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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0440300 |
| Transcript ID | LotjaGi1g1v0440300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|A0A151T8Z8|A0A151T8Z8_CAJCA RING finger protein 141 family; Found in the gene: LotjaGi1g1v0440300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93618781..93626044) extracted from Lotus japonicus Gifu genome v1.2.
GAAACAGTGCTTCTGGTTATCCAAGTGATCAGGATGGTGCCTGCCTCCAGATGAGATTGTCTTACAGCCCAGCTGCTCAA TTCTTCCTTTTTCTGGTTCAGTGGACTGATTGCCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTTATATACAAGGT GCATACCCTACTTCTTTTCGGTGCTTATCAACACTTCTATAAACATGTTTGGATTCACGTTTATATCTTCCAAAATCACT TTTGCTAGCTACCATAAAATCTACTAGGAGTAGCTTCTCCCAGAATCGATCCACCGTTAGAATCTACTGTGTATCCAAAC ATGAACTATCTTTTCCTTTAGACAACCTATTCTAAAACATGTGATCTTCTTGATAGCATGTTTGGATCCGCTTATTTTTC AGCAAAACCAATTTTGGCACCCAGAAGCTTTTCACATACACAAGCGTCTCTCCGAAATTGATTTTAACTTTAGAATCACA GTGCAGAACTGCAACCAATGTTACTATTTTGTTCTCATGCTAGTGAATGATATACATAGAACATATTCGGTTTGTCACAG GCATATCAGGATGGGAAGACAACCATGTCCATTTACGAAAGAAAAGCCAGTCTGAAGGAGTTCTATAGTAAGTCCAATTC TACTAAGTAAATTGTCTTATTGAAATATAGCTGTCAATATCTGCTTGAGACCATGCCATGTGATAATTAAGTTTTGTTAT CTTTACCATTTTATAGGAAAGTGCTTGGAAATCCAAATGTAGTTATGGATTACTTTACACTCTCTATTAACAGGTGTGGT CTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACAGATGTTGAAGAGAGGAAACAGAAACATCTATGTGCTACTAGGT ACAAGCGTAAAGATTTAACAAGCAAAGGAAAGCTCTCTGAAATCGACATAGAGAGAGAAGAAGAGTGTGGTATTTGCATG GAGATAAACAGCAAGGTTGTATTGCCCAACTGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGTGAGAAATGTT TCGTACAGAATACTTCTGATGATCTAATGGTAATAAGGCTAAATAATTGAATGAAGCATGCCCATTGAAAATAATGATTC AATAGTTATGGTAGAGGCCAAAGAAGTTCTAGTCTACAGAGTAATAGAAATGAATATTGAAATGAAAATAAGCCACTGTT CTACAGGGTATGATGGGGAGTCTTATTCATTGCAATATACGTAACCAAATTATTATGGCATTTGAGGTTTTTGTTGAGAA GTTTCACATTGACTAGATATTTGGCCAAAATAGTCATTTTAAAGGGTAAAGCAATCCTCAATTCCTCACCTCTAAGCTAG CAAGAGGTAGAGTTCTGAAGCAAATGCCGAATCTGTAGGCTTTCTCATGTTGTCTAATTTTTCTCATTTGGTTACAATAT CACATTGGAAGATAATTACATTAATCCTCCTGAAACACTTCCAAGTGACCTCAATATCCACTGATTGTTTCATAAGACAA CTGTCATTTATTTGTTTATCTTTTTGGAGATGGTCAAGTTGAGTAAAGTTACATATATTTTTAGTTAGTACAGAACAAAA TAGTCGTTTTTATCAGCCAGCAAATTTTTACTACATTTCATTATGGCTGGACTCAAGTTTGGAAATCTTTCTGTTGGAAA ATATATCAGTATTTATTGTTTTCCAGTCAATTCTAGAGATTCTATTATTGACTTTTTTATATGTAATAATTTTCTCCTTA ATTCAAGGAGTAGTAATTCTCTCCTTAATTCAAGGAGTAATAATTGTATCCTCTCTATAAATACCAGCCTTTGGCTGAGG AATAAAACAGAACAACATTTACCTATTATTTTCCAATATGGTATCAAGAGCCCTAGGTTGGGACTTCTACTGTAGAGCTT TCCACAGCTAGTCTGATCAACCTATTTCCTTCCCCGACCCGTTTCACATACCCATTTAGCCTCCTATGGCAGGTCGCAAT AGGTGGCCCTCCATAGCAGAGGCCTACACCGGATCCACAACCAACCACGGCGAACAATCACTTGACTCGGGCGTCAACAG CGGTGATGGCGGTGGCAAAGGAGACGGCGGTGGCCGCGGTAATGGTGGTGGTCGTGGAGATGGCACACCAAAGTTCGTCG CAAACAGTGGCGGTAATGGCGGCAACAATGAAAACAGGAACAACAGTGTTTATGGTGACAGTAATGTCAATATAGGTTGC AATGACCAAGAGGGTTCCTCATACTCCCTCAAGGTCAATATTCCTAAGATGAATGGGAAGAACTATAATGAATGGGCCCA AACCGTTCGCTTGGTATTGGATAGCAAAGGGAAGCTTGGTTTTTTAACAGGAGCAGTAGCTGAACCAACAAGCGGAGACC CTCGTTACAAACAATGGAAATCTGAAAACTCCTTGATTATTGCTTGGTTGGTAAGCTCTATGGAAACTGGAATAGGTAAG CCTTACATGTTTTTGCCTTCTGCAAAGGATGTGTGGGAAGCTGTTAAGGAAACATACTCTGATATTCAAAACTCTTCCCA AATTTTTGGTTTAAAATCAAAGTTATGGCAGGCTAAACAAGGTGACAGGAGTGTAACTGCTTATTACAATGAGTTGTTGA CCCTGTGGCAAGAATTAGATCTCTGTTATGATGACAATTGGAGGTGTACAGAAGATAGTGTTCTGTTTCTCAAGAGGCAA GAAAATGATCGTGTCTTCATGTTTCTTGCTGGGCTAAATACAGACCTTGATGAGGTAAGGGGTCGAGTTTTAGGAAAAAT ACCATTGCCAACTCTTCGTGAAACTTTTGCAGAAATCAGAAGGGAGGAGGCACGACAAGGAATTATGATGGGCAAGACAC CACGAAGTTCTGAATCTGAAGGCTCTGCTCTGGCTACTAGGAACCTCGGCGAGGGAAAAAGGTCAGACAAAGTTCCTTGG TGCGATCACTGCAAGCGCGAATGGCACACGCGTGAAAATTGTTGGAAGCTCATAGGAAAACCTCCTAACTGGAAGAAGAA AGGTGGTCGTGCATTTCAAGCAAGTAATTCTGATCAAGGGCAGCAATCCTCTACGACTCAGCTTCCGCTCACTACGGAAC AACTAGACAAACTGCTCAAACTCCTCGAGTCTTCAACCCCTTCTTGCTCTATAGCAACAAAAGGTAATTCTGCATGTCTT AGTGTCAGTTCCAGTCATACTTGGATATTAGATTCAGGTGCCTCGGATCACATGACAGGTGAATCCACCTTGTTTTCTTC ATATAGTCCATGTGCAGGTAATCAAAAAATAAAAATTGCAGATGGCTCTTTTTCAGCCATTGCAGGTAAAGGGTCAGTTG TGTTGTCTCCAGTGTTAACTCTTAACGATGTCCTTCATGTTCCAAACTTATCCTGTAATTTAATGTCTGTTAGTAAATTA ACCCGAGATATAAATTGTCAAACCAATTTTTTCCGTTCTCACTGTGTCTTTCAGGATTTGAACTCGGGGAAGATGATTGG CAGTGCTAAGGAGAGTGGAGGACTCTACTACCTTGACATTGGATCTGCATCACAACTACCTCCAAAAACAATAAGTTCCT GCTTTGAATCTTTTTTTGTTTTGAATAATAATGATGACAACGTTATGTTATGGCATTTACGATTAGGTCATCCTAGTTTT CATTACTTAAAACACTTGTTTCCTAAGTTATTTTATAATAAGAACCTTTCTTTGCTTAAATGTGAAGCATGTGAGTTTGC AAAGCATCATCGTTCCCAATTTCCAATACAGCCTTATAAACCATCAAAACCTTTTTCTATTGTTCACAGTGATGTTTGGG GCCCTAACCGTACAAGTACACTTTCTCTTAAAAAATGGTTCATCACATTTATAGATGACCATTCAAGAGTATGTTGGGTG TACTTGTTAAAGGGGAAATCAGATGTTTGTCAGGCTGTAAAGGATTTTTGTACAATGGTGCAGAACCAATATCAAACAAA TATTCAAGTCTTTAGAAGTGATAATGGCAAAGAATATTTTAACACTAGTTTGGATGATTTTTTCCTAAAAAATGGGATTG TACATCAAAGTTCATGTCCTAATACCCCTCAACAAAATGGAGTTGCTGAAAGAAAAAATAGACATTTATTGGAGGTTGCT AGAGCATTACTTTTCTCAAGTAAAGTACCAAACTATTTGTGGGGCGAAGCTGTTTTAACAGCGGCATATTTAATTAATAG AATGCCCTCCAAAGTTCTCAATTTCCAAACTCCAATTAATACTTTCAAAGAATGTTTTCCTAGTACTCGTGTTTCAACTG ATTTGACATTAAAAATCTTTGGTTGCATAGCCTTTGTTCATGAACATAAAAATGTTGGAAAACTTGAACCACGTGCTATA AAATGTGTTTTTGTTGGATACTCCCCAACCCAAAAGGGGTATAAATGTTTTGATCCAAAAAACAAGAAAATGTTTGTCAC TATGGACGTTACGTTTTTTGAAAATAAACCTTTTTTTAATGACACTCATCTTCAAGGGGGGGATATAAAGGAAGACTCGT TTCAAATTGAGGACATGAGTTTTTTAAATAAATTATCTTTGCCTGTACCACAAAGCTCTAAGACTTATAGTTCTGCACCA ACAGAAAATGGCCAAGATACTCTATCTGATCCTACTCCTGTTATGAGTAAGGAACTTGGGGAATCAGAGCCTACATTTTC TCATGAAGAAACCAATGAGAATCTTGACAATAGGGATGATGATGATCTAATTAAAATGCCACAAAATAATGAGTCACTTA AAGAGAACAGATTTGAAGTAGGAAACAGGACTTGGAAAGGGAAGGTTTATGTGAAAAAGCACCACAAAGAAAGGAATGAG TCCACATCTCAACACTGTCAGGAATCTGAACCGGGGAATGATCAACCTCCTAAGAAAATGAAAGGTAAGTCTATCTCTGT TTCTGAGAGTCGTATTTTGTATCCTGATATAGATGATCCTGTTGCCATTAGAAAACCTGTTAGATCTTGCACTAAACACC CTATTTCCAATTTTATATCATATTCAAATTTGTCTTCATCTCTGTCTGCCTTCACCTCAAAATTGTCTAGTGTAGAAATT CCAAAAAATGTCCAGGTTGCTCTAGAAATTCCAAAGTGGAGGGAAGCTGTACTTGAGGAGATGAAAGCTCTTGAAAAGAA CAAAACTTGGAGTGTTATGACACTACCAGATGGCAAGAAGACAGTTGGATGCAAATGGGTGTTTACTGTGAAGTATAATT CAGATGGGTCAATTGAAAGGTACAAGGCTCGCTTGGTGGCGAAGGGCTTTACTCAGACCTATGGTATAGACTACTCAGAG ACATTTGCTCCTGTTGCAAAATTGAACACTGTCCGAATTCTCTTATCTCTTGCTGCCAACCTGGATTGGCCCCTACATCA ATTGGATGTTAAGAATGCGTTTCTTAATGGTGATCTAGAAGAAGAAGTATATATGGAGATTCCTCCTGGCTTTGAAAGCA AATTTGGACCAAATGTATGCAAACTAAATAGGTCTTTGTATGGATTAAAGCAGTCCCCTAGAGCTTGGTTTGAAAAATTC ACTCAGTCCATGAAGAAACAAGGGTACATTCAAGGACAGGCTGACCACACCTTATTCACAAAATTCTCCCACGATGGGAA AGTTGCTGCCCTGATTGTTTATGTTGATGATATTGTCCTTACTGGAGATGATACAGTTGAAATGGCAAGAGTAAAAGAGA AATTAGCAGTAGACTTTGAAATCAAGGACTTAGGACCCATGAGATATTTTCTTGGAATGGAGGTTGCTCGATCAAAGAAT GGTATTGTGGTTTCACAGCAGAAATACATTCTAGACTTATTGAAAGAAACAGGAATGAGTGGATGTCGTCCAGCAGATAC CCCTATGGATCCTAATGCTAAACTTTGGGAAGAAGGAAGTGTTCCCGTTGATACTGGAAGATACCAAAGATTGGTTGGGA AACTGATTTATTTGTCACACACTCGACCTGATATTGCTTTCTCAGTTAGTGTAGTGAGTCAGTTCATGCATTCTCCTCTT GAGGAACATCTTGAGGCAGTCTATAGGATACTGAGATATTTGAAGGGAAATCCCGGAAAAGGCTTATTTTTTAAGAAGAC TAGTGAAAGAAATGTGTCTATCTTCACCGATGCTGATTGGGCAGGCTCAGTCACAGATAGAAGATCAACCTCTGGATATT GTACCTATGTTTGGGGTAATCTTGTGACATGGAGGAGCAAGAAACAAGGAGTTGTGGCAAGAAGTAGTGCAGAAGCTGAG TTTAGAGCTATGGCTCAAGGTATTTGTGAAGGATTATGGATTCATAGAGTCCTAGAAGAACTTAAGATGAAAATTGAGCT TCCATTGAAATTATACTCCGACAGTAAAGCTGCTATTAGCATAGCTCATAACCCAGTTCAACATGACAGAACCAAGCATA TTGAGATTGATCGACATTTCATAAAGGAGAAGTTAGATGCTGGAATCATATGTCTACCTTTTGTGACTTCGAGTCAGCAA ACTGCGGATATCCTGACCAAGAGCTTGGCAAGACCTACCTTTGAGCATTTGATAGGCAAGTTGGGCATGATAGATATCTA TGCACCAACTTGAGGGGGGGTGTTGGAAAATATATCAGTATTTATTGTTTTCCAGTCAATTCTAGAGATTCTATTATTGA CTTTTTTATATGTAATAATTTTCTCCTTAATTCAAGGAGTAGTAATTCTCTCCTTAATTCAAGGAGTAATAATTGTATCC TCTCTATAAATACCAGCCTTTGGCTGAGGAATAAAACAGAACAGCATTTACCTATTATTTTCCAATACTTTCTATATATG ATTCTAAAGCCAAAATCAATTCTGAGAAGTTTGTGTAAGTAGCTTCTGTGTATCATATTTGATTCTGAGAAAAGAGAAGC GAGTTATATTACTGCTATAGCATTTAGATATCCAATAAAAGTTAGCTTCTTCACTTTTAAGGATTCTTATTTATTTTGTT GGTTTAGGCATGCAAGATCTCAATCTTGCCCTTTCTGCCGGGACAGTCTTAAAAGAGTAAACTCTGGTGACCTTTGGATA TACATGAGGAGCAGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGGCTATTTATGTACACAGAAAA ATTGCCTCTCGTAGCAAGACCTTATATTCATGTCAGATCGTCACAATTGGTGATTGCCACCTAG
CDS sequence (LotjaGi1g1v0440300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTGTCTTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTCAGTGGACTGATTGCCACCTTGCCGGAGCCTT GGGATTGCTTAGAATTCTTATATACAAGGCATATCAGGATGGGAAGACAACCATGTCCATTTACGAAAGAAAAGCCAGTC TGAAGGAGTTCTATAGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACAGATGTTGAAGAGAGGAAACAG AAACATCTATGTGCTACTAGGTACAAGCGTAAAGATTTAACAAGCAAAGGAAAGCTCTCTGAAATCGACATAGAGAGAGA AGAAGAGTGTGGTATTTGCATGGAGATAAACAGCAAGGTTGTATTGCCCAACTGCAATCACTCAATGTGTATGAAATGCT ACCGAGACTGGCATGCAAGATCTCAATCTTGCCCTTTCTGCCGGGACAGTCTTAAAAGAGTAAACTCTGGTGACCTTTGG ATATACATGAGGAGCAGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGGCTATTTATGTACACAGA AAAATTGCCTCTCGTAGCAAGACCTTATATTCATGTCAGATCGTCACAATTGGTGATTGCCACCTAG
Protein sequence (LotjaGi1g1v0440300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYQDGKTTMSIYERKASLKEFYSVVFPSLLQLHRGITDVEERKQ KHLCATRYKRKDLTSKGKLSEIDIEREEECGICMEINSKVVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLW IYMRSSEIDDLASINKENLKRLFMYTEKLPLVARPYIHVRSSQLVIAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 195 | 195 | 5.1E-112 | – | |
| PANTHER | 1 | 195 | 195 | 5.1E-112 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 208 | 182 | - | – | |
| Gene3D | 93 | 157 | 65 | 1.3E-14 | ||
| SUPERFAMILY | 99 | 153 | 55 | 7.07E-14 | – | |
| Pfam | 107 | 153 | 47 | 1.0E-9 | – | |
| ProSiteProfiles | 110 | 148 | 39 | 12.061 | ||
| SMART | 110 | 147 | 38 | 8.3E-6 | ||
| ProSitePatterns | 125 | 134 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0440300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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