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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0437700 |
| Transcript ID | LotjaGi1g1v0437700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin-81 protein; TAIR: AT1G51740.1 syntaxin of plants 81; Swiss-Prot: sp|P59277|SYP81_ARATH Syntaxin-81; TrEMBL-Plants: tr|I3T4F4|I3T4F4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0437700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93253779..93257729) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAAAGCGAGAGACAGAACCGAAGATTTCAAAGATGCAGTGCGCCAGAGTGCTCGCTCTCTCGGCTACGATGAGGT AGGTGTATTATTCACTATCCCCAATTCATTTTCCTCCCAAATTACCACAATCTAGGTCAAAATTGTGTGATCCTCTGATT CGTTTTCCCATCACTTAGGCTAGTAGTAATGCTCACATTCTAGGTACTGAACGATAATTGAACAGGTGATGTCTCATTTT CTGGCTTCTGTGGTTGCAAACTAGTGCTCTACTTGGATCTTGCTTGCCATCTGCATTATGTGAGAGCAGTTTTGTTAATA GCTCATCGCGGAAAATAGCAGAAAGCCCAAAATCCTCTGTTTCAAGTCCTCATAGCGCCAAATAGCCGAATAGCGTTGAG CCCTCAGAGCGCTACGATATAGCGCCGCTATAACCGCTATTTGATATATTGTTATTTGACATCAAGCTTGTGAATTGGCA AAAAGTATTGTCATTTTTTAACCAAGCAGGTGGTGACATGGCAAACTTATAAAATGCTTAGTTAATATTTAAGAACTGTG GTGTACATGATATTCAGTAAAACTCGTAATCAGACACAACAGAAAAAGAAAACCCCTTTTTTTTGTGCAATTATCGTTAT GCTCCATTTGGTTTGGTTCTAGGAGGTATCAAGAAAAACAAACTGCAAACTTTCTATAAAAATTGTATTGGATTTTGATT ATTAAAATGTAAGTTTTTTTTCTTAGAAAGAAGGAAATTATGAACTATTTCTGAACATAGTTGTGCTGTTGTACCAAGTA ATGGTTCATCTCCTTGGGTTATTGTTAATCAATCAAACATACTCTGCTTCTTGGTGCTATTGCATAATGTGTGATTGGCA TTTTTAATGTGGTGTGTTGTGATTCTCTTGGCAGGCTAAGTTGGCTTCAATTTTGGCATCTTTCATCATTCATAAACCTC CGCAAAGGTCTCCATTTTACAAAGCTGCATTAAAGACGGTAAGCTCAGGTTTCATATTGTTATTTTTGGCCTTACCCTTA TAGACCTCTATGGGAGAATATATCATGTTTGAATCAACTTCTCTTTCCTTTTAATTCTGACACCCAAAAGCTACTCATAT AAGTTTCTCCCCATAATTGATTCTGTCTTTAGAATCAATTGTAGAAAGATTTTTAAACATGCACTAAATTAGTTTCTGCA TGATGTCCAATAAAACTGTTTGTACTTTGTGTTGAGTTTTATTTTTGCTCTTTCACTTAGCAATGGAAGTAGTGCTTGCT ACTTTTGAATAATATGTGTCTCATATTGCTTCTCCTTGTTATTTGCTTATAGCTTGAGAGTATTGGAGAATTGGAACAGT TTCTGTTGAAGCATAGAAAGGACTATACAGATCTTCACCGCACAACTGAACAAGAGAGAGATAGCATTGAGCAAGAAGTA AGCTATGTGACAATACCTGAGAGTTATACACTAATTTTGATAGCATTGCAGTATCTTAAATCTCAGTTAATAATTGAAAA ATAGTGATTGGTATTACATTTCTGGTCCGTGCTTTTGATTTATGGCAAAAGCTCGGTGTTCCATTTCATGTATTACTTAA TTTTACATTTGCTGCTGACATTGACGGTTTACAACTTTCTCACTACAATGTAATTCATAAGACAAATTTGTTTTCCAGAC CAGCCTATCATTTTGCTTGTGAAACCCCCGCCCCCTCTCTTTATATATGTTACTATATTCTGGTCTTTCTCAGGCTGATA TTAAGTTATGCCTTGACCGCTATCATTCTTATATCACATCGGTTCTCTCATTTCACCTCCCTCCTGAGGTCCCATAAATC TGTAAAAATTGAATAATGACATACTGCTTGTGCTTGCCGTTGTATCTGCTGACTGCTTCTGACATCAATTCTAGCTCACA TCAACATCTAAATACAACTCTTTAAGCCCTCTCTGTTATCAACATGATTTTCTGCCATTGTCGTATCAACTGCTTAGTCC ACCTACATATTGTCTCTTTAAGCTCTCTCTGTTATGGGGTGAACAGAATTGTTATCCTTTAATTGTTATATAAATTAGTT AAGCAGCCTTGAGAAGTTGTACAGAGTTTGCTTATGATTTACAATTATTATGTAATTAATTTGGTGCAGGTTAGTGCTTT TATTAAAACATGCCAAGAACAAATCGATGTTCTTAAGAATAGTATAAATAATGTAGAGGAAAATTCAAAAGGTTGGCTTG GTATTGCGACCGCAAAGGCTAATGCCGACACCATTGCCCACAAACATGGAGTGGTATGGACTTCTGCTTGTGCTTATTGA TTCTTTCAATTATTAGTGACCTGTGTGGGTCAAATTGTCATATCATTTTCTAATACCTTAAAACAGAAAAGCATTTGAAG CTATTTTCCCAAGTTATCAAAACATAAAAAATATTGTATTTCCTCTATAAGCCACTGGATAACAATTGGACCCTGCTCAA ACATTTTCTGAACAGTAAATATTTATCAACCAACCCTTCCTCCCCAAACACTGGCTATGAGACAATCATGATGCCTTATG CACGGCAATGCTTGATAAAGCTATTCTATTGAGCTCCTGGTTCCTCTAATGTTTTTTTACTTTTAGGTTCTAATTTTAAG TGAGAGACTCCATCCAGTTACAGCACAGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAATAGAGCGACAC CACGAAGAAAACTTAGTCGTGTGACCCGGAAAGATTCTACTGAATCAGGTGATATGGAGCTCAGAGAACCTGATGAGTTA CGCAGCGAGCCTTTAAGAGTCCAGCAGCAACTCTTGGATGATGAAACACGTGTCCTTCAGGTGATAAAAATGGATGCCCT TGCGAGTTTGTTTTGAATTTTTCTGTCATTTGTTTAATTGAAGGCTTTTAGATTCTCATAGGGAGCACTTTGCCAATGTT CCTTTTCCCGTAGGTTGAATTGACTAATCTTCTAGACACAGTCCAAGAAACTGAAACGAAGATGGTGGAAATGTCTGCAT TAAATCACCTCATGTCTACACATGTTCTGCAGCAAGCTCATCAAATTGAGTATCTGTATGAGCAGGTTAGATAACATATC ATTCATACTTTTCACCCATGCTCTCCCTTTTTTATTTTGTGAGCCTTTTAAGGCTGTTATCTCTCTATGTTGGAAGAAAG TTAGAGACAAGAGGGAGAAAACAAGAGTAGAGCATGGAGAAATAGATTACATTGGGAGAAGCAGAACAGTGATACTTGAT TCATTAATTGAAAGCTTAAAACTGCCAAACCTACTTGATAACCCAGTAACCTAAAATGACTGAAAACCTGAATTAAATTT ATTAAAAACACCCTAACCAACATGCTTATATTTCTATAATTCTAATATCCATATTCTATATATTAGTTCATACAATGAAG TCATAATATGCTTCACATGTTTCGGCAATAGTGATGCTCTGGTCTATTTGTTTGTCCAACACAAAAGTAAAATAAGGTGC ATTTCCATTTTCTGAGAAATGTAATAGTTCTTTTGCTACCTTTTACAGGCTGTTGAAGCTACTAAGAATGTAGAGTTTGG TAACAAAGAACTATCACAAGCCATTCAGCGTAATAGCAGCAGCAGGACATTTCTTTTACTCTTTCTATTTGTGCTTACTT TTTCGATCATCTTTCTTGATTGGTATAGTTAAGTGTTTCCGCCTTTCCGGTTTGCTTCTAACGATGTATATCCCGTTTTT ACCTATTACTGTTAATAACTGTTTTACCGCTTGGAAAGCATTTTTTCTTTAATACCACACACTGTTATTTAGTCGAGAGG GAGAAATGTGGAGACATAAACTCAAATGTTAACGAAGTTCCTCGCCCTTACACACTAGCATGATCACATCTTTTGGAGTA AGTAGTATTTGAGGATCTCAACTTTTTATGA
CDS sequence (LotjaGi1g1v0437700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAAGCGAGAGACAGAACCGAAGATTTCAAAGATGCAGTGCGCCAGAGTGCTCGCTCTCTCGGCTACGATGAGGC TAAGTTGGCTTCAATTTTGGCATCTTTCATCATTCATAAACCTCCGCAAAGGTCTCCATTTTACAAAGCTGCATTAAAGA CGCTTGAGAGTATTGGAGAATTGGAACAGTTTCTGTTGAAGCATAGAAAGGACTATACAGATCTTCACCGCACAACTGAA CAAGAGAGAGATAGCATTGAGCAAGAAGTTAGTGCTTTTATTAAAACATGCCAAGAACAAATCGATGTTCTTAAGAATAG TATAAATAATGTAGAGGAAAATTCAAAAGGTTGGCTTGGTATTGCGACCGCAAAGGCTAATGCCGACACCATTGCCCACA AACATGGAGTGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAATAGAGCGACACCACGAAGAAAACTTAGT CGTGTGACCCGGAAAGATTCTACTGAATCAGGTGATATGGAGCTCAGAGAACCTGATGAGTTACGCAGCGAGCCTTTAAG AGTCCAGCAGCAACTCTTGGATGATGAAACACGTGTCCTTCAGGTTGAATTGACTAATCTTCTAGACACAGTCCAAGAAA CTGAAACGAAGATGGTGGAAATGTCTGCATTAAATCACCTCATGTCTACACATGTTCTGCAGCAAGCTCATCAAATTGAG TATCTGTATGAGCAGGCTGTTGAAGCTACTAAGAATGTAGAGTTTGGTAACAAAGAACTATCACAAGCCATTCAGCGTAA TAGCAGCAGCAGGACATTTCTTTTACTCTTTCTATTTGTGCTTACTTTTTCGATCATCTTTCTTGATTGGTATAGTTAA
Protein sequence (LotjaGi1g1v0437700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGELEQFLLKHRKDYTDLHRTTE QERDSIEQEVSAFIKTCQEQIDVLKNSINNVEENSKGWLGIATAKANADTIAHKHGVFDQLRAVRFQDAINRATPRRKLS RVTRKDSTESGDMELREPDELRSEPLRVQQQLLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMSTHVLQQAHQIE YLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 272 | 272 | - | – | |
| PANTHER | 4 | 292 | 289 | 1.3E-96 | – | |
| PANTHER | 4 | 292 | 289 | 1.3E-96 | – | |
| Pfam | 5 | 86 | 82 | 1.5E-16 | ||
| SUPERFAMILY | 46 | 117 | 72 | 5.89E-6 | ||
| Coils | 69 | 89 | 21 | - | – | |
| Coils | 94 | 114 | 21 | - | – | |
| MobiDBLite | 156 | 180 | 25 | - | – | |
| Gene3D | 199 | 290 | 92 | 8.3E-6 | – | |
| SUPERFAMILY | 208 | 264 | 57 | 6.54E-5 | – | |
| TMHMM | 272 | 291 | 20 | - | – | |
| Phobius | 273 | 291 | 19 | - | – | |
| Phobius | 292 | 292 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0437700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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