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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0444500 |
| Transcript ID | LotjaGi1g1v0444500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|K7MTM6|K7MTM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94203973..94206793) extracted from Lotus japonicus Gifu genome v1.2.
CCATTCCATGATGTCCATGCATATTAAAAATATACACCAACATGCTTACGATATGAGAACCAAATTATTCGTTTACCCAT CTCAAAGAGGCACAGTGCTGAAAGGAGAGAGAAAGCCAGAGAGAAGAAAGAGAAAGCTAGACGATTAGCTTTTCAAAATT ATTTGTGAAGATCAATCTACGGTTTGAACTTCTCATCTCTCTCTGTAGAAATATTTGCTGAAATCGAGGATTTTCATGGA AGAAGATGAACAGTAGAAGAGAAAGTAAATGAAACAAGGAGTTTCCTAAACTATTCCATTTTATGAATTAGTGGTTTGAT TCCACCAATGATTTACATATAGCTAGGGAAATAGAGTACACAGTTTTTTTTGTCTTTCTTCAAATTCTGGTCTTCAAAGG CAAGTGTAGAAGCTCCAAATTAAAGTGGAAGAAGGTAGATATGGATTTGAGGGTGGAAGAAAGAGATGATTCTGAATGTT CCAAGACAAGCCCTTCTAAGGAAGATGGTTGTGAAATGAGTGAAGAAGATGAAAGTAAGCAAAACACCAACAACAATGGA GGGAGCTCAAGCAACAGCACTGTGGAAGAGAATGACAAGAAGGGATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCGAG GCTACGTTGGACCCCTGATCTTCATCTTCGCTTTCTCCATGCCGTTCAAAGACTTGGAGGACAAGAGAGTGAGTTTCACA CGCTGATTTCAATTTAAGTGTAGTATTCAAATGAGTTTCCAAACATGCACATATTTTGTTTGTGCTTTTCTAAATTTCAA TTTTATATGGGGAACATTAATGATATATCCTTCCTTGAAATTTTTGCTATATTTATTTATTGATTAAATTGTTTTCTTGG GTGTAGGAGCAACACCAAAGTTGGTTCTTCAGTTGATGAATATCAAGGGTTTAAGCATTGCTCATGTCAAGAGTCATTTA CAGGTAAATCATATGGACAGTTGCAAACTAAATTTGTATTTTCTTTTCTTTTGTTTTAGCAAGTAAGTTTGTCTAATTTC TTTATCAGTTTGGTTAAGTTCTTTTTCCCCATTTTTTTTTCCTTTTCAGATGTACAGGAGCAAGAAGATTTCTGATACTA GTCAAGGTACAACAAGGTTTTCTTTGTTTCATAAGCTTACCATCAATGAAATTATGATATCAATATATGAAGAGTTTGTT AGAAAAAAAAAAAAAAAGCTTACCATCAATATTTAGGGATTAGGGTTTGTGCTCATGGGTTCTTGATGAACAATGAACAT TTGTGTTTATATGTATGACAGTAATGGCTGATCATAGGCTTTTTTGTAGAAAGTGGAGACAGAAATGTTTATAATCTTAG CCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATATAGGTATACATCAATTTGATCTTTGGATATCT GTTGTTCGCACAAGTGCAAGCAAATGTTACACTTCCTTCGAGAAAAAAGATAAACGGATGTCTGTAATGGGTTGTTATGA AAGTCATTCATATACTTGAACATTTTCAGTTTCACAATTGAATTTATTCTTTCTTATTTATACAGGTGTGGATATGGGGA TGCTTCTTTTGCCATGTATGAGAACATGCTACATAGGCCTTTCATGGGTCGAGGTTCAGCAGATAAATCCATGGCTGAAT TTCATGGAAGAATGATTGAGAGTATCCATGGGATAAATAGTAACATCAATTGGACTAATAGTACTCTTTTTCAAGTGCAT CCTTCCAACTTCAGTGAACCATCAACAACTAAAGTTCATGAACTACAAGATAAATTTCTCTCATTTGGTAGCTATGGATC ACAAGTAAGCTTGAGTCAGATTGATCTCCATCCATCACCCCAAGTGAAGCCAAGTGCACAAGAGCTCATGCCTATTACTA AGCCTGCAAATTCAGTGGAAAAGACCCTGAAAAGGAAGGTTTCGGATATTGATCTTGACTTAGATCTGTCACTTAAATTA AGTTCAAGGAACCAAGAAAGCATAGAGGACCATAAAGTTGATAGCAACCTATCACTCTCTTTGTTTTCTCAATCCTCTAC CTCCTCTTATCTTAGCAGAAGGCTGAAAGAAACACCAGATTTTTCTACGGAGCAAAGGAAAAAACGCGCCAGTAATGCTC TGGATCTGAGTATTTGATGAATGAGACATATTCTAAGTGAGATCCTGAGGTACCTGTCAACGATGTACCAAAGTCGATTC CTTTGTCCCCATTTGTTGTTTCCTTCTTTGTCCTATCAATAAAATTATGTCAAATAGACATTAGCACGACTCTTATAAAC TTAAAAGAGCGGTCTATTGACGTAGGACAGAGAATGAGACATCAAATAGAGAACACTGGTTACTAGTGTGTCAATCATGC ATATATTGTAACCAAATTATTACACTTATCTGACACAATAATATTTTATCCTTGTCTCTTTCTACATATATGGACAGTGA ATGACAATTGGTGTATCAAAGACTGGCACTAGCTAGGTGCTAAGAATCATGATCTCAATATTATTAGTTTTCTTCAGCCA TGAAAAAGCTACCAGAGAAAGTTCAGTGACTAAAAAACTAAATAGCAAAAACAAAGTTGCTTTTGTGCACCTCCTATAGA TCATTGGGTTTGAGTTCATATAATTCTTTTTTCATGAAACAAAACTGTTTCTGTGTGACTGTCACACTGTGCAAGTTATT TATCAATTAAATAAGAGCATTTTAGTGTTGACTTAATTGCTTAGTTTCAAGGTTTTTTGGTCCATTGAGTTGAAAGGGAT TGGTGCATCTACAGTTCTACA
CDS sequence (LotjaGi1g1v0444500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGAGGGTGGAAGAAAGAGATGATTCTGAATGTTCCAAGACAAGCCCTTCTAAGGAAGATGGTTGTGAAATGAG TGAAGAAGATGAAAGTAAGCAAAACACCAACAACAATGGAGGGAGCTCAAGCAACAGCACTGTGGAAGAGAATGACAAGA AGGGATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCGAGGCTACGTTGGACCCCTGATCTTCATCTTCGCTTTCTCCAT GCCGTTCAAAGACTTGGAGGACAAGAGAGAGCAACACCAAAGTTGGTTCTTCAGTTGATGAATATCAAGGGTTTAAGCAT TGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGATTTCTGATACTAGTCAAGAAAGTGGAGACAGAAATG TTTATAATCTTAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATATAGGTGTGGATATGGGGAT GCTTCTTTTGCCATGTATGAGAACATGCTACATAGGCCTTTCATGGGTCGAGGTTCAGCAGATAAATCCATGGCTGAATT TCATGGAAGAATGATTGAGAGTATCCATGGGATAAATAGTAACATCAATTGGACTAATAGTACTCTTTTTCAAGTGCATC CTTCCAACTTCAGTGAACCATCAACAACTAAAGTTCATGAACTACAAGATAAATTTCTCTCATTTGGTAGCTATGGATCA CAAGTAAGCTTGAGTCAGATTGATCTCCATCCATCACCCCAAGTGAAGCCAAGTGCACAAGAGCTCATGCCTATTACTAA GCCTGCAAATTCAGTGGAAAAGACCCTGAAAAGGAAGGTTTCGGATATTGATCTTGACTTAGATCTGTCACTTAAATTAA GTTCAAGGAACCAAGAAAGCATAGAGGACCATAAAGTTGATAGCAACCTATCACTCTCTTTGTTTTCTCAATCCTCTACC TCCTCTTATCTTAGCAGAAGGCTGAAAGAAACACCAGATTTTTCTACGGAGCAAAGGAAAAAACGCGCCAGTAATGCTCT GGATCTGAGTATTTGA
Protein sequence (LotjaGi1g1v0444500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLRVEERDDSECSKTSPSKEDGCEMSEEDESKQNTNNNGGSSSNSTVEENDKKGSVRPYVRSKLPRLRWTPDLHLRFLH AVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKISDTSQESGDRNVYNLSQLPMLQGYNPSQSSSYRCGYGD ASFAMYENMLHRPFMGRGSADKSMAEFHGRMIESIHGINSNINWTNSTLFQVHPSNFSEPSTTKVHELQDKFLSFGSYGS QVSLSQIDLHPSPQVKPSAQELMPITKPANSVEKTLKRKVSDIDLDLDLSLKLSSRNQESIEDHKVDSNLSLSLFSQSST SSYLSRRLKETPDFSTEQRKKRASNALDLSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 60 | 60 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 6 | 351 | 346 | 1.3E-80 | – | |
| PANTHER | 6 | 351 | 346 | 1.3E-80 | – | |
| MobiDBLite | 33 | 50 | 18 | - | – | |
| ProSiteProfiles | 62 | 122 | 61 | 13.088 | ||
| Gene3D | 62 | 123 | 62 | 1.6E-24 | – | |
| SUPERFAMILY | 65 | 120 | 56 | 1.09E-14 | ||
| TIGRFAM | 66 | 121 | 56 | 3.9E-23 | ||
| Pfam | 68 | 118 | 51 | 5.8E-8 | ||
| MobiDBLite | 328 | 351 | 24 | - | – | |
| MobiDBLite | 330 | 344 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0444500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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