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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0430100 |
Transcript ID | LotjaGi1g1v0430100.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3T4P6|I3T4P6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0430100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92508874..92511378) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACCGTCGGTGATGGCGCTGTGGGCAAAACCTGCTTGTTGATTTCCTACAC CAGCAACACTTTTCCCACGGTTTGTTTCCCTCTTTATACTTCACTTCAATCTCGTTTTTTATTTTTCCCTTTCTGAATTT GATTATCAAGTATTTGGAACTGGAATTAGAGATATATGAGGTGGAATTACAACTACATGTTCTCAAACTTCATCGGATTT GATGTTTCAAGTGTTGTTTGACTTGTTCTAGAACTTGCCAGATTTGGGGATTCAGGTTATTGTTATCACTACTACTGTTT TTGTATTTAGAGCCTGTTTGGATACGAGAAGCTTATCTACTAGAAAATGCGCTAAATAAGCTTCGATAAGTGCTTTTTGG TTCGAATTAGTTAAATGAATAAATGATCCTTGATGGACCAAGTTCTTCAACATCAATTAACATAATTTGATGCAGTGCAC TTGCAGCCTCTGATACTCTCATTTAAAGTTGCATGTGATTTGATTAGGAGCAGAGGAGTTATTACCCTTACAAGTTCTAA ATAAAATTTTGATCATAAATAGCAATTGTTTTATATTGTCAAATGTCAAGGACTTAGGCCCGGTTTGGAAGAACTTATTT GAGCTTATCTGATAGCATAAGCTCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTAGGGTAGGACCATAAGCTG TTTTGAGCTTATTTCCATAAGCTACTCAGGATAGCTTATGAAAAATAGCTTATGCTTATATATAGCTTATTTATGAATAA GCGCTTATGTCAGTGCTTATGGTCATTAGCGCTTAATTAAGCTGTGTTTCCAAACAGGGCCTTAATAGGCTTCAGGGAAT GGATTATTTTTACTTTGTTTTCCTATATTGATTTTTTCAGCTAATCTTGATTTTGTTCTTTGACAAATAATAGCTTCATG GCCTGACCCTTCTCCATTTCTGTTTGTCATCAATAACAGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGT TGTTGTGGATGGAAGCACTGTAAACCTAGGTTTATGGGATACTGCTGGTAACAGGGCTACCAATTCAATTGTATACAATT GAGTATCATTTTCAGAGCTTTGTTTTGTTTTCGGTGGGAAACTTATTGTTTGATTAACAGGTCAGGAGGATTACAATAGA TTAAGACCCTTGAGCTACCGAGGAGCTGATGTCTTTATACTGGCATTTTCTCTTATCAGCAAGGCCAGCTATGAAAATAT TGCAAAGAAGGTTTGTTCCCTTCATATGAAGATTGAAGAATTTGATAAGGATGGTGATCATTTAAATTGGTTTTTGCAAT AAATATAACTGATAAAGTTACTGTTCTTTTGGCTTTTCCTTTCAGTGGATCCCTGAACTGAGGCATTACGCACCCGGTGT TCCAATAATTCTAGTTGGAACGAAGTTAGGTAAGCCTCTACCACTTCTATTCCTTGAATGGTTTGACATTGCTTAATTAC TGGTTAGCTCCGGTTATTTAAAGGCCCCAAGGCTTTTCTTTACTTCAAAGTTCAGAGCAGTTTATTACATTACCAGTTCA AATATATTATAATTTTTGGATTTTGTTTTTCTTTGTGCCCACATTTGCTTCTTAAGTTCTAGTATTCATATACCAACCTA GATATTAAATGGTTTCATGGATGGAGACATTGATCTTCTCATGATCATAAGTGGCTGTGCTTAGGTGTGTTATTAATCCC CTAACTAATTATACTCACATAAATTGGATTACATTTTCTACTAAATTTGTTCTCAATGCTTATGCAGAAATAAAAAAAAT AAATTTGTTAGTTGATTTGTTTTTATGCGAAGAAAATAGGAGTAGGGCAGAGTACATAAGACTTGTATCTAGGTTGTGTT TTGAGAGTGCATGACAAAAGTGTTCTTTTTCTTTCTATGATATCAGTTCACAATTAAATTCTTTTCTGTGATGAATGCTG CTTGAAACACTTCCAACCCGATCCACCACCAATTTTGAATGATTTAATAATTTGGTCTGCAGATCTTCGGGATGATAAAC ACTTTTTGGCAGACCACCCTGGTGCAGTACCAATTACTACAGCACAGGTAGGAAGTACCATAATTTTTCATATTTTCTCC CCTTTCTTTTGCTAGAGCAGGAGGCATAAGTTATTGATTTTGAAATCATGTTGATCTACACATTGATATTTGTTTTCATC ATGGTTGAAGGGAGAAGAATTGAGAAAGCTGATTGGAGCTCCTGCCTACATCGAGTGTAGTTCGAAAACACAGCAGGTAC AGTTCTCTCGGATAAAATTCATTTGAGTCATTTTTTTTCTTGTCATTTCTATCATGGATTTTCATGTGCTCTTGGGATGA CAGAATGTGAAAGCCGTCTTTGACGCTGCCATCAAAGTGGTTCTGCAACCGCCAAAGCAAAAGAAAAAGAAGAGGAAGGC ACAGAAGTCCTGCTCAATATTGTGA
CDS sequence (LotjaGi1g1v0430100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTTCCAGGTTCATCAAGTGTGTCACCGTCGGTGATGGCGCTGTGGGCAAAACCTGCTTGTTGATTTCCTACAC CAGCAACACTTTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTTGTTGTGGATGGAAGCACTG TAAACCTAGGTTTATGGGATACTGCTGGTCAGGAGGATTACAATAGATTAAGACCCTTGAGCTACCGAGGAGCTGATGTC TTTATACTGGCATTTTCTCTTATCAGCAAGGCCAGCTATGAAAATATTGCAAAGAAGTGGATCCCTGAACTGAGGCATTA CGCACCCGGTGTTCCAATAATTCTAGTTGGAACGAAGTTAGATCTTCGGGATGATAAACACTTTTTGGCAGACCACCCTG GTGCAGTACCAATTACTACAGCACAGCAGGAGGCATAA
Protein sequence (LotjaGi1g1v0430100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQQEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 144 | 144 | 8.3E-97 | – | |
ProSiteProfiles | 1 | 145 | 145 | 20.146 | ||
PANTHER | 1 | 144 | 144 | 8.3E-97 | – | |
Gene3D | 3 | 145 | 143 | 1.9E-50 | – | |
SMART | 4 | 142 | 139 | 6.6E-10 | – | |
SUPERFAMILY | 6 | 126 | 121 | 1.9E-44 | ||
CDD | 6 | 144 | 139 | 2.80118E-113 | – | |
SMART | 7 | 144 | 138 | 1.4E-12 | – | |
PRINTS | 7 | 28 | 22 | 1.2E-29 | – | |
TIGRFAM | 7 | 126 | 120 | 2.3E-34 | ||
Pfam | 8 | 127 | 120 | 3.9E-43 | ||
SMART | 9 | 145 | 137 | 1.6E-75 | – | |
PRINTS | 30 | 46 | 17 | 1.2E-29 | – | |
PRINTS | 47 | 69 | 23 | 1.2E-29 | – | |
PRINTS | 109 | 122 | 14 | 1.2E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi1g1v0430100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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