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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0435500 |
| Transcript ID | LotjaGi1g1v0435500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G42310.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial; TrEMBL-Plants: tr|A0A072VDR6|A0A072VDR6_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0435500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92999805..93002898) extracted from Lotus japonicus Gifu genome v1.2.
TCTCACTGTGTGACTGGTTTCATGATAACATGTTGGCTCTGACACCACAACTTTCTACTCCACCCACTATCTTCCCTTCT TCAACCCACCACCTCAATTACTCCCCCATCCGCCTCCGCCACCACCTCTTCCATTTCCAACCACACGCCACCGTCTCCTC CGCCACACCCATCATCGTCGATGACGGCCCTGACGACATCCTCGCCCTCCAAAACCGCCGCTACGACTTCACCCCACTCC TCAACTTCCTCTCCAACTCCCCTTCCCCCGACCCCGACTCTCCCTCCCCCACCTCCCTCGACTCCACCGAGTTCCACCTC GCCGAGTCCTACCGCGCCGTCCCCGCTCCGCTCTGGCACGCTCTCCTCAAATCCCTCTGCTCCTCCACCTCTTCCTCCGC CTCCTCCATCACCCTAGCCTACGCCGTCGTTTCATGGCTCCAGAAGCACAACCTCTGCTTCTCCTACGAGCTTCTCTACT CCATCCTCATCCACGCTCTTGGCCGCTCCGAGAAGCTCTACGAAGCGTTCTTGCTCTCTCAGCGGCAAACGCTGACTCCT CTCACCTACAACGCCCTCATCGCCGCCTGTGCTCGCAACGGCGACCTCGAGAAAGCGCTCAACCTCATGTCCCGCATGCG CCGCGACGGTTTCCACCCAGATTTTGTCAACTACAGCTCCATCATCAGGTCCCTCACGCACTCCAACATAATCGATTCCC CCATTTTGCAGAAGCTATACAGGGAGATTGAGAGTGATAAGATTGAAGCTGATGCTCATCTTCTGAACGACATCATTCTA GGATTCTCCAAAGCCGGTGACCCGACTCGGGCAATGCACTTCCTCGCTGTGGCTCAGGGGAACGGGCTGAGTCCAAAATC AAGCACCCTTGTGGCTGTTATCCTTGCTTTGGGGAACTCCGGCCGGACCGCGGAGGCGGAGGCGCTGTTTGAGGAGATTA AGGAGAATGGGATGGAGCCTAGAACGAGGGCTTTCAATGCCCTGCTCAAAGGGTATGTGAAGACGGGCTCGCTGAGGGAT GCTGAGTTTGTGGTTTCTGAGATGGAGAGGAGTGGTGTTTTGCCTGATGAGCATACTTATAGCATGTTGGTGGATGCGTA TGCGCAAGCCGGAAGGTGGGAGAGTGCGAGGATCGTGTTGAAGGAGATGGAGGCGAGTAATTTGCCGCCTAATTCGTATG TTTATAGCAGAATCTTGGCGGGTTATCGCGACAAGGGGGAGTGGCAGAAATCGTTTCAGGTTTTGAAGGAGATGAAGAGT AATGGGGTGCAGCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGGAAGTTCAATTGTCTTGATCATGCTAT GGCAACGTTCGAGCGAATGTTGTCGGAGGAGATTCGACCCGATACGGTTACTTGGAACACGCTGATAGATTGTCATTGTA AGGCCGGGTACCATGATAGAGCAGAGGAGTTGTTTCAGGAAATGCAGCAGAAGGGATACTCCCCTTGTGTCTTGACTTAT AATATCATGATCAATTCTATGGGGGCACAGGAAAAGTGGGACCAAGTGAGTGATTTGTTAACTAGGATGCAGAGTCAGGG ATTGCTGCCGAATGCGGTAACGTTTACAACCCTTGTTGATGTGTATGGAAAGTCAGGAAGGTTTAATGACGCGTTAGAGT GCTTGGAGGTCTTGAAATCTATGGGATTCAAGCCAACTCCAACCATGTATAATGCCCTGATCAATGCATACGCGCAAAGG GTATGTAGGATGCTGTTTTGTGAGTTCTTTCACCATATGCCCCAGAAATTGTTTAATGCTTCAAATCCTAGTATAATTAA TCATGGATCCTTATATACCAATATGCTGATTGCATTATCCTAGTTTACAATTCTGTACCAAGTTACTCAATTGAACCATG ATAAATTCCCTGTCTGTACTTATTATGCATTGGGAATGGATCAAGCACTATGAACAGGTTCTTTTTCAAAAACCTTGAGA ACCATTCTGGTGCTGAGCTGACAGGCATCAAATGTATTTTTTCTGCTACGAAATTTCTGATTCCCTTGTTCTTTAATCTT CCTCCATTGAGAAACACATGGCACAAGCTATGGGACTAGACCAGAATGCACTAACTCAGATTTGATGAATGGATTGGTTA GGTAATGATTTTGGTATTATTTGACGTAATTTGGGCAGGGTCTGTCTGATCAAGCAGTAAACGCTTTCAGGAAGATGACA GCTGAGGGTCTAACACCCAGTCTTTTAGCTCTCAATTCATTGATCAATGCTTTTGGTGAAGATAGAAGGGATCCTGAGGC CTTTGCTGTGCTGCAGTACATGAAAGAAAATGTATGGCTTTTTTAGCATGTTTTTCTTTCTCTTTTATGGCTAAATGTTT TACATGTTAATAATTGTCTCTGGTAAAGTACTTAGGCATCTTTTCGCTCATATTAACTACAGGACTTGCAACCTGATGTA GTTACCTATACTACACTTATGAAAGCCTTGATTCGTGTTGACAAGTTCCACAAGGTACATTATATAATATTACTACTTTC AGCTTGTCTTCTGTGTTTTCATAAATAATCATAATCCTTCCGTCTTGCATGATGTACCCCACCAAGGGGAATTGTTGTAG GCTTTTTAGCACGCCCCCATTTTTAGAATTCCAAGTATTACCTTTTTCTGTAGATGTCGTTCATATTGGTATGTATTCCC CAAGCTATGGTGACTCACAGTAAACCAATCAATGGAAAATAATGATTTTTCAACTTAAAAATTGGCATGGATTTGGTCTT TTGCTGTGTTTTTTATATCTTAAGTATCATTCGCATTCCACATCATGCCTAATATGGATGATAGTGTGATTTTTCACGGA TGAAAAACAAGACTCCGGTGAAAGTTGTATATTTATTAGTTTATTTGTGACTTTAGGTCACTCAACTTCATTGCAAAACT ATGATGCATCATTTGGGTTTCAGGTCCCCGCTGTGTATGAAGAAATGGTTTCGTCTGGATGCACTCCAGATAGAAAGGCT AGAGCAATGCTGCGGTCTGCTCTTAGATACATGAGACAGACACTTAAATCATAA
CDS sequence (LotjaGi1g1v0435500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTCTGACACCACAACTTTCTACTCCACCCACTATCTTCCCTTCTTCAACCCACCACCTCAATTACTCCCCCAT CCGCCTCCGCCACCACCTCTTCCATTTCCAACCACACGCCACCGTCTCCTCCGCCACACCCATCATCGTCGATGACGGCC CTGACGACATCCTCGCCCTCCAAAACCGCCGCTACGACTTCACCCCACTCCTCAACTTCCTCTCCAACTCCCCTTCCCCC GACCCCGACTCTCCCTCCCCCACCTCCCTCGACTCCACCGAGTTCCACCTCGCCGAGTCCTACCGCGCCGTCCCCGCTCC GCTCTGGCACGCTCTCCTCAAATCCCTCTGCTCCTCCACCTCTTCCTCCGCCTCCTCCATCACCCTAGCCTACGCCGTCG TTTCATGGCTCCAGAAGCACAACCTCTGCTTCTCCTACGAGCTTCTCTACTCCATCCTCATCCACGCTCTTGGCCGCTCC GAGAAGCTCTACGAAGCGTTCTTGCTCTCTCAGCGGCAAACGCTGACTCCTCTCACCTACAACGCCCTCATCGCCGCCTG TGCTCGCAACGGCGACCTCGAGAAAGCGCTCAACCTCATGTCCCGCATGCGCCGCGACGGTTTCCACCCAGATTTTGTCA ACTACAGCTCCATCATCAGGTCCCTCACGCACTCCAACATAATCGATTCCCCCATTTTGCAGAAGCTATACAGGGAGATT GAGAGTGATAAGATTGAAGCTGATGCTCATCTTCTGAACGACATCATTCTAGGATTCTCCAAAGCCGGTGACCCGACTCG GGCAATGCACTTCCTCGCTGTGGCTCAGGGGAACGGGCTGAGTCCAAAATCAAGCACCCTTGTGGCTGTTATCCTTGCTT TGGGGAACTCCGGCCGGACCGCGGAGGCGGAGGCGCTGTTTGAGGAGATTAAGGAGAATGGGATGGAGCCTAGAACGAGG GCTTTCAATGCCCTGCTCAAAGGGTATGTGAAGACGGGCTCGCTGAGGGATGCTGAGTTTGTGGTTTCTGAGATGGAGAG GAGTGGTGTTTTGCCTGATGAGCATACTTATAGCATGTTGGTGGATGCGTATGCGCAAGCCGGAAGGTGGGAGAGTGCGA GGATCGTGTTGAAGGAGATGGAGGCGAGTAATTTGCCGCCTAATTCGTATGTTTATAGCAGAATCTTGGCGGGTTATCGC GACAAGGGGGAGTGGCAGAAATCGTTTCAGGTTTTGAAGGAGATGAAGAGTAATGGGGTGCAGCCTGATAGGCATTTTTA CAATGTGATGATTGATACTTTTGGGAAGTTCAATTGTCTTGATCATGCTATGGCAACGTTCGAGCGAATGTTGTCGGAGG AGATTCGACCCGATACGGTTACTTGGAACACGCTGATAGATTGTCATTGTAAGGCCGGGTACCATGATAGAGCAGAGGAG TTGTTTCAGGAAATGCAGCAGAAGGGATACTCCCCTTGTGTCTTGACTTATAATATCATGATCAATTCTATGGGGGCACA GGAAAAGTGGGACCAAGTGAGTGATTTGTTAACTAGGATGCAGAGTCAGGGATTGCTGCCGAATGCGGTAACGTTTACAA CCCTTGTTGATGTGTATGGAAAGTCAGGAAGGTTTAATGACGCGTTAGAGTGCTTGGAGGTCTTGAAATCTATGGGATTC AAGCCAACTCCAACCATGTATAATGCCCTGATCAATGCATACGCGCAAAGGGGTCTGTCTGATCAAGCAGTAAACGCTTT CAGGAAGATGACAGCTGAGGGTCTAACACCCAGTCTTTTAGCTCTCAATTCATTGATCAATGCTTTTGGTGAAGATAGAA GGGATCCTGAGGCCTTTGCTGTGCTGCAGTACATGAAAGAAAATGACTTGCAACCTGATGTAGTTACCTATACTACACTT ATGAAAGCCTTGATTCGTGTTGACAAGTTCCACAAGGTCCCCGCTGTGTATGAAGAAATGGTTTCGTCTGGATGCACTCC AGATAGAAAGGCTAGAGCAATGCTGCGGTCTGCTCTTAGATACATGAGACAGACACTTAAATCATAA
Protein sequence (LotjaGi1g1v0435500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLALTPQLSTPPTIFPSSTHHLNYSPIRLRHHLFHFQPHATVSSATPIIVDDGPDDILALQNRRYDFTPLLNFLSNSPSP DPDSPSPTSLDSTEFHLAESYRAVPAPLWHALLKSLCSSTSSSASSITLAYAVVSWLQKHNLCFSYELLYSILIHALGRS EKLYEAFLLSQRQTLTPLTYNALIAACARNGDLEKALNLMSRMRRDGFHPDFVNYSSIIRSLTHSNIIDSPILQKLYREI ESDKIEADAHLLNDIILGFSKAGDPTRAMHFLAVAQGNGLSPKSSTLVAVILALGNSGRTAEAEALFEEIKENGMEPRTR AFNALLKGYVKTGSLRDAEFVVSEMERSGVLPDEHTYSMLVDAYAQAGRWESARIVLKEMEASNLPPNSYVYSRILAGYR DKGEWQKSFQVLKEMKSNGVQPDRHFYNVMIDTFGKFNCLDHAMATFERMLSEEIRPDTVTWNTLIDCHCKAGYHDRAEE LFQEMQQKGYSPCVLTYNIMINSMGAQEKWDQVSDLLTRMQSQGLLPNAVTFTTLVDVYGKSGRFNDALECLEVLKSMGF KPTPTMYNALINAYAQRGLSDQAVNAFRKMTAEGLTPSLLALNSLINAFGEDRRDPEAFAVLQYMKENDLQPDVVTYTTL MKALIRVDKFHKVPAVYEEMVSSGCTPDRKARAMLRSALRYMRQTLKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 91 | 233 | 143 | 2.1E-17 | ||
| PANTHER | 150 | 347 | 198 | 4.6E-111 | – | |
| ProSiteProfiles | 176 | 210 | 35 | 13.373 | ||
| Pfam | 179 | 222 | 44 | 2.9E-10 | ||
| TIGRFAM | 179 | 211 | 33 | 5.2E-10 | ||
| ProSiteProfiles | 211 | 247 | 37 | 6.226 | ||
| Gene3D | 234 | 382 | 149 | 1.5E-35 | ||
| ProSiteProfiles | 248 | 282 | 35 | 8.265 | ||
| ProSiteProfiles | 283 | 317 | 35 | 10.095 | ||
| Pfam | 288 | 314 | 27 | 0.021 | ||
| TIGRFAM | 289 | 317 | 29 | 0.0012 | ||
| ProSiteProfiles | 318 | 352 | 35 | 11.159 | ||
| Pfam | 319 | 365 | 47 | 1.5E-10 | ||
| TIGRFAM | 321 | 354 | 34 | 8.9E-7 | ||
| PANTHER | 347 | 508 | 162 | 4.6E-111 | – | |
| ProSiteProfiles | 353 | 387 | 35 | 12.617 | ||
| TIGRFAM | 355 | 388 | 34 | 1.6E-6 | ||
| SUPERFAMILY | 363 | 629 | 267 | 2.01E-7 | – | |
| Pfam | 376 | 436 | 61 | 7.8E-10 | ||
| Gene3D | 383 | 452 | 70 | 5.1E-14 | ||
| ProSiteProfiles | 388 | 422 | 35 | 11.411 | ||
| TIGRFAM | 390 | 423 | 34 | 2.8E-5 | ||
| ProSiteProfiles | 423 | 457 | 35 | 10.337 | ||
| TIGRFAM | 427 | 459 | 33 | 9.6E-6 | ||
| Gene3D | 453 | 524 | 72 | 1.7E-20 | ||
| Pfam | 457 | 503 | 47 | 6.6E-16 | ||
| ProSiteProfiles | 458 | 492 | 35 | 14.787 | ||
| TIGRFAM | 460 | 492 | 33 | 6.7E-11 | ||
| ProSiteProfiles | 493 | 527 | 35 | 9.964 | ||
| PANTHER | 494 | 675 | 182 | 4.6E-111 | – | |
| TIGRFAM | 496 | 529 | 34 | 2.5E-6 | ||
| Pfam | 516 | 576 | 61 | 1.3E-8 | ||
| ProSiteProfiles | 528 | 562 | 35 | 11.849 | ||
| TIGRFAM | 530 | 563 | 34 | 7.6E-7 | ||
| Gene3D | 545 | 687 | 143 | 4.0E-30 | ||
| ProSiteProfiles | 563 | 597 | 35 | 11.641 | ||
| TIGRFAM | 566 | 598 | 33 | 5.7E-6 | ||
| ProSiteProfiles | 598 | 632 | 35 | 9.175 | ||
| Pfam | 600 | 645 | 46 | 1.8E-10 | ||
| TIGRFAM | 603 | 634 | 32 | 0.0011 | ||
| ProSiteProfiles | 633 | 667 | 35 | 11.674 | ||
| TIGRFAM | 635 | 668 | 34 | 1.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0435500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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