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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0438200 |
| Transcript ID | LotjaGi1g1v0438200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT2G38090.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A072U1U5|A0A072U1U5_MEDTR MYB transcription factor MYB51; Found in the gene: LotjaGi1g1v0438200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93291087..93294260) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAAGAGAGGTGTGTAAGTAACATTACTGCTCCCACAAACATCACCTGCACCAATCACAACTGAGCCCCTTTGACCTC TCTCACTTTCATTCTCTCTCTCCCTGTTCTTCTGGTTCCATAGATCGCTGTCTTTCAATCACTACAAACTGCTTACACAT TTCTGTTCACTCCTTCCTTCTACTCCTTTACACTGCACTGCTCCTTTCACCCCACCACTTTTACTTCAAATTGTTCTTAT AGTTGATGGCTTTTTGCTTTTATCAATTCCCCACTTCACTCATCTTTGTTCTGTCAAGATACTAGTAGCACCTTTCAATT TTTTCACGTTCAGGGGTTGGCTGAAACCTCTGCATATTTTGTAAATTTTGGTGTTTTTTATCTTTTCTATTACCCTTTTG TTTGATGCGTTACTAATTATTATTTCTTCTCCTCCTAGATCTTAATAGTTTATAAAGATTCATACTTTGCATATCATATG TTAAATTTTGGAATTTTCCTTGGGTTTTGGAAAGGAACCCTTATCTAGATTCCAGAGTTTTGTGGATACCTGAAATGGGT AGCAGATTCCTTCCAAGTGTTTGATTATATGCTTCTTTGGGCATAAGAAGCTCCACTCCTCTGCATTTCTTCTGTGTCTT GTCTCTCTCTCTCTCTTTCGTTGAACTTATCTTTGACAGAGAGAGGGGGAGAGAGTTAATTTTGTAATATTTGTTCACAT GCTTGGTGTGTTTTGAATTCTTATCAAGAACAATGAATAGGGGAGTTGAAGTTCTCTCTCCAGCCTCCTATCTCCACAAT TCCAATTGGTTGTTCCAGGAAAGTAAAGGAGCCAAATGGACTCCACAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTA TTTCGATAAGGACACCCCGGATCGATGGTTGAGGGTGGCATCGATGATTCCAGGGAAAACTGTGGGTGATGTGATCAAAC AGTACAAGGAACTTGAAGAGGATGTGTGTGTCATTGAAGCAGGTTTGGTCCCAGTTCCTGGGTATGGTGCTGATTCTTTC ACATTGGAGTGGGCTAACAATCATCAGGGCTATGATATTGATGATGGGTTCAAGCAATTTTATAGTGTTGGTGGGAAAAG GGGTGCATCATGTACTCGGCCATCTGAACAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAACACAGGTAATTAA TTGCATATCATATTTCCTTTTTCATTGATATTGTTTTTTCCACAGTGGTCCCTTTTTGGATCAATGATCAAGTTTCTGGG TGATTCAAATAATGGAGGAAGAATCATTAGTTAGTTGGGATGTTAAAAGCTTTGCAATTAGGATGTTTCTTTATAGGTTT TAACTTTTCAGCTTTGGATTGTTGATTTACGTAGTTGGTTGGATGTTTAAAATCAGGCTGTGCTCATGTTTTTCCTGGAC AATATATTGTTTAAGGCAACAACACGGTTAATAATCTCATAAAATTTGGGTTTTGATTGAGCACAATGACGTCGGGTGAT CGATCCATCTAATTGACTTCACTTAGTGAGATAAACTTTTGTTGTAGCTGTATATGTACCGTTCCTTCGGTAGTGGTCCC TTTTTTTATCAATGACAAAATTTATGGGATAATCATTAGTTAGCTAGGATGTTAAAAATCTTAGTATTTTAGATGTTTCT TTGTAGATTTTCTCTTTCCAGCTTTGAATTGTTGATTTGTGTAGTTGGTTGAATGTTTAAAACCAGGTTCTGCTTAATTT AATGTCTGTTTTTCCTTGACATATGTTTTTCTTGTTGGTTACTTGCATTTGATATTTGTTTCAAGCCTAGTGTTTTAGCT CTATAGCTCAGGGGCGGAATAAGAAAAAAAAAATTAATAAGGGAGCACAATTTACCGTAACTAATTGAAAGAGATAGTAT AATGTTTTTTGGGGGCAAATACAACATTTGAATTCTATTCTATTAAGGGAATTTATTGTCTTGGGGCGACTGCCCCATTT TCTATCACCTAGTTCCAGCTTTAATAATGGATTCTTTGCTTGTGAAACCGCCACAGGCTATTTCTGCTGGGTCTGAAGAA GTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCCACTCAGGTTGCGAGTCATGCTC AGAAGTATTTCATCAGGCAGCTTACAGGAGGAAAGGATAAGAGAAGATCCAGTATCCATGATATCACAGTGGTCAATCTC CCCGAAACAAAATCCCCTCCGTCTTCTCCAGATCTCTCAGTGAAGTTTTCAAATCCACAGCAGAATCAGAATCCGTCTAC CATGGTTAAACAGGAATATGACTGGAATTTACCAGACGAGGGCACGCCGATCGTTTTCCATTCAGCAAAGGGAAACATGT TCATGACACCATCGCGCGACATTTCATCACATGAATCTAAACCACAGGAGCACGATTTACTCAGAGGCACTCTCCAGGGG TGCCAGTTTATACCTTACGATACTGTTTTGCAAATGCCATGGATGCAACATCAATGAAACTACATAGGTGATGATGCAAG GTTTAGAGTTTTGAAGGTACTAAAATTTTAGACCTTTTTCAGTGATGCTGGGTTGCTTTATAGATGAATTATGTGAATAT GTTAGGAGGGCTTCAGTTAGAATTTATGAAGATACTAGTTCATCTCTTTTTGTTATGTCAAAATTATTGGACTAGTCTGT TAAATAGAAGCTGATTTGGGGCATGTGTAATATGATTTTCTGATTACATGTTTGATAATCTGATTGTAATTAGATTGCAG ATTTGTAAGCATGCATCTGATGTGCATCTTCCTCGATATAAGCTGGAGTGAGAGAATTGTCTCTCAACTTTTGCAGTTGC AAGTTCACTTGTGGAATTTAATAAAATAAAGGCATCAATTGTTTTGATGTACCAATGGTGTAATTTGCAGAAAATATGTA TTTTTTGGGGTTACTTTTGTTAGCCTACATTGGTGTGTTTTTATGTTTCATCCTCTGTATGATTAGACCAGAAAGCCTTT TTCAAATATGATTAGGAATTGGTAAATGATTTTGGTCCTCATGTACTAAAAAGAAATGTGAATTAACATGAACCATTTTG ATTGAAACATAGTGCATCTTTGGAACCGCGTTCAAAAACCATGGTAAAACCAAA
CDS sequence (LotjaGi1g1v0438200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGGGGAGTTGAAGTTCTCTCTCCAGCCTCCTATCTCCACAATTCCAATTGGTTGTTCCAGGAAAGTAAAGGAGC CAAATGGACTCCACAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTATTTCGATAAGGACACCCCGGATCGATGGTTGA GGGTGGCATCGATGATTCCAGGGAAAACTGTGGGTGATGTGATCAAACAGTACAAGGAACTTGAAGAGGATGTGTGTGTC ATTGAAGCAGGTTTGGTCCCAGTTCCTGGGTATGGTGCTGATTCTTTCACATTGGAGTGGGCTAACAATCATCAGGGCTA TGATATTGATGATGGGTTCAAGCAATTTTATAGTGTTGGTGGGAAAAGGGGTGCATCATGTACTCGGCCATCTGAACAGG AAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAACACAGGCTATTTCTGCTGGGTCTGAAGAAGTATGGTAAAGGGGAT TGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCCACTCAGGTTGCGAGTCATGCTCAGAAGTATTTCATCAG GCAGCTTACAGGAGGAAAGGATAAGAGAAGATCCAGTATCCATGATATCACAGTGGTCAATCTCCCCGAAACAAAATCCC CTCCGTCTTCTCCAGATCTCTCAGTGAAGTTTTCAAATCCACAGCAGAATCAGAATCCGTCTACCATGGTTAAACAGGAA TATGACTGGAATTTACCAGACGAGGGCACGCCGATCGTTTTCCATTCAGCAAAGGGAAACATGTTCATGACACCATCGCG CGACATTTCATCACATGAATCTAAACCACAGGAGCACGATTTACTCAGAGGCACTCTCCAGGGGTGCCAGTTTATACCTT ACGATACTGTTTTGCAAATGCCATGGATGCAACATCAATGA
Protein sequence (LotjaGi1g1v0438200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRGVEVLSPASYLHNSNWLFQESKGAKWTPQENKLFENALAYFDKDTPDRWLRVASMIPGKTVGDVIKQYKELEEDVCV IEAGLVPVPGYGADSFTLEWANNHQGYDIDDGFKQFYSVGGKRGASCTRPSEQERKKGVPWTEEEHRLFLLGLKKYGKGD WRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITVVNLPETKSPPSSPDLSVKFSNPQQNQNPSTMVKQE YDWNLPDEGTPIVFHSAKGNMFMTPSRDISSHESKPQEHDLLRGTLQGCQFIPYDTVLQMPWMQHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 296 | 293 | 5.2E-137 | ||
| PANTHER | 4 | 296 | 293 | 5.2E-137 | – | |
| Gene3D | 21 | 88 | 68 | 6.8E-20 | – | |
| ProSiteProfiles | 24 | 78 | 55 | 8.223 | ||
| SMART | 25 | 77 | 53 | 3.7E-7 | ||
| SUPERFAMILY | 28 | 82 | 55 | 4.68E-11 | ||
| CDD | 28 | 74 | 47 | 1.32547E-5 | ||
| ProSiteProfiles | 133 | 189 | 57 | 20.616 | ||
| SUPERFAMILY | 134 | 188 | 55 | 2.15E-17 | ||
| TIGRFAM | 136 | 188 | 53 | 9.5E-18 | ||
| SMART | 137 | 187 | 51 | 2.8E-13 | ||
| Gene3D | 139 | 189 | 51 | 3.1E-18 | – | |
| CDD | 140 | 185 | 46 | 2.89514E-11 | ||
| Pfam | 140 | 184 | 45 | 4.2E-12 | ||
| MobiDBLite | 208 | 234 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0438200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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