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LotjaGi1g1v0430100.3

Overview

Field Value
Gene ID LotjaGi1g1v0430100
Transcript ID LotjaGi1g1v0430100.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|W9QZH4|W9QZH4_9ROSA Vacuolar protein sorting-associated protein 35B; Found in the gene: LotjaGi1g1v0430100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:92508874..92510637) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACCGTCGGTGATGGCGCTGTGGGCAAAACCTGCTTGTTGATTTCCTACAC CAGCAACACTTTTCCCACGGTTTGTTTCCCTCTTTATACTTCACTTCAATCTCGTTTTTTATTTTTCCCTTTCTGAATTT GATTATCAAGTATTTGGAACTGGAATTAGAGATATATGAGGTGGAATTACAACTACATGTTCTCAAACTTCATCGGATTT GATGTTTCAAGTGTTGTTTGACTTGTTCTAGAACTTGCCAGATTTGGGGATTCAGGTTATTGTTATCACTACTACTGTTT TTGTATTTAGAGCCTGTTTGGATACGAGAAGCTTATCTACTAGAAAATGCGCTAAATAAGCTTCGATAAGTGCTTTTTGG TTCGAATTAGTTAAATGAATAAATGATCCTTGATGGACCAAGTTCTTCAACATCAATTAACATAATTTGATGCAGTGCAC TTGCAGCCTCTGATACTCTCATTTAAAGTTGCATGTGATTTGATTAGGAGCAGAGGAGTTATTACCCTTACAAGTTCTAA ATAAAATTTTGATCATAAATAGCAATTGTTTTATATTGTCAAATGTCAAGGACTTAGGCCCGGTTTGGAAGAACTTATTT GAGCTTATCTGATAGCATAAGCTCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTAGGGTAGGACCATAAGCTG TTTTGAGCTTATTTCCATAAGCTACTCAGGATAGCTTATGAAAAATAGCTTATGCTTATATATAGCTTATTTATGAATAA GCGCTTATGTCAGTGCTTATGGTCATTAGCGCTTAATTAAGCTGTGTTTCCAAACAGGGCCTTAATAGGCTTCAGGGAAT GGATTATTTTTACTTTGTTTTCCTATATTGATTTTTTCAGCTAATCTTGATTTTGTTCTTTGACAAATAATAGCTTCATG GCCTGACCCTTCTCCATTTCTGTTTGTCATCAATAACAGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGT TGTTGTGGATGGAAGCACTGTAAACCTAGGTTTATGGGATACTGCTGGTAACAGGGCTACCAATTCAATTGTATACAATT GAGTATCATTTTCAGAGCTTTGTTTTGTTTTCGGTGGGAAACTTATTGTTTGATTAACAGGTCAGGAGGATTACAATAGA TTAAGACCCTTGAGCTACCGAGGAGCTGATGTCTTTATACTGGCATTTTCTCTTATCAGCAAGGCCAGCTATGAAAATAT TGCAAAGAAGGTTTGTTCCCTTCATATGAAGATTGAAGAATTTGATAAGGATGGTGATCATTTAAATTGGTTTTTGCAAT AAATATAACTGATAAAGTTACTGTTCTTTTGGCTTTTCCTTTCAGTGGATCCCTGAACTGAGGCATTACGCACCCGGTGT TCCAATAATTCTAGTTGGAACGAAGTTAGGTAAGCCTCTACCACTTCTATTCCTTGAATGGTTTGACATTGCTTAATTAC TGGTTAGCTCCGGTTATTTAAAGGCCCCAAGGCTTTTCTTTACTTCAAAGTTCAGAGCAGTTTATTACATTACCAGTTCA AATATATTATAATTTTTGGATTTTGTTTTTCTTTGTGCCCACATTTGCTTCTTAAGTTCTAGTATTCATATACCAACCTA GATATTAAATGGTTTCATGGATGGAGACATTGATCTTCTCATGATCATAAGTGGCTGTGCTTAGGTGTGTTATTAATCCC CTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0430100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACCGTCGGTGATGGCGCTGTGGGCAAAACCTGCTTGTTGATTTCCTACAC CAGCAACACTTTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTTGTTGTGGATGGAAGCACTG TAAACCTAGGTTTATGGGATACTGCTGGTCAGGAGGATTACAATAGATTAAGACCCTTGAGCTACCGAGGAGCTGATGTC TTTATACTGGCATTTTCTCTTATCAGCAAGGCCAGCTATGAAAATATTGCAAAGAAGTGGATCCCTGAACTGAGGCATTA CGCACCCGGTGTTCCAATAATTCTAGTTGGAACGAAGTTAGAATGGTTTCATGGATGGAGACATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0430100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLEWFHGWRH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24072:SF308
1 121 121 1.3E-83 –
ProSiteProfiles
PS51420
1 128 128 19.156
IPR003578
PANTHER
PTHR24072
1 121 121 1.3E-83 –
Gene3D
G3DSA:3.40.50.300
3 124 122 6.4E-46 –
SMART
SM00173
4 128 125 2.3E-8 –
SUPERFAMILY
SSF52540
6 124 119 5.94E-42
IPR027417
PRINTS
PR00449
7 28 22 1.1E-27 –
SMART
SM00175
7 124 118 3.2E-10 –
TIGRFAM
TIGR00231
7 120 114 1.3E-31
IPR005225
Pfam
PF00071
8 120 113 1.6E-40
IPR001806
SMART
SM00174
9 125 117 1.2E-59 –
PRINTS
PR00449
30 46 17 1.1E-27 –
PRINTS
PR00449
47 69 23 1.1E-27 –
PRINTS
PR00449
109 122 14 1.1E-27 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0430100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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