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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0428700 |
| Transcript ID | LotjaGi1g1v0428700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT1G47870.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FV70|E2FC_ARATH Transcription factor E2FC; TrEMBL-Plants: tr|A0A151TCJ9|A0A151TCJ9_CAJCA Transcription factor E2F4; Found in the gene: LotjaGi1g1v0428700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92370291..92375112) extracted from Lotus japonicus Gifu genome v1.2.
CGTGCGTATTCGAACTAAACACAAACACACACATCGCAATTCACAAACACCACACCGCTTCCTTCTTCTCTCTTTGCATT CCTCCTTTGCTTTCATTTGCTGCTGCTGTTACCGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGCTTCTGCTG CTGCTACATTCTCCCTCTCTCTTTCTCTCTCTATAACTAACAACTGTTACTTCATCTTCTTCTTCTTCATGTCGACTTCC GGCGACGATCACAACCACTTCAGATTCCCTCACTTTCATCACAATCCTCCTCCTCCGTTTTCTATTCCTCCTCTCACCGT GAGTTTCTCTTTTCCTTCCTTCAATCAATTTGCTTTCGTTCTTTTTTCTTCAATTACAGGATCGCATCGTTTTTTCCACC CTAGATTCCATTCACCCATGAACAAAAAAAAACGATCATGTTTTCCACCCTAGTTTATTTCTCTCGTTCGTTTTTTTATC CACTTCAGTTATACCTATTTTATTTATTTTTTTGTTCCTAATCTTCTAAGAGTTACTAGTTCATATGAACTGCAATTTAA TGTTCAGCTCCAATTATCTATGAATTGTAGAAAATAAAAATTATTATTATTATTATTAATTAATTAAAACTTGCGGAGTT CAAGTTTTAATTAGGGCACACTCATTCAAGTGTGGACATGGTTCTTCCAATTCATTCATTTGGCGTGTTGCAACTGTTTA TTTGTGATGATAAACGAACTAGTTTTTTTTTTTTTTGTTGGGATGCATTCTATTCTTGTTTCCTTGTCCTTTGGTTGTTG GTCTTCAATTGGCTATGCACAGCTTATATTCGAACTTTGTTTTCCGCTCAATTGACTCGTGTATCGTGATCATGTTTGCT TGAGGGTTAATTATTAGAAATATATCTTGTTTGTTGAATAAGTATTTATCAATTATTAGTCCTTCTAATGTACTTCCTCA CATCGAACTTTAATTTTTTACATTCAACTATCTATGCAGGTGAGTGAAAGATTTGAAATCAATAATTTCACGTCCGGCCC AATTAAGATTGAACCAGTTCCCAGTCATAGCAAAACAGTTAGCCTAACTCCTTCACTTCAAGCCGATCAAAGAGGAAAGC GTCACGGTAAATCAAAAGTCTCAAGAAATGCAAAATCAGGGACTAACGGTTCGAATGCAGGTACCAGTCTTGTAGACTAT GAATCTCTTAAAATGTGCATGAATTAAATATCAATATCTCACTTTTTTTTGGTTTTAAATTTCTCTTGGATGGTTTTTTT CCTTTCAGAGTCTCCAAACTTGACTGCTGGTAACAACTGTCGGTATGACAGTTCCTTAGGTATGTCCATGCTTAAGTAAT CTTTTCTACTCGGGTCCACTCGCACCAGTAGTTTGTATTCCTTTTTGATGCTCTTTTAAACAAGTGTATTCATTAATTTG GCTCAGTTTTGTAATGGACAATTTTATCACCTACACTTGTCAGGATTGTTAACCAAGAAATTTGCCAGTTTGATCCGGGA TGCTGAGGATGGTACTCTTGATTTAAACAAAACTACTGAGATCTTGGAGGTATACACTACATGTCTTTCATTGTTTACAT GGCTGAAGGCCTCTTTATCAGGGCTTATTTTGAGCATTTCCTCTGGCACTATTAATTCAAATTTTCTTACTTGTGCTATT AGCATAATATATTTCTACTACCTTTTTTTTTAAAATGTGTAACATTGGTTATTGCAGGTTCAAAAAAGGAGAATCTATGA CATCACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACGTCAAAGAACCATATACGGTGGAAGTAAATATCTGACC TATTTGTTTGTTACTTTGTTGCTTTTTATCATGTATATGAAATGATGATTAACCATGGGCCTTAAGAACAGGGGATGTGA TGGACTTGGGCCGCGGGAACTGGATGATCAAGTTAATTGTCTAAAGGTTTTGGATCTTTTCTACTTGTCATTTAATTCAT GTGTTTTATATTTGCTGCTTTTAACAGCTTGCATGATTGCCTTGGATTGTAAACATCTCCACTTAGTTTTTCATATACCA TATTGGTTAAACACATTTAGCCTCCTTTGAAGCTGCGATTTTCAGAAACCTAGGATTTCTTCTTGGCCTCACATTCCTAG TCATCTGAACAGACATTGTTGCACCTAGGAATTTTTGGCTTCTAAATTCTGTATGGAAAAAATAGAAATAATCGTGAATC CCCTCGAATATATGGCTTCCATGTGCAAATTATTTGTTGGTGCTTATACAGATAAAATGTTGCTAAGGACAAATTCAATG GTAAAAACAAAAGTCAAGTTGCTGGCAGTAAGCTGCAACTTGAGCTGCTTAAGGGATTATTCTCGAAACCTAAAGAAAAT ATTAGGCCGCACAGATGTCAGTGCCCTGTAGATACATTAAGCTTGATATGGTTTCTGAATAGCTTGAGTGTATCTTCCAG AATAGTATATGATGTGATGCTTTTGAATATAGTTTCTTGGATGAGGCAAAATCTATATGCCATATGATATTATGAGATAT GAATTATGGTACTATTTAAATAGGGACAGTTATAAACTGCAGATTGTGGAAGTGAATCAATATATCTTGCTGTTCCTACT GTGGATTTTATATACCTATGCAGTTAAGTAGGAGAGATTGTAGCAAACTTCCACTTGAGCTAAAGACTGATGGAATTGAT CTTCACTTCTATTATAATTTAAAATGAATGCTGATAGTAACATTTTAGCTCCATTTTTAATGAAACAATATACTGCAGTG TGCAAATGATTCTATCCAACTCTGAAAGTTTGTTTCATTACAGGCTGAAATTGAAAGTCTATATGCAGAAGAATGCGAAC TTGAGGACTGTATAAGGTTTGCTAGTTGCTACTAATGACATTTATGAAAAAATTTCAGGCCTATCTGTTGTTAATTATCA TGCTAATTTCTCAGGAAAAAAGAGGAGCTTATAAGAAACCTAGAGGAGAGAGAAGACTCTCAAAAGTATGAATTTCTGAC AACTTGTCTGATATTTGATTTCAATTTCTTACAGTTATTTGATAATGAGGTTGGTTGGTTGATCATTAGGTACCTTTTTG TAAACAAGGAAGATATTCTAACCCTTCCATGCTTCCAGGTCAGTTTTCTATAAATATTGAAAATTTTATAGAACATTGTA TCCATTGTCACCCCTTCTATTAACTGTTTTTACAGAATCAAGAACTTATCGCGATCAAGGCTCCAAAAGCTAGTGTCATT GAGGTCCCTGATCCTGACGAGGTAGTTTTCTACTGAAAGGGACGTTAAAATTTGTTTGTTATACAGTGTCATGAACATGT TATCCCAAAAGCTTAAGCGGTTGGGTAAAGAATACATAAATGATTATATATTGTCTTTGTAACAAGCCCCCTCACGCAAG AGCCCATTGGGCTTGAAGCGTGGATAATGCATAAGCCCACCAATCTTGTGCTGAAATTCAACTTCTTATTAGAATAATGG GGAAACAAGGATGGAACTCTATGGTCACAGAGGCTTTGCCTTGGTATCATGTAATGAACCAATTATTCCAAAAGTTTAAG CAGTTGGTTAAATGACACAAGAATGACTTCATATTATATTTGTTGCATACCGGATAACAAGTTTCTAATTGACTTCTCAA TTAAATAATGAGCAGGAATTAGGTTTCCGGCAAAGGCAGTACAAAATGACTGTCAGAAGTGCAACTGGACCAATACATTT GTACCACCTGAGGTACTTCTCTTCTGCTTCTCTCTATTACTTCTCTTATGGACTAAATTGTCATTGTTGGTTTAAGGTCC TTTATTTCTTCTACGTCTTAAACTGATCTTTGTTATGCTTGAAGGAAGCAAGAACGCAAGTTTGAGGATTGTGGTGCCAA GCAAATGAAATCAATAGATCCATCATTGAATAACGACCACTGCAGAATGGATGATCAGAAAACTCCTTCTGAGAGATTGA GTCCGCAGGGTTCAGAGGCATTTGGAATTCAAGAAATCACTCCCATGGATTTTGCAGTATGCATAACTCTCAGCTCTGAA TGATTTATTAAAAGCCAACATCTGGAAAATGGTAACGATTTTAGGTGTTCATGTTTACTAATTTTTTTTTCAATTTTTCA CAGGTCGATGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCTGACAGAATTATGGGGTGGCAAAAGTACCTTCTA ACTAATATTTATTGTAGGAACTGGGGTTTTGGCTTTCCCTTGATACAAGTGGACCAGTTTGAAAGGTCCTGGTATATGAA AGTTTTTTTCTCTGTTCAACACATGCAGTTGGAACAGACAGACGGACTTCAACATGAATAATCTAATAGGAGCATTGCAT TCACTAAAAAACAAGCATTGCTGACAGATATGGTCAATATGTAAATATTAGGCTGCTAACCATTGTAGATGACACTCAAA GGGTAGGAGAGTGCCTTTGGTGTTCTCTTTATGAGCGATTGCCTGAAGTATAAGTATCTAATTTACATTATTGTTGTTTA TTACATAGTTGTAAGTGCACAATACAAATAATTTTAAGGAGAGAATAAAAGAGAGGATGAAAAATAAGTGTTGATGGAGA AAATAGAACTTGGGGCACAAGCCTGTCGAGAAGAGGAAGAAATAGTTATTATTTTTTCATTTATGTTCAATTTTTGGGTG ACCTTGTAAGTGGTACAATTTATTAGTAACAAAGTTCAAAGTTTTTGGCCTTTATTTCGTCTTTTGTTTGATCATGTGAT CATTTTAAAATAAACCTTGAAG
CDS sequence (LotjaGi1g1v0428700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACTTCCGGCGACGATCACAACCACTTCAGATTCCCTCACTTTCATCACAATCCTCCTCCTCCGTTTTCTATTCC TCCTCTCACCGTGAGTGAAAGATTTGAAATCAATAATTTCACGTCCGGCCCAATTAAGATTGAACCAGTTCCCAGTCATA GCAAAACAGTTAGCCTAACTCCTTCACTTCAAGCCGATCAAAGAGGAAAGCGTCACGGTAAATCAAAAGTCTCAAGAAAT GCAAAATCAGGGACTAACGGTTCGAATGCAGAGTCTCCAAACTTGACTGCTGGTAACAACTGTCGGTATGACAGTTCCTT AGGATTGTTAACCAAGAAATTTGCCAGTTTGATCCGGGATGCTGAGGATGGTACTCTTGATTTAAACAAAACTACTGAGA TCTTGGAGGTTCAAAAAAGGAGAATCTATGACATCACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACGTCAAAG AACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCGCGGGAACTGGATGATCAAGTTAATTGTCTAAAGGCTGAAAT TGAAAGTCTATATGCAGAAGAATGCGAACTTGAGGACTGTATAAGGAAAAAAGAGGAGCTTATAAGAAACCTAGAGGAGA GAGAAGACTCTCAAAAGTACCTTTTTGTAAACAAGGAAGATATTCTAACCCTTCCATGCTTCCAGAATCAAGAACTTATC GCGATCAAGGCTCCAAAAGCTAGTGTCATTGAGGTCCCTGATCCTGACGAGGAATTAGGTTTCCGGCAAAGGCAGTACAA AATGACTGTCAGAAGTGCAACTGGACCAATACATTTGTACCACCTGAGGAAGCAAGAACGCAAGTTTGAGGATTGTGGTG CCAAGCAAATGAAATCAATAGATCCATCATTGAATAACGACCACTGCAGAATGGATGATCAGAAAACTCCTTCTGAGAGA TTGAGTCCGCAGGGTTCAGAGGCATTTGGAATTCAAGAAATCACTCCCATGGATTTTGCAGTCGATGATGACTATTGGTT TCAATCAGATCCTGGAGTGAGCCTGACAGAATTATGGGGTGGCAAAAGTACCTTCTAA
Protein sequence (LotjaGi1g1v0428700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTSGDDHNHFRFPHFHHNPPPPFSIPPLTVSERFEINNFTSGPIKIEPVPSHSKTVSLTPSLQADQRGKRHGKSKVSRN AKSGTNGSNAESPNLTAGNNCRYDSSLGLLTKKFASLIRDAEDGTLDLNKTTEILEVQKRRIYDITNVLEGIGLIEKTSK NHIRWKGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIRKKEELIRNLEEREDSQKYLFVNKEDILTLPCFQNQELI AIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHLRKQERKFEDCGAKQMKSIDPSLNNDHCRMDDQKTPSER LSPQGSEAFGIQEITPMDFAVDDDYWFQSDPGVSLTELWGGKSTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 42 | 97 | 56 | - | – | |
| PANTHER | 46 | 362 | 317 | 1.4E-151 | – | |
| PANTHER | 46 | 362 | 317 | 1.4E-151 | ||
| MobiDBLite | 79 | 97 | 19 | - | – | |
| Gene3D | 97 | 169 | 73 | 2.8E-27 | ||
| SMART | 102 | 167 | 66 | 9.0E-34 | ||
| SUPERFAMILY | 102 | 165 | 64 | 2.04E-16 | ||
| Pfam | 104 | 167 | 64 | 7.5E-24 | ||
| CDD | 178 | 280 | 103 | 2.6206E-32 | ||
| SUPERFAMILY | 178 | 283 | 106 | 3.92E-24 | ||
| Pfam | 183 | 280 | 98 | 4.2E-24 | ||
| Coils | 197 | 217 | 21 | - | – | |
| MobiDBLite | 300 | 325 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0428700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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