTGATAGTTTCTGATAA AGACATGCATGTTCTACTTTTAAATTTGGACAAAACTGTGTTTACATCAGAAAATTAGTTATACTACAAACATCTCTGTA TGCTTCATGAAATACTTTTCACGGTAAAGCACCTACATTCTTTCTCTTCAAAGAGAAAATCATACCCCATACTTGTCTTT TCCTCCAAATTTTAGCTTCAAAGAGAAAACCAATGCCTTATTAAGAGTCTAGTGGAGGAAGAATTGTGAATAGATGTTAT TTATTCTTGTGCATCAAGTGTCTATATATCCTCTAGTGCATTAGGGTTATTGATCTTACCACAGGATCAAACTGTCTCAT CTGGTGTGGATGCTGTAATCGACATTCTACTTAAAGTATTGTGAGGACATACTATAAATATAAATTCAAATAATAGTTCG GGTGGATTATTAATTTTTTCATGTGTAGTTTGTGACATAAATTGGAAGCGCAGATGGTTAGGTATTAATTATGTTTTTCC TTGCTAATCTGTAGGCAATTATAAAGATGGACAAAGATGGATCTTTCTACATTAAAAACTTGGGCAGGAGTTCAATCCTT GTAAATAACAAAGAAGTGCGCACTGGTCAGTGTCAAAGACTGCATTCCGATTATCTGATTGAGGTATGATACTATGAGCT CTTGTAGCTCCTTTCAAATTTGATTGATTGGCATGAGTAGCCTCAATGTGAATTTTCTTATTGGAACCGATTTTTTTTTT CCTGATAAAAAAATGGAGACTACAGTAGCTTGCGGCAAGAACAGAAAAATGCTGAAGATGAAAGATAAATTTGAAATTAT GCAAATATAGAATATAAAGCAGATATGGTTTATTTTGCAGTTGAAGAGCATGCCATTCATATTTGAGACAAATGAAAGTT GTGTGAAGCAGTTCCTGGAGCATATGACTGACAATGGAGTGTAATTGTAAATGGTAGCAAGAGGTCCACTAACACAGAAG GTGCTTCTTATTTCTTCTGCACTTTCTGATTTTTGCTAAGGAGTGACCCTGCTATTGCATGTCAATACTTTTATTGGTGG AATGGAAAACTTCTGCAGCTCTTCACTATTCTTCCCCATGTTCCTTTGCCTGTGAAGGTTGATGATTCTTCAACCCCAAA GTTCTGATATGGCAAATTCATCCCAACCCTGAGTGCTTCTTGTCACCGCCAATGCTGAATCTGAAACTTTATTGCTTATG CAAGTGCAAAGGACGCATACTACTGTTTGAACAGCATTTTCTTTCTTAAATCTTTGAGCAATTTTACCTTACATTATATT TAGAAGCATAAACAGCAATCTGTTAGTTGAAAATTACTGCTTTTGGATTCGAGAATCGGTTGAGTTCAATTTTGAAATAT TTCTATTGACTAATTTCAAAGATTGTTAAAATTGTGATACTATCTTCAATGCAC
CDS sequence (LotjaGi1g1v0424900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTCTTCCCACCGTTTTCCCGTGGACTCGTGAGGACGATTTTCTCCTCAAAAACGCCGTTGAGTCTGGTGCTTC CTTGGAATCACTGGCGAAAGGCGCAGTGAAGTTTTCTCGAAGATATAGTATTAAAGAAATACAAGATAGATGGTATTCTA TCCTCTATGATCCTGTTGTATCTGCGGAATCTGCTGCAACCATGGCAGACTTTGAGACTCGTGCGACGCCTCTCCCGTCA AGGTTTTTTAATTTTGGGCATTCGAAAGGACGTAAATCTGTTTCTGTAAGGAGTAAATGTAAAAGTGTCCGTTCTTCTTA TTATGCCATGCGGAAGAGGTTACGCAAGGACTCGGCAACTTCCATGGACTTCAATTTTCTAGTTGATCCGGAAAATGGCG ATTACGGGCTGAACGGAAGCGAGCCTTTGCCTGAAAATAGCATACCCGATGGTGCAACTTCGAATCACTTTTCAGATCTT GATCCGGCGCAATGCGTTTTTCCTGAAAATATGATTGATGGTAATGATGCAATTGATGGAGATACTGATCGTGTGGTTTA CCCTGGAGCTGACCATGCAGTTGAAGACAATCTTCCCATTGAGCAAAATAGTATACTTGAGGAAGGATTGCAAATTCGTG GTGATGATGTGTCTTTGAATGGAGCTGCTGAGGAATTGGGGGTTCCAGAAAATATGGATGTAGATAACTTGATTGGAGAT GATAATATGCGTTTATCTGCATTGGATCATGTCGACAATGATCATGAAAATTTGTGTTCTGCGTTTTATGAAAATAATCT GTTTGATTCACCTGAGTTAGAGTGTGGGACATCATTTAACGCCTTACCATTATCTCCGCTGCCTGAAGTGCCTGAAATGA CTGAATTATGGAGAACAGATGAGAACATTCCAGTAGTTAATTTTCAGTATGATGGTGGTTTAAAAGATTCTGTTGCTTGC GGTCTGGCTGACCTGTCTAATGAACTGGAATTTGATGATGATGAACTGTTTTTGATGAATGGTGATAGAAAAGATGGGAT TGATAAGGCTTACTATGATGATTTAAGTTTGCTCTTGCGATATCCTCCAATGGATGTTAGTCCAGATCAGGTACCTGAAA AGGCTGAAACAGAGTTGTTATTGGACTCACATGCCCATGTTGCAGATCTTTCAGTTCCATGCCATGCAAAAGTAGATGAT AACTCGGAGTCGCAATGCAGTAGTGTGCAAGTAGTTCACAAAATAGAGTTCCAAATGCCACCTTCTGCCTCAGCTAAAGA TCCTCATTTTCCTGAACTAGTTAACGGAGTTATTAACTGTGTACTGAATACTGAGGACCCAGAAGTTCCATCCAATGATG ACGTTTTCCTACCCTTTGATGTGCCTCAGTCAACATTTTCTCATTCACATAAATCAAAATCTAGAGAATTCAGTAAATCA ATTCCGTCAACTTCTCATGATTATGGATTTAGTAATCATAGAGCTAGTGAAAGAGGTAAAACTTTGATGCAGGTTGAACA AAAAAACTCCAGACAGCCTTCTCAGATGATGGGATCTCAACTCCCAGGGCCTGTTTGTGGTTCTAAGGTAAAATGTGAGT TGCCCTATGGTCATGCATCACACACAGTGTCTAGGAGTGCAGTTATTGTTTCTGGTGGCTTAGTTGGAAACAATAATGCT GCAAACACAACCAATGCTCCTCTGCATGAAAATACAAAGGAAGAGCCTACCAAGGTTGGCTTGGCAAAGCATCTGAGCAA TTGTGCGACAAATTCTTTGATTGAGAAACCAGGCGTTGGTTCTAATGACTTGAGGAACCATCCTAAACCTAATGGTTCTA GCATACAACAGGAACAAGATGTAGCCTTGTCACTTGAAAATCATCAATTGCAACATACTGAAATGGGATCCTCAGATGTT CCTGAGGAGGACGAGGATTCTATAGAAAGTGATGATGATGTTCCTTATTATTCTGATATAGAGGCAATGGTACTTGATAT GGACTTGGATCCTGATGATCAGGATTTGTATTATAATGAGGAAGTATCAAGTTATCAGCATGAGGAAACTAAGCAAGCTA TCGTAAGGCTGGAACAGGGTGCTGATTCTATTACGCAGAGGGCCATTGCTTCACATGGAGCATTTGCTATTTTATATGGT CGCCGCTCAAAGCATTATATTAAGAAAGCCGAGGTTTTACTTGGACGAGCAGCAGAAGGTGTTCCTGTGGACATTGACTT GAGCAGAGAAGGGAATGCCAATACAATATCTCGACGTCAGGCAATTATAAAGATGGACAAAGATGGATCTTTCTACATTA AAAACTTGGGCAGGAGTTCAATCCTTGTAAATAACAAAGAAGTGCGCACTGGTCAGTGTCAAAGACTGCATTCCGATTAT CTGATTGAGTTGAAGAGCATGCCATTCATATTTGAGACAAATGAAAGTTGTGTGAAGCAGTTCCTGGAGCATATGACTGA CAATGGAGTGTAA
Protein sequence (LotjaGi1g1v0424900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALPTVFPWTREDDFLLKNAVESGASLESLAKGAVKFSRRYSIKEIQDRWYSILYDPVVSAESAATMADFETRATPLPS RFFNFGHSKGRKSVSVRSKCKSVRSSYYAMRKRLRKDSATSMDFNFLVDPENGDYGLNGSEPLPENSIPDGATSNHFSDL DPAQCVFPENMIDGNDAIDGDTDRVVYPGADHAVEDNLPIEQNSILEEGLQIRGDDVSLNGAAEELGVPENMDVDNLIGD DNMRLSALDHVDNDHENLCSAFYENNLFDSPELECGTSFNALPLSPLPEVPEMTELWRTDENIPVVNFQYDGGLKDSVAC GLADLSNELEFDDDELFLMNGDRKDGIDKAYYDDLSLLLRYPPMDVSPDQVPEKAETELLLDSHAHVADLSVPCHAKVDD NSESQCSSVQVVHKIEFQMPPSASAKDPHFPELVNGVINCVLNTEDPEVPSNDDVFLPFDVPQSTFSHSHKSKSREFSKS IPSTSHDYGFSNHRASERGKTLMQVEQKNSRQPSQMMGSQLPGPVCGSKVKCELPYGHASHTVSRSAVIVSGGLVGNNNA ANTTNAPLHENTKEEPTKVGLAKHLSNCATNSLIEKPGVGSNDLRNHPKPNGSSIQQEQDVALSLENHQLQHTEMGSSDV PEEDEDSIESDDDVPYYSDIEAMVLDMDLDPDDQDLYYNEEVSSYQHEETKQAIVRLEQGADSITQRAIASHGAFAILYG RRSKHYIKKAEVLLGRAAEGVPVDIDLSREGNANTISRRQAIIKMDKDGSFYIKNLGRSSILVNNKEVRTGQCQRLHSDY LIELKSMPFIFETNESCVKQFLEHMTDNGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 828 | 827 | 6.3E-256 | ||
| PANTHER | 2 | 828 | 827 | 6.3E-256 | – | |
| Pfam | 10 | 73 | 64 | 3.7E-15 | ||
| MobiDBLite | 465 | 497 | 33 | - | – | |
| MobiDBLite | 502 | 521 | 20 | - | – | |
| MobiDBLite | 592 | 619 | 28 | - | – | |
| MobiDBLite | 632 | 653 | 22 | - | – | |
| MobiDBLite | 639 | 653 | 15 | - | – | |
| Gene3D | 679 | 826 | 148 | 2.0E-10 | – | |
| SUPERFAMILY | 709 | 814 | 106 | 2.01E-11 | ||
| CDD | 720 | 813 | 94 | 2.28019E-8 | ||
| SMART | 731 | 788 | 58 | 1.7E-6 | ||
| ProSiteProfiles | 732 | 788 | 57 | 11.768 | ||
| Pfam | 733 | 804 | 72 | 1.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | G-quadruplex RNA binding | Interacting selectively and non-covalently with G-quadruplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. | ||
| Cellular component | MLL1 complex | A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5. |
Expression pattern of LotjaGi1g1v0424900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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