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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0430400 |
| Transcript ID | LotjaGi1g1v0430400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger FYVE domain-containing protein 1; TAIR: AT1G20110.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9ASS2|FREE1_ARATH Protein FREE1; TrEMBL-Plants: tr|G7J5A0|G7J5A0_MEDTR RING/FYVE/PHD-type zinc finger protein; Found in the gene: LotjaGi1g1v0430400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92535891..92542169) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCACTAAAAGCAAATTAAAAAAACACGACAAACCAACCATATATAAAGTCAGTCAGTCATTCATCTCATCTTGTCAT ATAATCTCCTCGAAGCAAAGAACCACTGTTCATCTCTCTCCTACGACTCACTCACAACAAATAAATATCACAAAACAAAC TAGAATAGAATAACCTTGTTCTCATTGATTGATTCCATCACACGGAACAAACAAACAAACAAACCTTCTTCCAATTCCAA TTCCAAACCCAGTTCTCATTCATCTTCCTCCAAACTCCAATTCAACCATGCAACAAGGTGATTACAGTTCCGCTCCATAT TACCAATTCCCTCATCTCCAAAACCCTAATCCCATTCCCAGTAGTAACCCTAACCCTTCCGATCCACTCCCCAATCCTTA CGCTTCTGCTCCTCCTTTCACTCCCAATTACGCCGCTCCTTCCTCCGATTACCCTTCTTCCTACCCCTCTTACCCCCCAA ACCCCGATCCAATTCCACCCACTGCTCCTCCTTCTTACCCTCCTCAATCATACAATCCTCCTCCCTACGAATCAATCCCA TCCTACCAACAACCACCCTATTACCCCCCTTACGATCAAAACTACGCCCCTCCTCCAAACCCTATTCCCAATTCAACCTC CTCTTTGTACAACCACGGCGGATCGTCACTCCCGCCGATTCCAGCCTACGAAACCCCCTATGAGAATCCGGTGAAATCCG ATTACGGCGGTGGCGGTGCTTATTTCGATGACAGGTACGGGAGTTTCAATCGGACTCGCTCTGACCCGGGATCCGATCTT TACGGGAAGCGCCACGATGGCGGTGGTGGTGATGATGGTTTTGGAGATGGGGTGTATGCTTATGAAGGGGGCAAGGTGGA ACCCTATGGGGCGCGGGGGACTGCTCCGAAATCGTCGACTTGGTCTTCGTTTGATGATTATGGGAGGTCGATTAGTGTTC CCTCTCCGAAGGAATCGTCTCCGGCGAGTAAGATTGTGAAAGCTGTGCCCAAGGTTGATGTTCAGGAAGATGTGAGAAGT GCGGTGCAGAAATTTCGGGTCAAGATGTTGGCTGAAAGTGTTGGTCAGGGCACTATGGATGTTCTCTGTCAGGTTTGTAG AGGATAGCAACTAGAGCTATTTGTTTATGGTTGTCTAATTTATTATTCTGCTAGTTTAGGCACCAGTTACACTAGTTTAA CGGATCATGTAACAATTTAGTCATTGCATTCGTTTACACTGTTATCATAATAATTGCACTGAGTTCTGGCTACTGGATTA CCATCATATGCCTGTGTGTGCTTCCTTTGTGTAAAGTAGGTTAATCCTGGATCTGCTTTATGACCTTAAGCCGAAATAGG GGTGATTTCGGTCTAGGTTTGCTGATATATGAAACATTATAATTATGCTCAGCTTAAGTGGATTATACTTTTTTTCTTTA GAACATGATGCATTTGCATGTTAGTGTTTACAAAGTAACTAATGAGTAAAGCTTTCTCTTGCCAGTGCTAATTGATCACT CTCTCTTTTTTTTTCACTAACTTTACCTTTTGAAACTCTTAGGCTTACCTAGATTCACAGATTCTTTTTTTTTGAATCTT ATTGGTTTAAAAGAGCGTTTGCGTATTGTCTTGCGTGCATTCATTACAGCTGATAGCTTTGTTACTTTGTTCTTTCAGGT TAGTTTGGATGGAATTCGCATGCTGGATCCAAATACCAATCGGATATTGAGAATATATTCTCTTGAGAACATAACAAGAT GTGATGTAAGCTTGTTGATTTCTTTCGTGAAGCTTCGCTTTGTCTATGAAATTAATTTATTTTCCTAGCCAATCTTAATA TGGTTTTTTGGTAATTGAATCATGCAGAAATTCGATTCATCTACCTTTGCATTTTGGTCAAAAAGCCCTGTGGACATTGA GCCAAGGAGAATCAGATTGCAATCTAATAGTTACACCACTAACACACTTTTGGATACTGTCACTGCTGCAACCATACAGG TATTCACTATTCAGAGTATTTCATCCATTGGTATGGCAATAGATAGTGAATGTTTCTGATAGGTTAGAGCATGCTTATTA TTATGTAAAATCTACTGGAAGACATTGGCCTTTTGTTATTATTTATTATTATTATAATTAATATTTCTGTAAGCTTTCCT TGATAGAGGATATAGTTTAAGTGCATGTTTGTATTTCCATCTCAATGTCTGTTTGAAGCATTCAAATACAAAATTGCACA TTCCTGAAAGCCAAACGTGAAAGAGATCATGAAGGTCCGTTTGTGTTTCTTGAATGTGAATGGAAAAACAAACATATTAG TTGCTTGCCTTGTTTGAGTTGCAATTTCATAGAGACCAGGATTCAATGAATAAATACAGAACAAGCTGAATTGTATCTCT CCTCTACTGTGCGCTATAATGTGTTAAGATAGATGAACAATAATAGAAAAATATAGATGTCTAAACCGAACTCATATTGT CCACGCCCCTCACTCTCTTCTCTCTGTTCTATATACCCCGGATCTAACTGAATTCCTTTCTCCTAGTCCAACTCAGCACC CGTGCCACCTAGGCATTTTATTAGCTGAAGATGCTATGTGTTCCGTTCTGTGTTGGGGATCATTTCCCCTGTTTATCTTG GACCTCTTTCTAAAATGCACGTTAGATTGATGCGGGGGTCATTGAAGGACATTCTTTTCCCCATGATATTATCTGATGAG TGAAGACTGAAAACCCATTATCATTGGATATAATTTGTTATACTTGGTTTTAAATTTCTATCTCAACTTCTCTCTCCAAT TTTATCTTACTTTTCAGATGACATAAAATTTAACTTTTGTTATTGATAAATGGCCTTCTAATCAGAATTTATAATTTTGG CGCTGGCAAACTAAATTTTGTTCCTAAAATCCTCAGATACAGTTCTTTTTCTTGGGGTCTTTGGCCAACTTCTCAAGTTC TCCTAAAGTGTTTTTGATGTTGGAAGTTATTTGTTATATATGTCTTAATCACATCTCATATTTCTCTATACAGTTCAAGG AAATGGGTGGAAGCAGGAGGCCTGTTGAATCATTGAAAGCAAATGAACAGCCTGCAGACAGAAAGAAAGGCTTAGGCGAT TGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTAATATTAGATTCAAACTGAGTTTTCTTGCTACA TTATCTTGTATTCTCCCCCTTTACCGTTAAAACGGATCTTAAGGTTTTAGCAGCAACTTTTCCTTCATACCATATTCAGT TTTACTAGGATGCAGTGTTCACATCCGCTGGTAGTTGGTTGTCAATAAATTTTGTCAATTTTCAAAATGTTAATGCTTAC CCTTCTTTTATTCTTGGGAAGTTTCTAATTGCATGTGTTTTGTATAAAAATTGATTGATCAACTGTATTAACTTACTTCA GTTTAACTGGAATTCTTGTTCATTATTTCTCTGTACACAATTAGAGTTCTTACTAGGTTCTGTATTTTGTCTATAGGTCC CAGATGAAGCAGTCTCAAAATGTACAGCATGTGGTGCTGATTTTGGGGCTTTTATTCGCAGGGTTGATCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCTTTCTTGCGCTATGTTTTCTG TTCTTTGTGCTGTGTTTCTGATGTCATGATCTTCTATGGTTCTTATAGCATCACTGTAGGAACTGTGGTGATATTTTCTG TGACAAATGCACACATGGTAGGATTGCTCTAACTGCGGAGGAGAATGCTCAGCCAGTACGAGTTTGTGACCGTTGCATGG TATGTGTAATTTTCGTTGGCTTCTCTCTTAGTCCATTAGGAGATAATGAGACGGGTACTTTTGTAATACTTGTAGGTTTT CTAACTGGTGAGGTTGTGATGTTGTTAAATGGAATATTCAATTAGGGATTTTTTCTGTGAACTGGCCGTTCCCCCTCCCC TACTTTTGTTATTTATTTGCTAATTGAGTTAGTGTGTCGATTGGTGAAAACACTAGAGGGTAGTCACTTTATCACAAGGG CATATTTAGAGAAACAGAAAAATATAAACTGCAATTGAGTGAAAAGAAGTCAAAACTGAGGGGTAATAAATAGCTGTTAT GTTTTTATCAAGTAGAAATCCTGCCACCCAAGGGCCAGAAATAATATACATTTAGATTGAGATTAGAAGCCATGTTGGTA AGTTTCTTATAGTAACATTCTTGTATAGGCAGAAGTTACTCAGAGGCTGAGTAGTGCTAAAGAGGCATCAAGTAAACCTG TTTTGCAGAGCCATGAGGATCTTGCCAGGAAACTTCAGGTAAATAATTGGGGCATGTTGCTCTGGTTTTTATTTTTTTAT AAGCATGTTGCTCTGTTTGTTTGAGTCTTTTTTTTGAACCCATGAAAGGTTCTAATTCTAATATTTAGTTGCTTAGTTAA GCAAGCTTGTGAGTTAGCATGCATCAGATACTGATTTTTTTTGTCGGTGGATTTCTTTACAGGAGGAGCTGGAGAGAAAT CGAAAATCATCAGGTAAATGTAATCTGAGTTAAACTTCAGGAGTCCGAGTTGAAAAATTGTTGTAGATTTTTAGTTCATA ACTTTTCAAAGAAGGAAGGTTTCAATTAATGTGTTATGTGGGTGATTTAGTAGGAATGGCCAATGTTTTTATGAAGATTT GGATAATCTGTGGCTCATCTAAGCGCTCTGATTTGTAGGTTCCAAGTCTGATGGATCTGGAAGACGGATGAAGGAAGTTG CATGTCCTATCTGCACTGTCCATCTGCAGGTTCAAATAGTGACTAATGTCCCTTCTTCCCCCCACCATCACCTCATCTCC ATCCTCACTTGTGGCTTTGTTTTGTTATTTTTGCAGGTTCAGGTGCCTAGCTCAGGTTCGGAGACCATTGAGTGTGGAGT TTGCCAGCACCCATTTCTTGTGAGTTCCTATTGAGCTCTGATAAACCCAGATGAAGGTGTCTATATGGGTCGACTTTAAA TTTCAATTGCTTTACTCATCTATCTATTGCGCGTTAATAATCAATGATTTGAGATTGCCTGCTGTTTATTTTATCTTTGG CTTACTTGCTAAAGCCTTTTATTGTTTTCATCTTTTGTCACCTGAGCTTGGTGTTTATGAATAGTTGTTTTATCTTTTTA TCTTCTTGGAAAGGTACTCTAATTCGATTGTCCTCTTGTATAAAATAGATGCCGAACTTGTACATGTATAGCTATGCGAA AGTCATTATGGTTTCAGACAATTTAAGGGCTGAATATACTGTTTAGATTTGAGTTTTAAAAGGTTAATGTTTGGACTTTG GAATGTCTAACTGGTCGGCTACTATTTGGCCCTCACTTCACGTTATGTTTTATTATGTATTGGCCGGATTTTGGTGTTAC AATCACTGTTAAAAAGGATATGTGGCACTTTTAATGTGCAATAAGTATTTCAGAACAATGATCATGCTTAATTCATATTT TCAAAATGCTTGATTTCAGAACAGAGTTTTTTTCAGTACTATATGTAGATTAATGTCATTAATAAAATATTCTCCATACA AGATTTATTGGAATATTACACATGGTTTGATGGTAGGGAATTTGGCCTGGATCCGAAATCAAAGCCCATGAAGTTGGCAT TCCAAATGTAGAGAGAACAGAGAGAACTGACCAAAAAAATAAGAGAACAGAGAGTGATACGAAATACAATTTTTTTGGTT ACAATACAAGAAAGAGAAAGAAAGAAGTTTGTCAATTTTTAATGTCCAAAATAAAAAACTTAAAATGTACTTTCATGTCA ATCATTTATTTTTCAACTGATTTCATATTTCATCGGTTCAAACATGCTCTTGCTTAAATAAACTTGGATGAGAGAAAAAG TGGTAATTTTTTATAAAATAACCTATTATATTTAAAGCATTGAATGTTTTTTATCAATGTATCTAGAAATAAATATCTGT ACTTCGCTTTTACTAAGGCACGCTAGACTCCACCCACAAATTCATTCAATATAGTAAATTGTATGTGCGATGGAAAACTC TGCGGGACCAGCAATTTTGTCATAAACAGAGTTGTATTTAATATTTTCTTTTTGTTCTTTTAGAATTTGAAATAGAAGCG ACAAGACTTCACGGTACGTGTCATAAGTGTTACTACTTATTACCTATAAATCATTTAAGTCATTATATCAATTGTCACGA TTGTTACGTACATCCTCTATCTCTCTACGTGATCAAAAT
CDS sequence (LotjaGi1g1v0430400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACAAGGTGATTACAGTTCCGCTCCATATTACCAATTCCCTCATCTCCAAAACCCTAATCCCATTCCCAGTAGTAA CCCTAACCCTTCCGATCCACTCCCCAATCCTTACGCTTCTGCTCCTCCTTTCACTCCCAATTACGCCGCTCCTTCCTCCG ATTACCCTTCTTCCTACCCCTCTTACCCCCCAAACCCCGATCCAATTCCACCCACTGCTCCTCCTTCTTACCCTCCTCAA TCATACAATCCTCCTCCCTACGAATCAATCCCATCCTACCAACAACCACCCTATTACCCCCCTTACGATCAAAACTACGC CCCTCCTCCAAACCCTATTCCCAATTCAACCTCCTCTTTGTACAACCACGGCGGATCGTCACTCCCGCCGATTCCAGCCT ACGAAACCCCCTATGAGAATCCGGTGAAATCCGATTACGGCGGTGGCGGTGCTTATTTCGATGACAGGTACGGGAGTTTC AATCGGACTCGCTCTGACCCGGGATCCGATCTTTACGGGAAGCGCCACGATGGCGGTGGTGGTGATGATGGTTTTGGAGA TGGGGTGTATGCTTATGAAGGGGGCAAGGTGGAACCCTATGGGGCGCGGGGGACTGCTCCGAAATCGTCGACTTGGTCTT CGTTTGATGATTATGGGAGGTCGATTAGTGTTCCCTCTCCGAAGGAATCGTCTCCGGCGAGTAAGATTGTGAAAGCTGTG CCCAAGGTTGATGTTCAGGAAGATGTGAGAAGTGCGGTGCAGAAATTTCGGGTCAAGATGTTGGCTGAAAGTGTTGGTCA GGGCACTATGGATGTTCTCTGTCAGGTTAGTTTGGATGGAATTCGCATGCTGGATCCAAATACCAATCGGATATTGAGAA TATATTCTCTTGAGAACATAACAAGATGTGATAAATTCGATTCATCTACCTTTGCATTTTGGTCAAAAAGCCCTGTGGAC ATTGAGCCAAGGAGAATCAGATTGCAATCTAATAGTTACACCACTAACACACTTTTGGATACTGTCACTGCTGCAACCAT ACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGTTGAATCATTGAAAGCAAATGAACAGCCTGCAGACAGAAAGAAAG GCTTAGGCGATTGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCAGTCTCAAAA TGTACAGCATGTGGTGCTGATTTTGGGGCTTTTATTCGCAGGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAA ATGCACACATGGTAGGATTGCTCTAACTGCGGAGGAGAATGCTCAGCCAGTACGAGTTTGTGACCGTTGCATGGCAGAAG TTACTCAGAGGCTGAGTAGTGCTAAAGAGGCATCAAGTAAACCTGTTTTGCAGAGCCATGAGGATCTTGCCAGGAAACTT CAGGAGGAGCTGGAGAGAAATCGAAAATCATCAGGTTCCAAGTCTGATGGATCTGGAAGACGGATGAAGGAAGTTGCATG TCCTATCTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCAGGTTCGGAGACCATTGAGTGTGGAGTTTGCCAGCACC CATTTCTTGTGAGTTCCTATTGA
Protein sequence (LotjaGi1g1v0430400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQGDYSSAPYYQFPHLQNPNPIPSSNPNPSDPLPNPYASAPPFTPNYAAPSSDYPSSYPSYPPNPDPIPPTAPPSYPPQ SYNPPPYESIPSYQQPPYYPPYDQNYAPPPNPIPNSTSSLYNHGGSSLPPIPAYETPYENPVKSDYGGGGAYFDDRYGSF NRTRSDPGSDLYGKRHDGGGGDDGFGDGVYAYEGGKVEPYGARGTAPKSSTWSSFDDYGRSISVPSPKESSPASKIVKAV PKVDVQEDVRSAVQKFRVKMLAESVGQGTMDVLCQVSLDGIRMLDPNTNRILRIYSLENITRCDKFDSSTFAFWSKSPVD IEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPVESLKANEQPADRKKGLGDWMNLIKPANEEKDHWVPDEAVSK CTACGADFGAFIRRHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVCDRCMAEVTQRLSSAKEASSKPVLQSHEDLARKL QEELERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 180 | 180 | - | – | |
| PANTHER | 1 | 539 | 539 | 1.3E-211 | – | |
| MobiDBLite | 21 | 44 | 24 | - | – | |
| MobiDBLite | 57 | 115 | 59 | - | – | |
| Gene3D | 221 | 350 | 130 | 3.2E-5 | ||
| SUPERFAMILY | 250 | 318 | 69 | 6.89E-6 | – | |
| Gene3D | 381 | 460 | 80 | 1.6E-25 | ||
| SMART | 387 | 456 | 70 | 1.0E-29 | ||
| SUPERFAMILY | 390 | 464 | 75 | 1.63E-23 | ||
| Pfam | 391 | 455 | 65 | 8.1E-21 | ||
| ProSiteProfiles | 395 | 455 | 61 | 13.797 | ||
| Coils | 470 | 490 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0430400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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