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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0437800 |
| Transcript ID | LotjaGi1g1v0437800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G09060.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060; TrEMBL-Plants: tr|A0A1J7HM62|A0A1J7HM62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0437800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93263010..93267542) extracted from Lotus japonicus Gifu genome v1.2.
AGCTTTGATGGTACTACCATTTAACCTAGTTTCGCCACCTATAACCGTTCGTAATAACATCAGTACTTGTGAACTGTGAT GCCGGCGTCAACTCCGGCATTGTCGTCCATTCCATGGTGGACCTCCCCAAACCCCTCTCTCCCCACCGTCTTCTCAACCT ACTCAAGTCCGAGAAGAACCCCCACTCCGCCCTCCAACTCTTTCAACACGCCACGCGCCACCCCGGCTACACCCACTCCT CCGCCGTCCTCCAACACGTCCTCCGCCGCGTCGCATCCGACCCCACCCTCCTCCCCCACGCGCCCCACATCATCGGCGCC ATTGAGGCCGCCCAGAACTGCAACTGCTCCGAAGACGTTCCCCTCACCCTCCTCAAAGCCTACGCCAAACGCTCCATGCC CGATGAAGCTCTCAACCTTTTCAGAAAAATGGATCGGGTCTTCGGGTGCCGACCCGGTGTAAGGTCCTTCAACTCGCTCC TCAACGCGTTCGCGGTATCGGAGCAGTGGGAACGCGCTGAGAAGTTCTTCGCGTACTTCGACACCGCCGGTGTGTCGCCG AACGTTGAAACGTACAATGTTCTGATAAAGGTGCTGTGTAAGAAGAGGGAGTTCGAGAAGGCGAAGGGGCTGCTGAGGTG GATGTCGGGTGTGGGATTGAGGCCTGATAAGTTCAGCTATGGGACATTGATCAATGCGGCGGCGAAAAGGGGTGATTTGA ATGCTGCATTGGAGGTGTTTGATGAAATGTCTGAACGAGGGGTGGAGCCTGATGTCATGTGTTATAACATGATCATTGAT GGGTTTTTTAAAAGTGGAGATTTTTTGAAGGCTAATGAGATGTGGGAGAGGTTGTTGAGGGAGGAAACTGTTTTTCCTAA TGTTGTGAGTTATAATGTTATGATTAGAGGGTTGTCTAGGTGTGGGAGGTTTAGTGAGAGTTTGGAGATATGGGAGAGGA TGAAGAAGAATGAGAGGAAGCATGATGTTTTTACGTATAGTTCTCTGATTCATGGATTGAGTCAGATGGGGAACTTAGAT GGAGCTCAAAGGGTTTATAAGGATATGATTGGGAGAAGGGTCAGCCCTGATGTTGTAACTTGTAATGCGATGCTTAATGG ATTGTGTAAATGGGGGAAGGTTGAGGAAAGTTTTGAGTTGTGGGAGGAGATGGGGCAGTCTGGTTCCCGTAATGTAATTA GTTACAACATATTTATCAAGGGGTTGTTTGAAAATGGGAAGGTGGAAGAAGCAATGAATATATGGGAACTCTTGTTGGGT GAGACAGCACTTGCGGTAGATTCCACTACTTATGGAATATTGATTCATGGTTTGTGTAAGAATGGGTATCTGAATAAGGC TTTGCAGGTGCTGGAAGAGGCTGAACATAGGGGTGGTGATGTCGATGTCTTTGCATACTCCTCGATGATAAATGCTTTGT GCAAAGAAAGGAGATTAGATGATGCAGCTGGAGTTGTAAGTTTGATGGATAAGCGAGGCTGTAAATTGAACACTCATGTC TGCAATCCACTGATTGATGGGTTTATTAAAAATTCCAAACTTGACTCTGCTATTCAAGTCTTTAGGGAAATGAGCAACAA AGGTTCTTCACCAACTGTAGTGTCTTATAATATTCTCATAAATGGATTATGTAGAGCAGAAAGATTTCATGAGGCATATC ATTGCGTCAAGGAAATGTTGGAGAAAGGGTTGAAGCCTGATATTGTCACGTACAGCACGTTGATAGATGGTCTTTGTCAA AGCAAGATGTTTGAGAGTGACACGGGCCTTAGATTGTGGCATCAGTTTCTGGACATGGGCTTTGAGCCTGATATAACTAT GTATAACATTGTAATTCATAGACTTTGTTCTTCTGGCAAAGTGGAGTATGCTCTGCAGCTCTATTCCATGCTGAGACAGA GGAGCTTTGTTAATCTTGTGACCCACAATACCATCATGGAGGGTTTTTACAAAGTTGGGGACTGCCAGAAGGCATCAAAG ATTTGGGCTCTTATTGTAAAATATGGAATAAAACCCGACATCATCTCTTATAATATTACTCTTAAGGGACTCTGCTCTTG TGGTAGAGTGACTGACGCAATTAGGTTTCTAGATCATGCTTTGGTGCATGGTGTTCTGCCAACTGCCATTACATGGAACA TACTAGTTAGAGCAGTGATTTTTTGTGGGGCTTCAACTGATTCTCTTGGGGCCTCAGATAGAATACATTAATTTTTACAG CACTATTTTTTCCCGAGTTGTGGACATCAATGCAGGAATTATATCAACATACGAGCATTGTGGTAGTTTCCCACCTGATC CAAGGATTAGTGATAAGTTTTGGTTTGAGCCCTAGCAGCATTTGATAGCGTTACCGTTAGGTACTTTGCTACAATACAGC TTGGAGCTGCCTTGAGGGATAGTGCCTACAATTTGATTTGTCTGAACAAAAAAGGTCATGTGTTTTGGTTTGTGGGATAT TTAACTGCCTCAGGCTTTACATGAATTGGTTGCTTTCTTCAGGGCCTTGGGATTTTCAGGCAGCAATTACTAGACTTCTC TATTTGATACACCAACTTGTTAAGCTGTACAGAAGGAATTACCCTGTATAATTATTAGCTTCTCATTACTTGTTTATATG ATTGGAGATAGGTAGATAAAAGTTAGCTTCTGAATATACATTTCTAAAATCTATAACATAGGATGTCACGAATTTCATCA GCATCACATGGTAATCCAATTACTCAGATTTTGGTGATTGTAGTAATATCACTGAGGCTGTTGTTGATGCCAAAACAAAG CAGCATGATGATATCAGTCCCAAGTTGTAAGCCTATACTTGGGGTTATTACATCATGCAATATGTATAAAAAACTATACT CCCGAGAAACTTGTTCTGTGATTCCCAGTAGAAATTGTACTTCAGTTATTTTTCTCTTCCCTGTTAGTCTTTCTTGTTGT TCCAGTTTCTGATGACATGTTTGTTTCATAGATGAACTGAGAAGTCAAAGCCACCACAATAGCTCCAAGAATTGCTACTT TTCTCCAATCAGCTAATGATGAGGCAATAGAATCCACTATTAGAAAGGTCAGCAGGCCAATGAAGACAAGGTAAATGCTT TTCCTGGTTCTGCTACTAGCCTTTTTTCTAGTTAAATCTTTGATTTTTTCGGTCTCCTCCTTGGCTTTTGCTTTATCAAC AGGTATCTTCTTTTTCAGGTTCTTAAAGAATAGCCCTTCGTTTCTGCCGTCTTCCATTTGAACTTCAAACTCCTCTAGTT CAATTTCCCGCTTCTGAATCTCTTGTCTGTTAACTTCTGCAGATTCCTCGAATTCTAGCATCTGGCTCTCAATGTTTGCT GTTATCTGTGAACACAAGTGAATAAAGGGGTCATTATTGGAGTACCTTATTGTCACTCATGGTGTGCAATGGTTTACATG GTTAACTCAAAAGCAAAACATACCCTGGCACCAGCTTCGTCTAATCCTTTGAGGGCATCATCTTCAATCTTGTTGAACTC AGCGTTTGCTTTTTCACCAAACCGGGTTAAATAGGCAGATTTCTCATCTATATAATCTACCAGACGGAATTTTTGAGCTT CAAGCATGACAATTTGGGCTAGCAGTTCTTGTTTACGAATGTCTCCAGGTTGGGGAGATTGAGAGTCCGACTCATTGGAC TTGCATAGGCACAGAATAGAACCTCTTGCGTTGAGGATTCTTGTGCAGTGGATGTTATTCTTGATGTTGCTAGGTTTGAA GGAAGGATGAATGGATTTAAGAGCAATCATCTTTTCATAACCGGAGAAGTATATGCATGGAAGGGTGAATGAAAAAATAG TATAACGCGAGAAAGAGGGTGCTGCAGGACCCAGATTCTTTGAAGTTTGAAGGCACAAGACAAAGATGTTCCTATCCTTA TTTTTCATAAGATAATGCCCACGAAACGAGGGGTTCAAAACACTTCCAGCCAACACACTTGAAAGGGAAAGCAGAAACCT ATTAGTTTGTTTGGGAAAACATGTTCAGCGCCCAATTCCTAAAGAAAACTTGCTCATCTTTTATTTATTTATTAAATTAC TCTTGTAATTTCAGTTTAGGTGTGGTGAAGACTAAAGGTCTCTCCAAGAGTGCGATTCTTAGGAACCAAACTACCAAACA TTCAACCTAGGGTCTCTCATCCTTTTTTTTGGGGTTAAGTTATGAGTGTTTGGATTAATTTGTTTTGGTAAAATTGATTA TGCTAAAATTGAAAATGAAGGTGATTTTGGGTTTGATTGGGACATTGTCAATCTCCTGTGTAGTGCTATTTGGAGCTCAT TGTGGTCACACAACCCAAAAGTTTAGGAATTATTTTTATGGGATATATGTGTAGTGAGTATTGTCATAGAAGAGTAGAAA GTCAAAATCTTAGATTTTTCATTTCATATTCCTAAAACTGTCTTATTATAAATTACGAATTTTTATCCAACCCCTTTGTT ACCCATTGTTGATGTTGATATTCAGATTTACTGGAAGTCACTACTATTTTTTC
CDS sequence (LotjaGi1g1v0437800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGACCTCCCCAAACCCCTCTCTCCCCACCGTCTTCTCAACCTACTCAAGTCCGAGAAGAACCCCCACTCCGCCCT CCAACTCTTTCAACACGCCACGCGCCACCCCGGCTACACCCACTCCTCCGCCGTCCTCCAACACGTCCTCCGCCGCGTCG CATCCGACCCCACCCTCCTCCCCCACGCGCCCCACATCATCGGCGCCATTGAGGCCGCCCAGAACTGCAACTGCTCCGAA GACGTTCCCCTCACCCTCCTCAAAGCCTACGCCAAACGCTCCATGCCCGATGAAGCTCTCAACCTTTTCAGAAAAATGGA TCGGGTCTTCGGGTGCCGACCCGGTGTAAGGTCCTTCAACTCGCTCCTCAACGCGTTCGCGGTATCGGAGCAGTGGGAAC GCGCTGAGAAGTTCTTCGCGTACTTCGACACCGCCGGTGTGTCGCCGAACGTTGAAACGTACAATGTTCTGATAAAGGTG CTGTGTAAGAAGAGGGAGTTCGAGAAGGCGAAGGGGCTGCTGAGGTGGATGTCGGGTGTGGGATTGAGGCCTGATAAGTT CAGCTATGGGACATTGATCAATGCGGCGGCGAAAAGGGGTGATTTGAATGCTGCATTGGAGGTGTTTGATGAAATGTCTG AACGAGGGGTGGAGCCTGATGTCATGTGTTATAACATGATCATTGATGGGTTTTTTAAAAGTGGAGATTTTTTGAAGGCT AATGAGATGTGGGAGAGGTTGTTGAGGGAGGAAACTGTTTTTCCTAATGTTGTGAGTTATAATGTTATGATTAGAGGGTT GTCTAGGTGTGGGAGGTTTAGTGAGAGTTTGGAGATATGGGAGAGGATGAAGAAGAATGAGAGGAAGCATGATGTTTTTA CGTATAGTTCTCTGATTCATGGATTGAGTCAGATGGGGAACTTAGATGGAGCTCAAAGGGTTTATAAGGATATGATTGGG AGAAGGGTCAGCCCTGATGTTGTAACTTGTAATGCGATGCTTAATGGATTGTGTAAATGGGGGAAGGTTGAGGAAAGTTT TGAGTTGTGGGAGGAGATGGGGCAGTCTGGTTCCCGTAATGTAATTAGTTACAACATATTTATCAAGGGGTTGTTTGAAA ATGGGAAGGTGGAAGAAGCAATGAATATATGGGAACTCTTGTTGGGTGAGACAGCACTTGCGGTAGATTCCACTACTTAT GGAATATTGATTCATGGTTTGTGTAAGAATGGGTATCTGAATAAGGCTTTGCAGGTGCTGGAAGAGGCTGAACATAGGGG TGGTGATGTCGATGTCTTTGCATACTCCTCGATGATAAATGCTTTGTGCAAAGAAAGGAGATTAGATGATGCAGCTGGAG TTGTAAGTTTGATGGATAAGCGAGGCTGTAAATTGAACACTCATGTCTGCAATCCACTGATTGATGGGTTTATTAAAAAT TCCAAACTTGACTCTGCTATTCAAGTCTTTAGGGAAATGAGCAACAAAGGTTCTTCACCAACTGTAGTGTCTTATAATAT TCTCATAAATGGATTATGTAGAGCAGAAAGATTTCATGAGGCATATCATTGCGTCAAGGAAATGTTGGAGAAAGGGTTGA AGCCTGATATTGTCACGTACAGCACGTTGATAGATGGTCTTTGTCAAAGCAAGATGTTTGAGAGTGACACGGGCCTTAGA TTGTGGCATCAGTTTCTGGACATGGGCTTTGAGCCTGATATAACTATGTATAACATTGTAATTCATAGACTTTGTTCTTC TGGCAAAGTGGAGTATGCTCTGCAGCTCTATTCCATGCTGAGACAGAGGAGCTTTGTTAATCTTGTGACCCACAATACCA TCATGGAGGGTTTTTACAAAGTTGGGGACTGCCAGAAGGCATCAAAGATTTGGGCTCTTATTGTAAAATATGGAATAAAA CCCGACATCATCTCTTATAATATTACTCTTAAGGGACTCTGCTCTTGTGGTAGAGTGACTGACGCAATTAGGTTTCTAGA TCATGCTTTGGTGCATGGTGTTCTGCCAACTGCCATTACATGGAACATACTAGTTAGAGCAGTGATTTTTTGTGGGGCTT CAACTGATTCTCTTGGGGCCTCAGATAGAATACATTAA
Protein sequence (LotjaGi1g1v0437800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDLPKPLSPHRLLNLLKSEKNPHSALQLFQHATRHPGYTHSSAVLQHVLRRVASDPTLLPHAPHIIGAIEAAQNCNCSE DVPLTLLKAYAKRSMPDEALNLFRKMDRVFGCRPGVRSFNSLLNAFAVSEQWERAEKFFAYFDTAGVSPNVETYNVLIKV LCKKREFEKAKGLLRWMSGVGLRPDKFSYGTLINAAAKRGDLNAALEVFDEMSERGVEPDVMCYNMIIDGFFKSGDFLKA NEMWERLLREETVFPNVVSYNVMIRGLSRCGRFSESLEIWERMKKNERKHDVFTYSSLIHGLSQMGNLDGAQRVYKDMIG RRVSPDVVTCNAMLNGLCKWGKVEESFELWEEMGQSGSRNVISYNIFIKGLFENGKVEEAMNIWELLLGETALAVDSTTY GILIHGLCKNGYLNKALQVLEEAEHRGGDVDVFAYSSMINALCKERRLDDAAGVVSLMDKRGCKLNTHVCNPLIDGFIKN SKLDSAIQVFREMSNKGSSPTVVSYNILINGLCRAERFHEAYHCVKEMLEKGLKPDIVTYSTLIDGLCQSKMFESDTGLR LWHQFLDMGFEPDITMYNIVIHRLCSSGKVEYALQLYSMLRQRSFVNLVTHNTIMEGFYKVGDCQKASKIWALIVKYGIK PDIISYNITLKGLCSCGRVTDAIRFLDHALVHGVLPTAITWNILVRAVIFCGASTDSLGASDRIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 163 | 150 | 3.1E-174 | – | |
| PANTHER | 14 | 163 | 150 | 3.1E-174 | – | |
| ProSiteProfiles | 79 | 114 | 36 | 7.322 | ||
| Gene3D | 84 | 249 | 166 | 2.2E-46 | ||
| Pfam | 85 | 107 | 23 | 0.0014 | ||
| TIGRFAM | 85 | 115 | 31 | 7.7E-5 | ||
| ProSiteProfiles | 115 | 149 | 35 | 9.186 | ||
| Pfam | 118 | 139 | 22 | 0.14 | ||
| PANTHER | 145 | 285 | 141 | 3.1E-174 | – | |
| PANTHER | 145 | 285 | 141 | 3.1E-174 | – | |
| Pfam | 149 | 197 | 49 | 3.2E-12 | ||
| ProSiteProfiles | 150 | 184 | 35 | 11.816 | ||
| TIGRFAM | 153 | 185 | 33 | 1.3E-5 | ||
| ProSiteProfiles | 185 | 219 | 35 | 13.055 | ||
| TIGRFAM | 187 | 221 | 35 | 8.6E-10 | ||
| SUPERFAMILY | 194 | 428 | 235 | 6.8E-9 | – | |
| Pfam | 215 | 245 | 31 | 1.2E-6 | ||
| ProSiteProfiles | 220 | 255 | 36 | 9.536 | ||
| TIGRFAM | 223 | 256 | 34 | 1.4E-5 | ||
| PANTHER | 247 | 384 | 138 | 3.1E-174 | – | |
| PANTHER | 247 | 384 | 138 | 3.1E-174 | – | |
| Gene3D | 250 | 356 | 107 | 5.3E-32 | ||
| Pfam | 255 | 303 | 49 | 2.8E-14 | ||
| ProSiteProfiles | 256 | 290 | 35 | 11.904 | ||
| TIGRFAM | 258 | 287 | 30 | 1.9E-7 | ||
| ProSiteProfiles | 291 | 325 | 35 | 12.288 | ||
| TIGRFAM | 293 | 327 | 35 | 1.4E-6 | ||
| Pfam | 323 | 353 | 31 | 4.7E-10 | ||
| ProSiteProfiles | 326 | 360 | 35 | 12.255 | ||
| TIGRFAM | 328 | 357 | 30 | 2.8E-8 | ||
| Gene3D | 357 | 426 | 70 | 3.6E-16 | ||
| Pfam | 359 | 384 | 26 | 9.4E-6 | ||
| PANTHER | 360 | 455 | 96 | 3.1E-174 | – | |
| PANTHER | 360 | 455 | 96 | 3.1E-174 | – | |
| ProSiteProfiles | 361 | 390 | 30 | 6.259 | ||
| TIGRFAM | 362 | 387 | 26 | 1.2E-4 | ||
| PANTHER | 392 | 556 | 165 | 3.1E-174 | – | |
| PANTHER | 392 | 556 | 165 | 3.1E-174 | – | |
| ProSiteProfiles | 396 | 430 | 35 | 10.786 | ||
| Pfam | 396 | 444 | 49 | 3.1E-11 | ||
| TIGRFAM | 399 | 427 | 29 | 4.9E-6 | ||
| Gene3D | 427 | 495 | 69 | 5.8E-17 | ||
| ProSiteProfiles | 431 | 465 | 35 | 11.762 | ||
| PANTHER | 431 | 604 | 174 | 3.1E-174 | – | |
| PANTHER | 431 | 604 | 174 | 3.1E-174 | – | |
| TIGRFAM | 434 | 467 | 34 | 2.9E-8 | ||
| Pfam | 461 | 494 | 34 | 2.1E-6 | ||
| ProSiteProfiles | 466 | 500 | 35 | 11.564 | ||
| TIGRFAM | 469 | 501 | 33 | 5.5E-7 | ||
| SUPERFAMILY | 479 | 672 | 194 | 8.11E-5 | – | |
| Gene3D | 496 | 557 | 62 | 7.2E-20 | ||
| Pfam | 500 | 549 | 50 | 5.4E-19 | ||
| ProSiteProfiles | 501 | 535 | 35 | 13.208 | ||
| TIGRFAM | 503 | 537 | 35 | 5.3E-11 | ||
| ProSiteProfiles | 536 | 572 | 37 | 11.257 | ||
| TIGRFAM | 538 | 574 | 37 | 1.3E-5 | ||
| Gene3D | 558 | 704 | 147 | 3.3E-28 | ||
| PANTHER | 560 | 686 | 127 | 3.1E-174 | – | |
| PANTHER | 560 | 686 | 127 | 3.1E-174 | – | |
| Pfam | 568 | 597 | 30 | 1.4E-6 | ||
| ProSiteProfiles | 573 | 603 | 31 | 9.295 | ||
| TIGRFAM | 576 | 605 | 30 | 1.7E-4 | ||
| Pfam | 607 | 655 | 49 | 1.7E-10 | ||
| ProSiteProfiles | 607 | 641 | 35 | 10.019 | ||
| TIGRFAM | 609 | 643 | 35 | 3.4E-5 | ||
| ProSiteProfiles | 642 | 676 | 35 | 10.6 | ||
| TIGRFAM | 644 | 677 | 34 | 0.0031 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0437800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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