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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0432000 |
| Transcript ID | LotjaGi1g1v0432000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G20300.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial; TrEMBL-Plants: tr|G7J5W4|G7J5W4_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0432000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92684878..92686972) extracted from Lotus japonicus Gifu genome v1.2.
GTCTAGAGTGTATTTTTGGAAATTAGGGAATATGGGATGGTGTTGTTAGATGTTAGGGTGGTGGTTTAGTTTTGCCCTTT AATCCAAACAGCTCTAACATAAAGAAAAAAGAAAAATTGAACCTAATACTCCGCCAACAACTCAGCCCTGCTTCAGTAAC CGGAGGAAATGAACTGCGACTGCGCCTTCCAGAACCAGTTGTTGCTGTCACTCTGAACTGAACTCAAAGCACGTTAATCA CCAACAACATAGTGTCATCCATGGCCTTCTTCGTCAAATCAAGTGTACGCTTGCACCGTTCCCTCTCACCCCTCTCACCC ACCACTTTCAAACTATACTCTTCTCCAGCTTCACCTCAACATGACCTCATCGCCGAAAAGTTCCACACAGCGATCAAAGA CCACCACCGCAAAAACCCTAACCCCGACGCCGCGCCACCCTCACCTACTCTCACAATCCCCGACCTCGCCCTCGAATTCT CTAGACTCTCCGCCGCCCACCCAATCTCCCCCTCCACCGCCCGCCGCGTCATCGAGAAATGCGGCGCCATCCGCCACGGG ATCCCCTTCTACCAGTCCCTCGCATTCTTCAACTGGGCCACCTCCCTAAAAAATTTCCCCTCCTCGCCTGAACCCTACAT CGAGATGCTCGACCTCGCCGGAAAGCTCCGACACTTCGACCTCGCGTGGCACCTCATCGATTCGATGAAGACCCGCGGCG TTGAGATAACGGCTGAGACGTTCTCCGTCCTCATCCGCCGCTACGTGAGAGCAGGATTGGCGGCGGAGGCGGTGCACGCT TTCAACCGGATGGAAGATTACGGTGTTGCCCCTGACAAGGTTGCGGTTTCAATTGTGGTTAGTAGCTTGTGTAGGAAGCG TAGAGCGGAAGAAGCTCAATCGTTTTTTGACAGTGTGAAGGACAGGTTTGAACCTGATGTGATATTGTACACTAGCTTAA TTCATGGGTGGTGCAGGGCTGGGAAGATAGAAAGAGCTGAAGAGATTTTCAAGGACATGAAAGATGCTGGAATTAAGCCT AATGTTCATACTTACAGCATTGTGATTGACTCACTGTGTAGATGCGGGCAAATCACGCGTGCTCATGATGTTTTCGCTGA GATGATTGATGCAGGTTGTAATCCGAATGCGGTTACTTTCAATAGTCTTATGCGGGTTCATGTCAAAGCTGGAAGGACTG AAAAGGTCTTACAGGTTTTCAATCAGATGAAGAGGTTCAATTGTGCTGCTGATACTATTGGCTATAATTTCCTGATTGAG TGTCATTGTAGGGATGAGAATCTTGAAGAGGCTGTGAAAGTTCTCAACTTGATGGTTAAGAAAGGGGTTGCTCCTAATTC ATCCACTTTCAATTCAATTTTCGGGTGCATAGCTAAGTTGCATGATGTGAATGGCGCTCATCGGATGTATGCTAAGATGA AGGAACTGAATTGCTTGCCCAACACATTGACTTATAATATACTGATGAGAATGTTTGCTGAGTCGAAATCTATTGACATG GTTCTGAAATTGAAGAAGGAAATGGATGAGAATCAAGTGGAGCCTAACGTGAACACTTACCGCATTTTGATTTTGATGTT CTGTGAAAAGGGGCACTGGAACAATGCCTACAAGTTGATGAAGGAGATGGTTGAAGAAAAAAGCCTAAAACCAAATCTGC AAGTTTATGAAAATGTTCTAGAGCTGCTGAGGAAGGCTGGACAGCTTAAAATGCATGAAGAGTTGGTGGAGAAGATGGTT GCCAGGGGATTTGTCTCTCGCCCTTTGTAGAAGCAGCTTCATCATTAACATCTATAAGCCAAATAAGAGAACTTTCTAGT AAGACTATAAAATGTTGGTATTATTTGCTAATTACTGTAAGTGATAGGAAATGAGGGTCTTATTATTTATTTTAAAAATT GTGTGCTTTATTCATTTTAGTTTTGAGGCTGGCATTAATTTTGTATCCTGATGATGAATGTTGGCTTTAGCTGATTAAGG TCCTGTATGAAGTTCTTTTTACTTGAACTTGATGGGATGATTTATAATTTTATTAATGGCAGAAATAGAAGTGTTCTTGA AGGAAATGGTTTGAG
CDS sequence (LotjaGi1g1v0432000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTCTTCGTCAAATCAAGTGTACGCTTGCACCGTTCCCTCTCACCCCTCTCACCCACCACTTTCAAACTATACTC TTCTCCAGCTTCACCTCAACATGACCTCATCGCCGAAAAGTTCCACACAGCGATCAAAGACCACCACCGCAAAAACCCTA ACCCCGACGCCGCGCCACCCTCACCTACTCTCACAATCCCCGACCTCGCCCTCGAATTCTCTAGACTCTCCGCCGCCCAC CCAATCTCCCCCTCCACCGCCCGCCGCGTCATCGAGAAATGCGGCGCCATCCGCCACGGGATCCCCTTCTACCAGTCCCT CGCATTCTTCAACTGGGCCACCTCCCTAAAAAATTTCCCCTCCTCGCCTGAACCCTACATCGAGATGCTCGACCTCGCCG GAAAGCTCCGACACTTCGACCTCGCGTGGCACCTCATCGATTCGATGAAGACCCGCGGCGTTGAGATAACGGCTGAGACG TTCTCCGTCCTCATCCGCCGCTACGTGAGAGCAGGATTGGCGGCGGAGGCGGTGCACGCTTTCAACCGGATGGAAGATTA CGGTGTTGCCCCTGACAAGGTTGCGGTTTCAATTGTGGTTAGTAGCTTGTGTAGGAAGCGTAGAGCGGAAGAAGCTCAAT CGTTTTTTGACAGTGTGAAGGACAGGTTTGAACCTGATGTGATATTGTACACTAGCTTAATTCATGGGTGGTGCAGGGCT GGGAAGATAGAAAGAGCTGAAGAGATTTTCAAGGACATGAAAGATGCTGGAATTAAGCCTAATGTTCATACTTACAGCAT TGTGATTGACTCACTGTGTAGATGCGGGCAAATCACGCGTGCTCATGATGTTTTCGCTGAGATGATTGATGCAGGTTGTA ATCCGAATGCGGTTACTTTCAATAGTCTTATGCGGGTTCATGTCAAAGCTGGAAGGACTGAAAAGGTCTTACAGGTTTTC AATCAGATGAAGAGGTTCAATTGTGCTGCTGATACTATTGGCTATAATTTCCTGATTGAGTGTCATTGTAGGGATGAGAA TCTTGAAGAGGCTGTGAAAGTTCTCAACTTGATGGTTAAGAAAGGGGTTGCTCCTAATTCATCCACTTTCAATTCAATTT TCGGGTGCATAGCTAAGTTGCATGATGTGAATGGCGCTCATCGGATGTATGCTAAGATGAAGGAACTGAATTGCTTGCCC AACACATTGACTTATAATATACTGATGAGAATGTTTGCTGAGTCGAAATCTATTGACATGGTTCTGAAATTGAAGAAGGA AATGGATGAGAATCAAGTGGAGCCTAACGTGAACACTTACCGCATTTTGATTTTGATGTTCTGTGAAAAGGGGCACTGGA ACAATGCCTACAAGTTGATGAAGGAGATGGTTGAAGAAAAAAGCCTAAAACCAAATCTGCAAGTTTATGAAAATGTTCTA GAGCTGCTGAGGAAGGCTGGACAGCTTAAAATGCATGAAGAGTTGGTGGAGAAGATGGTTGCCAGGGGATTTGTCTCTCG CCCTTTGTAG
Protein sequence (LotjaGi1g1v0432000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFFVKSSVRLHRSLSPLSPTTFKLYSSPASPQHDLIAEKFHTAIKDHHRKNPNPDAAPPSPTLTIPDLALEFSRLSAAH PISPSTARRVIEKCGAIRHGIPFYQSLAFFNWATSLKNFPSSPEPYIEMLDLAGKLRHFDLAWHLIDSMKTRGVEITAET FSVLIRRYVRAGLAAEAVHAFNRMEDYGVAPDKVAVSIVVSSLCRKRRAEEAQSFFDSVKDRFEPDVILYTSLIHGWCRA GKIERAEEIFKDMKDAGIKPNVHTYSIVIDSLCRCGQITRAHDVFAEMIDAGCNPNAVTFNSLMRVHVKAGRTEKVLQVF NQMKRFNCAADTIGYNFLIECHCRDENLEEAVKVLNLMVKKGVAPNSSTFNSIFGCIAKLHDVNGAHRMYAKMKELNCLP NTLTYNILMRMFAESKSIDMVLKLKKEMDENQVEPNVNTYRILILMFCEKGHWNNAYKLMKEMVEEKSLKPNLQVYENVL ELLRKAGQLKMHEELVEKMVARGFVSRPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 16 | 16 | - | – | |
| Gene3D | 103 | 220 | 118 | 1.6E-19 | ||
| ProSiteProfiles | 122 | 156 | 35 | 7.805 | ||
| PANTHER | 143 | 325 | 183 | 7.7E-98 | – | |
| PANTHER | 143 | 325 | 183 | 7.7E-98 | – | |
| ProSiteProfiles | 157 | 191 | 35 | 10.731 | ||
| SUPERFAMILY | 159 | 323 | 165 | 2.66E-5 | ||
| TIGRFAM | 160 | 192 | 33 | 9.8E-6 | ||
| Pfam | 160 | 189 | 30 | 9.3E-4 | ||
| ProSiteProfiles | 192 | 222 | 31 | 7.958 | ||
| Pfam | 195 | 221 | 27 | 0.13 | ||
| Gene3D | 221 | 289 | 69 | 1.9E-24 | ||
| PANTHER | 221 | 435 | 215 | 7.7E-98 | – | |
| PANTHER | 221 | 435 | 215 | 7.7E-98 | – | |
| Pfam | 225 | 274 | 50 | 8.9E-19 | ||
| ProSiteProfiles | 226 | 260 | 35 | 14.25 | ||
| TIGRFAM | 229 | 262 | 34 | 1.1E-10 | ||
| ProSiteProfiles | 261 | 295 | 35 | 12.891 | ||
| TIGRFAM | 263 | 297 | 35 | 4.1E-10 | ||
| Gene3D | 290 | 358 | 69 | 5.8E-18 | ||
| ProSiteProfiles | 296 | 330 | 35 | 11.477 | ||
| TIGRFAM | 298 | 331 | 34 | 1.9E-9 | ||
| Pfam | 298 | 328 | 31 | 1.7E-7 | ||
| Pfam | 331 | 376 | 46 | 8.7E-14 | ||
| ProSiteProfiles | 331 | 365 | 35 | 11.838 | ||
| TIGRFAM | 335 | 366 | 32 | 1.0E-7 | ||
| Gene3D | 359 | 430 | 72 | 3.9E-14 | ||
| ProSiteProfiles | 366 | 400 | 35 | 9.569 | ||
| TIGRFAM | 369 | 402 | 34 | 8.3E-5 | ||
| Pfam | 400 | 448 | 49 | 2.5E-11 | ||
| ProSiteProfiles | 401 | 435 | 35 | 10.315 | ||
| TIGRFAM | 404 | 437 | 34 | 1.4E-5 | ||
| PANTHER | 404 | 505 | 102 | 7.7E-98 | – | |
| PANTHER | 404 | 505 | 102 | 7.7E-98 | – | |
| Gene3D | 431 | 502 | 72 | 1.4E-14 | ||
| ProSiteProfiles | 436 | 471 | 36 | 9.602 | ||
| TIGRFAM | 439 | 472 | 34 | 3.4E-4 | ||
| ProSiteProfiles | 472 | 506 | 35 | 8.024 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0432000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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